|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015761 ID=TCONS_00015761|Name=TCONS_00015761|organism=Clytia hemisphaerica|type=transcript|length=1114bp
AAATAATCCTGAACAGTCACTAGAATGGCTGGTGTGGAAGTTGGACAAGA
GTTGGAATGTTGCGTTTGTCTGGATCAATTTGTAAAACCAAAGCTTTTGA
ATTGTATGCACACTTTATGTGAGGGATGCATCGACAAACTGATTCAGACT
GGAACTATTAAATGCCCTGAATGTCGAGAATAAACCAAGGTCCCAAATGG
TGCATCTGAGCTATCTACCAATTATATTGCACAAAATATCATCGACAAAG
TGAAAAATGCTGCAAGAAAGGCCCTTTCTGTCAAGATTGTGTCGCCGAGT
CTCCTGCTTCAAACCATTGCGAAACTTGTGTTTTGAATTTATGTCAAAGA
TGCACAAAGTACCATCAAGAATGTGTCAGGTTTGTAAGTCATAAAATTAT
TGACATACAAAATGTCACAAAGAAAATCTCTAGTCCGAAACGTTACTGTC
CAAAACATAATGAgctgttgaaatatttttgccAGCAATGCAAGGTGGTT
GTTTGTACTGATTGTATGGTCAGTGTAGAGCACAAACAACATAACATCTC
CTTGGTGTCAGAAACTACTGCCAAAGCTAAAGAGGAATTGAAGCAAAAAC
TTGAAAAGATGAAAGACAAGAAGCAAACAATGGGTAATTGTCTCCAACAA
GCAAAGTCTTTTTATAAAGATGTTATAGATGAAGATATAGCGAGCGTTGA
ATTAATCAAGAAAACTTTCAACGAAGCGCGAAGTATTCTCGCTGAAAAGG
AAGAGCAGCTCATTGCTCAAGTTCAAGCCCAAAGCATgtcaaaaggtgaa
aataagcTTAATCTTGATAAATTCTCAAAGGCTGTTCATGCAGTCACTCA
GACAGCAAATTATGTGGAATCTGTCGTAAAGGAAAATTGTGATGATCTGG
AGATGATTAGTGAAATGTCCAAATAGATGGATAAAGTCTTCCAAGAATAT
TATCTTGATGAACCCATTACACTCATTTTCCAGTGGGCCTTCACTATTCt
tcagaaaattcttttttctgcAGAGCTCCCAATGTAATCAGATTTTCTGT
GAATCATCGAATACCATGAATGTTACGCAAACAATATATGAAAAGTTCTA
GGCAAAAGCCCACT Run BLAST on NCBI transcript from alignment at sc0000216:80218..86952- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015761 ID=TCONS_00015761|Name=TCONS_00015761|organism=Clytia hemisphaerica|type=transcript|length=6735bp|location=Sequence derived from alignment at sc0000216:80218..86952- (Clytia hemisphaerica)
AAATAATCCTGAACAGTCACTAGAATGGCTGGTGTGGAAGTTGGACAAGA
GTTGGAATGTTGCGTTTGTCTGGATCAATTTGTAAAACCAAAGCTTTTGA
ATTGTATGCACACTTTATGTGAGGGATGCATCGACAAACTGATTCAGACT
GGAACTATTAAATGCCCTGAATGTCGAGAATAAACCAAGGTTTGTTTCAA
TATTTTACTGATCTTACTAAATATTACTTTTACCACTTCTATAAGATCAA
TCATAAAACATCACTGGTGTCTGTGATCGATACAGTACGGTCAGAACAAT
ACACCTATCAACCTTAAACAGCAAGGTCATGAGGAGACTGGTAACAAATT
TACAGAAAACTCTTTTCAACACGTTGCATTTCCAATCTTCAAACGAAATC
AACACAGAAGCTTATTCTACCCAAGACTATATTCCAGTTGAGGGAATCTT
TGCGGTGGAGCGCAAACAATATCTAGCTGTTCCTGCGTTTGAATTGAGCC
ATTCGCCTATAGATTGACATAAAAATGATGATATAATTATAAAAGGTGTG
