TCONS_00015769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015769
Unique NameTCONS_00015769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length138

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015769 ID=TCONS_00015769|Name=TCONS_00015769|organism=Clytia hemisphaerica|type=transcript|length=138bp
GAATGAAGATTTCCGCAATCGTATAGAACTTTGTCATTCGAAAAAATGGA
ACTCATCTCCTCTCTATGATTGGTTATCCTTGCACATGATTGGTCAATGC
TAAGTTATCCTTGCACATGATTGGTCAATGCTAAGTTA
Run BLAST on NCBI

transcript from alignment at sc0000216:199066..202867-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015769 ID=TCONS_00015769|Name=TCONS_00015769|organism=Clytia hemisphaerica|type=transcript|length=3802bp|location=Sequence derived from alignment at sc0000216:199066..202867- (Clytia hemisphaerica)
GAATGAAGATTTCCGCAATCGTATAGAACTTTGTCATTCGAAGTAAGTTT
TATTCATTGATTTTATCTGAGGAATATCGTCAGTTCATCAACTACCTGTC
CTTTCACTTCAATCCAAAACGCCAGTTGTTAACACCAACCCCTTTAACAA
CGGACCTTTATTTTGACCTTGCCATTAATACTGAAAATCAAGTGAAAACG
ATCAAATATTTAAAACAACTTCTTTACTTAACTACCGTAACTACTATATA
TTTTTGCGGGTACTAAATTTTCGAGTGTAGTTAAGGTATGTGTTCACCTT
TCTTGACACATTCTCTTTAATTGATCATATCTTTAGAACAACAAATTTTT
ATATATCAAAAGAAGCCAGTACATTGTTCTTCGAAAACATTCAAAACGAA
CTTTAGTTTTTAAAAATTTTATTTTCAACTGATGATCGTCTCAACGGCGT
GAAACTATTAGTTTTGAAATAAAACTCATTAACTTCATTCGACAATATAG
TATATATCTAAAGTATATATTTTCTGAAAGCCAATAATATTCTCTTTCTA
ATGGTAAAAGTTTCAGCTGAATTTAAAAAACTGGGCAGGACATAATTAAA
ATGTTAAGAATTTTAACCTTACCTACTTTAAAGAAGTTAAAGTCACCCAT
AGCTTTTGAATTTTGAAAAAATAATTTCGATACTATGTTTCCAATAGATC
GAACTAAAAAAGTGTCTTGGGATTTTTTTTGGAATTGACTTTAACTCTTT
AAATCCTAAATTCTGTAAAAATATCGATAAAAAAGTAACTTTAAATGTGA
TTTTTTCAGTTATCTGTAAATTGAGGAAAAACAACTCGGTTAGAAATAAA
ATCCTAAGACACTTTTTAAGTTTGATCTTTTGGGAATCNNNNNNNNNNNN
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TTACCAAAATGAAATCCAGTAACTTTTCTTCCACTTTGACTGAAAAAAAA
ATTTTTGACAAAAAATCGGAAAAAAGGTGTACACATACCTTAATTTTGCG
AATTTTAGGCAAAACTTCGCGAAATCTAATACTATTTAAATTTTTCAAAA
ACAGGGCATCACGAATTTGAATACACCGGAAGATTTTATAAATAAGCCAA
AATTGCAGAACTTTTGAAAATAGAAAAACAAATTTTTTTTTAAGGAATTA
GTGATATTTTGTTACAATCTCGATATTATTTTATATGTTATGTTTCAAGT
AAAACCAGTCTTTTTTTGTTTCAAACCTTTTCTTAAAAAAAATCAAATTT
AGTGAATCGCGAAATTAAATACAGGGAAAAATTCCAGAAAGTTGCAATCG
CGAAATTTAGTTCTCACAAAGAACGCTTCTCGGAAAAAATTTCGCAATTC
GCGTTAATTTAGTACCTGTACAGACACACTTAAGGTATTATGGATCAAAG
TTAAGAGGCTGTATACTTTTCCTGAAAAAATTCGTTGCCATTAGAAAAAA
CACGTTTCTTTATAAGAACATCCAAAACTTTATGAAGACTTCCTATGTTA
TTAACTTTTTGGTAATTTAAACCTAAAATGTTTTCAAAACATCTCAGAAT
TTTTTTAACTTTGTCTCGATATATTGGCGACTAAAGCCTTGTGTTCTTGT
ATTTTATAAAAAATATGTGTAGTTCTGCAATTCGGACTAGGTCGAAACTG
CTGGAAATGAACTATCATCTCTTTTATTGCTCTCTTCTGTTTAGAAAATG
GAACTCATCTCCTCTCTATGATTGGTTATCCTTGCACATGATTGGTCAAT
GCTAAGTTATCCTTGCACATAATTGGTCAATGCTAAGTTATCCTTGCACA
TAATTGGTCAAAGCCAAGCCATCCTTGCACATGATTGGTCAATGCTAAGT
TA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008807XLOC_008807Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015769-exon-sc0000216-1575043694:202826..202867TCONS_00015769-exon-sc0000216-1575043694:202826..202867Clytia hemisphaericaexon
TCONS_00015769-exon-sc0000216-1575043694:199150..199223TCONS_00015769-exon-sc0000216-1575043694:199150..199223Clytia hemisphaericaexon
TCONS_00015769-exon-sc0000216-1575043694:199066..199087TCONS_00015769-exon-sc0000216-1575043694:199066..199087Clytia hemisphaericaexon
TCONS_00015769-exon-sc0000216-1510915933:202826..202867TCONS_00015769-exon-sc0000216-1510915933:202826..202867Clytia hemisphaericaexon
TCONS_00015769-exon-sc0000216-1510915933:199150..199223TCONS_00015769-exon-sc0000216-1510915933:199150..199223Clytia hemisphaericaexon
TCONS_00015769-exon-sc0000216-1510915933:199066..199087TCONS_00015769-exon-sc0000216-1510915933:199066..199087Clytia hemisphaericaexon
TCONS_00015769-exon-sc0000216-1491911889:202826..202867TCONS_00015769-exon-sc0000216-1491911889:202826..202867Clytia hemisphaericaexon
TCONS_00015769-exon-sc0000216-1491911889:199150..199223TCONS_00015769-exon-sc0000216-1491911889:199150..199223Clytia hemisphaericaexon
TCONS_00015769-exon-sc0000216-1491911889:199066..199087TCONS_00015769-exon-sc0000216-1491911889:199066..199087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:199066..202867 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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