TCONS_00015780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015780
Unique NameTCONS_00015780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length701

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015780 ID=TCONS_00015780|Name=TCONS_00015780|organism=Clytia hemisphaerica|type=transcript|length=701bp
TGTTTGTCAGAGTCCATTTTCAAACTTGAGGCACAAATCCGTCGGTCGTC
GAGGTCAATTTCTTAGGGCGTAATGGAACAATATAAACCTGAGCTAGAAT
CAACTGGAACTTTTAGGACATAAATTTCTAAGTTTTTCAAAGGACGatat
aattacattttattgtatGATATTATTTTTAAACAGCAGTGTGTCCGGGA
AAAAGCGGAGTAGATTTATATAAGATTTATTAGATCGTTCCCATATGCAA
GACTAAGATTTTTTGCTCAGTCAATAAATATTTAATTCCACGGTATACAA
ACGTCTTTTTGAAAACTGACATCAAGTTATTCGGTCTTGAAAATTGTCAT
AAATTGTGAAGGATTTTTTATTCAGGGTGTCCGTAAAAAAGTATCGAGAC
AAAACACAACTAGAGAGTACGAAATGGTATGAATTGTCCcaattttttct
ctgattttttaaAGACCTGCGATTAATATattaaaaatgacttttttaca
ataacCGTGTACAATGAAGTACTTTCTCATACTTTGACGAAAACAGACAC
ACAAACCTTCTTACTCAAtgacatgttcaaactcgatactttattACGGA
CACCCAAGCTTTATCAATTCCATCCGCTTTTTCCGGACACGCTGTACCTA
CATTATTTATCAtcctttatttttttaaacagaCAAATGACTTGTCACGG
T
Run BLAST on NCBI

transcript from alignment at sc0000216:94438..95138

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015780 ID=TCONS_00015780|Name=TCONS_00015780|organism=Clytia hemisphaerica|type=transcript|length=701bp|location=Sequence derived from alignment at sc0000216:94438..95138 (Clytia hemisphaerica)
ACCGTGACAAGTCATTTGtctgtttaaaaaaataaaggaTGATAAATAAT
GTAGGTACAGCGTGTCCGGAAAAAGCGGATGGAATTGATAAAGCTTGGGT
GTCCGTaataaagtatcgagtttgaacatgtcaTTGAGTAAGAAGGTTTG
TGTGTCTGTTTTCGTCAAAGTATGAGAAAGTACTTCATTGTACACGgtta
ttgtaaaaaagtcatttttaatATATTAATCGCAGGTCTttaaaaaatca
gagaaaaaattgGGACAATTCATACCATTTCGTACTCTCTAGTTGTGTTT
TGTCTCGATACTTTTTTACGGACACCCTGAATAAAAAATCCTTCACAATT
TATGACAATTTTCAAGACCGAATAACTTGATGTCAGTTTTCAAAAAGACG
TTTGTATACCGTGGAATTAAATATTTATTGACTGAGCAAAAAATCTTAGT
CTTGCATATGGGAACGATCTAATAAATCTTATATAAATCTACTCCGCTTT
TTCCCGGACACACTGCTGTTTAAAAATAATATCatacaataaaatgtaat
tatatCGTCCTTTGAAAAACTTAGAAATTTATGTCCTAAAAGTTCCAGTT
GATTCTAGCTCAGGTTTATATTGTTCCATTACGCCCTAAGAAATTGACCT
CGACGACCGACGGATTTGTGCCTCAAGTTTGAAAATGGACTCTGACAAAC
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008816XLOC_008816Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015780-exon-sc0000216-1491911889:94438..95138TCONS_00015780-exon-sc0000216-1491911889:94438..95138Clytia hemisphaericaexon
TCONS_00015780-exon-sc0000216-1510915933:94438..95138TCONS_00015780-exon-sc0000216-1510915933:94438..95138Clytia hemisphaericaexon
TCONS_00015780-exon-sc0000216-1575043694:94438..95138TCONS_00015780-exon-sc0000216-1575043694:94438..95138Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:94438..95138 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.144218	0.140636	0.163292	0.0798776	1.36141	0.845273	1.01979	0.781127	0.182295	0.376337	0.0730563	0.144073	0.0479576	0.0996089	0.122838	0.0878827	0.108264	0.110967	0.153307	0.32085	0.209158	0.10202	0.744111	0.300669	0	0.483672	0.296628	0.211046	0.320143	0.407718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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