CACATAGAAGGTGTCGTCAGTGTTTTTTTAGCTCTATGTTTAAGCGATTT
AGATCACAACCAATAGATTTAAATAGACTAAATTAAGAAGACTGCTTGAC
AGGACAATTAGTACGAATCACTAAGGATTAGTACTCTTACTACGACTGTA
ACTTTGCAATTTTGATAAGTCTCCTCTCAAGCTTGCTGTGTCGCTTAACT
GTTTATAGATGTATATAGATTACTTATCTATGTTATAGGTCCCAAATGGT
GCATCTGAGCTATCTACCAATTATATTGCACAAAATATCATCGACAAAGT
GAAAAATGCTGCAAGAAAGGCCCTTTCTGTCAAGATTGTGTCGCCGAGTC
TCCTGCTTCAAACCATTGCGAAACTTGTGTTTTGAATTTATGTCAAAGAT
GCACAAAGTACCATCAAGAATGTGTCAGGTTTGTAAGTCATAAAATTATT
GACATACAAAATGTATCTAAGAAGATTTCTAGTTCGAAGCGTTACTATCC
GAAACATAATGAGCTGTTGAAATATTTTTGCCAGCAATGCAAGGTTGTCG
TATGTAATGATTGTTGTATGATAAGTGCACAACATAAAAATCATGATATT
ACATTGGTGTCGGAAGCTATCGACAAAGCCAAAGAAGAATTAAATCAAAA
GCTCAAAAAGATGAGAGAGAGTGAGTTAACAATGGTTGAATGCCTTGGAA
AAGTCAAAGAATTTCACCAAAAAATTGCTGCAGAAGAGGAAAACAATGCT
AATATGATCAAACAAGCTTTTAATGAAATAAGATTTGTTCTTGCCAAGAA
GGAAGAAGAACTGGTAAAACAGCTTGCAACAATTAGAGCAGACAAAAAGG
AGAAGCTTAAATTGGACAGATTTTCATCAGCAACCAGCAAAGTTTCCCAA
TCTGTACAATACGTTGAATCTATCCTGAATGAAAATTGTGATGATCTAGA
TATCATATGTGATCTCACAAAACAATTGGATGAAATCTGCAAGGAATATA
GTTTGAATGGTACGTTTATTGTATCTTCTACACCTCTACCTTTATATTTG
CAACTGAAAGGAAAATCAACGAAACCACCTCTTCTGATCCTCAAGAGTAA
GGCAATGTTAACACTGTATCATAAAAATGCGCTCTCAGGAAGTTCGCTGG
GCTTTGATATGAGGCTAAAAAAGTATTCAATCAATCCTAGCAGGGATGCA
TTGATATCTGAGCAAATAGGAGCCTTGTCATTATCGTAATAATTTGTATA
ACAATATTGGATGATAATTATAAACAAAATAACTAAAACAATGATGCATA
CACAATCATATATATATGATTGATCGTATATTTTACAAATATTTGTTGTT
GTTTTTTATCCTATTTTTATTACCACAATTGATATTCTATCATTATTATA
TTCACACCAATCCAAAGTAATCTTAAAAACTGTAAATTTATGCTCCGTCA
ATCCTGTAGAATTATAAGAGAAAATACATACATCTTTAAGGGAAAGTATG
AATGTAAATTTTTCCTATCAAAGTTACTAGGTTGCTATGTTTATACATTA
ATTTTTAGAATTTTTCTATAAAATGCGATTTATTTAGCACAGAGTGCCTA
TGGATATATTTTTCAAGGGTCTTTTTTTAATTCCGGTATTTGAAAGACAA
CAATCTTCATAAACGTTAAATTTTATTTTTCAGTAACGAAATTCTTACAA
TTAATACTGTGCTTATTACTTGTTCATTATTGTTTCATTGTTTTGTTGTT
TTGTTGTTTTGTTTGGGGTATCAAAATATTAATGAATTTGAAAGATGCAT
GAGAGTTACAAAGTTACTTTTATGGTCGTATCAACCCTTAGGATAAATCG
GTATTCAGTCATTGTTTCAATGCTGTCAAGAATTTAATGAATAACTGCTT
TACACAAAAGAAGAAATTTTGTGAAATTTGCGTTGAAAAAGCTCTGCAAA
ATTGTCACTTCTTCTCGCAAATTCTAAAATCTATGTGTCCCTTGATAATT
TTCAACAGTAATAATCTTTTGCATTCTTTTAGATAAAAAGTGGAAAAAAT
ACGAAAATATAAAATGAAAAAGTAAATAACATAATACTATCAGCTGCTTC
CAATAAATAATCCTGAACGGTTACTAGAATGGCTGGTGTGGAAGTTGGAC
AAGAGTTGGAATGTTGCGTTTGTTTGGATCAATTTGTAAAACCAAAGCTT
TTGAATTGTATGCACACTTTATGTGAGGGATGCATCGACAAACTGATTCA
GAGTAGAACTGTTAAATGCCCTGAATGTCGAGAAGAAACCAAGGTTTGTT
TCAATATTTTACTGATCTTACTGAATATTACTTTTACTGCTTCTATGAGA
TCAATCAGAGAACATCACTGGTGTTTGTGATCGATACGGTACAGTCAGAA
CACACCTATCAATCATCCTTAAACAGTACAGTTTTAGAAAAGCCCCNCGA
TACGGTACAGTCAGAACACACCTATCAATCATCCTTAAACAGTACAGTTT
TAGAGGAGGCCCCCCAGTGGTTTGCGTGATGGCGTGATTGGGACTTTTTT
CTTGCGTGATGGCGTGATTAGAGATTTTTTTTTGGCGTGATAGGGCAAAA
ATTTGAGGCGTGATGCGTGATTTGGGCTATTTTTTGCTATTTTTTGCGTG
ATGACAAATTTTAGCGATTTTCTTGATGCGTGATTGAGAAAATTTTTTTG
CGTGATGGCGTGATTAGGGGTGCCGCTGGAGGGGGCCTCTGAGAGGTAAT
AAATTCACAGGAAATTCTCATTTTCAAGCGACATCTTCAAACGAAAGCAG
CACAGAAGCTTATTCTAGCACAAACTCTATTCTCGCTGAGGGAATCTTTG
CGTTGGAGCGCAAATAATCTCTACCTGTTCCTATTTTAATTGAGCCATTT
GCCTATAGATAGACATATGTATGATACAATTATAAAAGATGTGCACATAG
AAGGTGTTGTCGGTGCTTTTTTTAGCTCTATGTTTTTTAAGGTATGTGTT
CACCTTTCTTGACACATTCTCTTTAATTGATCATATCTTTAGAACAACAA
ATTTTTGGACCTACCTGGAGGTCCTATAAATTAACCTATGTTCGTCCGTC
CGTCTGTTACCAGCTTTTCTCGAGATTGGCTCATTAGTTTTTTCTGATTT
TTGGCACAAAGATGCAAAATGGCAATGCCCAAAATGTGACGGAGCCCGAT
TTTCGAAAAAAAAAATTTCCGGCCGAAAATAACGGAAATATGCCGGAAAA
ACCGGTTTTTTGACATTTTCTCGAGATTTCATCATTAGTTTTTTCTGATG
TTTTGCTTAAAGATGCGTATTAACAATGCCCAAAACATGACCGGGTCCGA
TTTTTGAGAAAAAAATTTTTCCAGCTGAAAATGCCGGAAATATGCCGGAA
ATCACCGTTTTTCTGAATTTTCATTAGACTTTTTCCTTATAATTGGTTGT
TTTTTCCTTCAAAAACATTATTAATAGCAATGCCCACCATCAAGCATTTT
TCAATTTTCAATAGAATTGATTTTTGAAGTCGGAACTATTAAAAAATCGC
CGGAACAACCTCTATTCGCCGGAAAGACAGTATTTCTTGAATTTCTCGAG
CTGTACTTTATATTTTTTTATGAAATTTTGCACACTGATGCAAAATGACA
GTACCTAAAGTGTGACAGAGCCCGATTTTCGAAAAACATTTTTTTCCGGC
TGAAAATGCCGGGAATATGCCGGAAAACCGGTTTTTTTGACATTTTCTCG
AATTTTCATCCTTAGTTTTTTTCTGATTTTTTGCAGAAAGATGCGTATGC
GCATTACTCAAAACATGACAGAGTTCGATTTTTTGAGAAAATTTTTTTTC
CGGCCGAAAATGCCGGAAATCGCCGTTTTTGTTTTCTAGAAACCTTCTTT
ATTAAGCTGTGCGTTTTTTCTGATAGTGTATTGTTTTTATAAAGAAAAGC
GTTTAATAACTTTTTACTTTTTTTTCATAAGTATTTTTCAATAGTATTGA
TAATTTCTACCAATAGATATGCTTCCATTTTATATATTTTTGTATTTTGA
CCAGTTATGTCTTATGTGTTTCATTGTTTCAATGTTCATTGGTTAGTTTT
GGTAACCAGGTAGGTCAATAAAAGTATCACTTGTTATACATCAAAAGTAT
ATATTTTCTGAAAGCCAATAATATTCTCTTTCTAATGGTAAAAGTTTCAG
CTGAATTTAAAAAACTGGGCAGGATATAATTANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAAAATAATTTCGATACTATGTTCC
CAATAGATCGAACTAAAAAAGTGTCTTGGGATTTTTTTTGGAATTGACTT
TAACTCTTTAAATCCTAAATTCTGTAAAAACATCGATACAAAAGTAAATT
AAAATGTGATTTTTTCAGTTATCTGTAAATTGAGGAAAAACAACTCGGTT
AGAAATAAAATCCTAAGACACTTTTTAAGTTTGATCTTTTGGGAATCTCA
TAAAAAAAGAATGAAGTCGATATCTAAATGCTATGGGTGACTTTAACTTC
GTTAAAAGTAGTATGGTGTGTTAAAATTCCGTTTTTTTCTACATCAATTT
GAAATTTTTAACGAGATGATTGCTGTTTATTTGATTAATCAGTGAAATGT
GTCAAAAATATTACTATTCAATAGAGGTGAGAATAAACATCAGCTGAATT
CTCTCTTTTGTCTTTGTTGTTTCCGAAAGAGACAATTATTTGAGTAAATA
ATCCATCATAAGACGAACTTTGTTTTGAAATTTAAATGGTTATAACTCTA
GATCAAAAAAAGATTTTAAGATCGCAATTTTACCAAAATGAAATCCAGTA
ACTTTTCTTCCACTTTGACTGAAAAAAATTTTTTTGACAAAAAATCGGAA
AAAAGGTGTACACATACCTTAAGCGATTGAAATAATGATAATAGAGTTAA
ATAGAAATATTAAGAAAATTGCTTCTAGAGTAAATCACTCAGGATCAGTA
CTCTTACTACTACTGTAACTTTACAATTTTTGTAAGTCTCCTCTCAAGCT
TGCCGCGTCGCTTAACTGTTTATAGATGTATGTATATAGATTACTTATCT
ATGTTATAGGTCCCTAATGGTGCAGCTGAGCTATCTACCAATTACATTGC
ACAAAATATTATCGAAAAAGTGAAAAATGCTGCAAAGAAAGGCCCATTTT
GTCAAGATTGTGTCGCCGAGTCTCCAGCTTCAAACCATTGCGAAACTTGT
GTTTTAAATTTGTGTATAAAATGCACTGAATATCATCAGAGTTGTGTGAG
GTTTGTAAATCATAAAATTATTGACATACAAAATGTCACAAAGAAAATCT
CTAGTCCGAAACGTTACTGTCCAAAACATAATGAGCTGTTGAAATATTTT
TGCCAGCAATGCAAGGTGGTTGTTTGTACTGATTGTATGGTCAGTGTAGA
GCACAAACAACATAACATCTCCTTGGTGTCAGAAACTACTGCCAAAGCTA
AAGAGGAATTGAAGCAAAAACTTGAAAAGATGAAAGACAAGAAGCAAACA
ATGGGTAATTGTCTCCAACAAGCAAAGTCTTTTTATAAAGATGTTATAGA
TGAAGATATAGCGAGCGTTGAATTAATCAAGAAAACTTTCAACGAAGCGC
GAAGTATTCTCGCTGAAAAGGAAGAGCAGCTCATTGCTCAAGTTCAAGCC
CAAAGCATGTCAAAAGGTGAAAATAAGCTTAATCTTGATAAATTCTCAAA
GGCTGTTCATGCAGTCACTCAGACAGCAAATTATGTGGAATCTGTCGTAA
AGGAAAATTGTGATGATCTGGAGATGATTAGTGAAATGTCCAAATAGATG
GATAAAGTCTTCCAAGAATATTATCTTGATGAACCCATTACACTCATTTT
CCAGTGGGCCTTCACTATTCTTCAGAAAATTCTTTTTTCTGCAGAGCTCC
CAATGTAATCAGATTTTCTGTGAATCATCGAATACCATGAATGTTACGCA
AACAATATATGAAAAGTTCTAGGCAAAAGCCCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015761-exon-sc0000216-1575043694:86764..86952 | TCONS_00015761-exon-sc0000216-1575043694:86764..86952 | Clytia hemisphaerica | exon |
| TCONS_00015761-exon-sc0000216-1575043694:85950..86164 | TCONS_00015761-exon-sc0000216-1575043694:85950..86164 | Clytia hemisphaerica | exon |
| TCONS_00015761-exon-sc0000216-1575043694:80218..80927 | TCONS_00015761-exon-sc0000216-1575043694:80218..80927 | Clytia hemisphaerica | exon |
| TCONS_00015761-exon-sc0000216-1510915933:86764..86952 | TCONS_00015761-exon-sc0000216-1510915933:86764..86952 | Clytia hemisphaerica | exon |
| TCONS_00015761-exon-sc0000216-1510915933:85950..86164 | TCONS_00015761-exon-sc0000216-1510915933:85950..86164 | Clytia hemisphaerica | exon |
| TCONS_00015761-exon-sc0000216-1510915933:80218..80927 | TCONS_00015761-exon-sc0000216-1510915933:80218..80927 | Clytia hemisphaerica | exon |
| TCONS_00015761-exon-sc0000216-1491911889:86764..86952 | TCONS_00015761-exon-sc0000216-1491911889:86764..86952 | Clytia hemisphaerica | exon |
| TCONS_00015761-exon-sc0000216-1491911889:85950..86164 | TCONS_00015761-exon-sc0000216-1491911889:85950..86164 | Clytia hemisphaerica | exon |
| TCONS_00015761-exon-sc0000216-1491911889:80218..80927 | TCONS_00015761-exon-sc0000216-1491911889:80218..80927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000216 | supercontig | sc0000216:80218..86952 - |
Blast
BLAST of TCONS_00015761 vs. Swiss-Prot (Human)
Match: TRI56 (E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens GN=TRIM56 PE=1 SV=3) HSP 1 Score: 66.2402 bits (160), Expect = 2.424e-18 Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1
Query: 52 LECCVCLDQFVKPKLLNCMHTLCEGCIDKLIQTGTIKCPECRE*TKV-PNGASELSTNYIAQNIIDKVKNAA 264
L C +CL+Q PK L C+HT C+ C+ +L G ++CPECRE V P G + TN+ ++D VK A
Sbjct: 19 LACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCPECRETVPVPPEGVASFKTNFFVNGLLDLVKARA 90 HSP 2 Score: 43.8986 bits (102), Expect = 2.424e-18 Identity = 28/108 (25.93%), Postives = 45/108 (41.67%), Query Frame = 3
Query: 243 RQSEKCCKKGPFCQDCVAESPASNHCETCVLNLCQRCTKYHQECVRFV-SHKIIDIQNVTKKISSPKRY------CPKH-NELLKYFCQQCKVVVCTDCMVSVEHKQH 542
R + C P PA+ C C +LCQ C H+ C R +H+++D+ + CP+H E L++ CQ C ++C +C + H H
Sbjct: 95 RAGKPACALCPLVGGTSTGGPATARCLDCADDLCQACADGHR-CTRQTHTHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEALRFLCQPCSQLLCRECRLD-PHLDH 200
The following BLAST results are available for this feature:
|
