TCONS_00015760 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015760
Unique NameTCONS_00015760
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1183

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015760 ID=TCONS_00015760|Name=TCONS_00015760|organism=Clytia hemisphaerica|type=transcript|length=1183bp
aaagtggaaaaaatacgaaaatataaaatgaaaaagtaaataacATAATA
CTATCAGCTGCTTCCAATAAATAATCCTGAACGGTTACTAGAATGGCTGG
TGTGGAAGTTGGACAAGAGTTGGAATGTTGCGTTTGTTTGGATCAATTTG
TAAAACCAAAGCTTTTGAATTGTATGCACACTTTATGTGAGGGATGCATC
GACAAACTGATTCAGAGTAGAACTGTTAAATGCCCTGAATGTCGAGAAGA
AACCAAGGTCCCTAATGGTGCAGCTGAGCTATCTACCAATTACATTGCAC
AAAATATTatcgaaaaagtgaaaaatgctgCAAAGAAAGGCCCATTTTGT
CAAGATTGTGTCGCCGAGTCTCCAGCTTCAAACCATTGCGAAACTTGTGT
TTTAAATTTGTGTATAAAATGCACTGAATATCATCAGAGTTGTGTGAGGT
TTGTAAATCATAAAATTATTGACATACAAAATGTCACAAAGAAAATCTCT
AGTCCGAAACGTTACTGTCCAAAACATAATGAgctgttgaaatatttttg
ccAGCAATGCAAGGTGGTTGTTTGTACTGATTGTATGGTCAGTGTAGAGC
ACAAACAACATAACATCTCCTTGGTGTCAGAAACTACTGCCAAAGCTAAA
GAGGAATTGAAGCAAAAACTTGAAAAGATGAAAGACAAGAAGCAAACAAT
GGGTAATTGTCTCCAACAAGCAAAGTCTTTTTATAAAGATGTTATAGATG
AAGATATAGCGAGCGTTGAATTAATCAAGAAAACTTTCAACGAAGCGCGA
AGTATTCTCGCTGAAAAGGAAGAGCAGCTCATTGCTCAAGTTCAAGCCCA
AAGCATgtcaaaaggtgaaaataagcTTAATCTTGATAAATTCTCAAAGG
CTGTTCATGCAGTCACTCAGACAGCAAATTATGTGGAATCTGTCGTAAAG
GAAAATTGTGATGATCTGGAGATGATTAGTGAAATGTCCAAATAGATGGA
TAAAGTCTTCCAAGAATATTATCTTGATGAACCCATTACACTCATTTTCC
AGTGGGCCTTCACTATTCttcagaaaattcttttttctgcAGAGCTCCCA
ATGTAATCAGATTTTCTGTGAATCATCGAATACCATGAATGTTACGCAAA
CAATATATGAAAAGTTCTAGGCAAAAGCCCACT
Run BLAST on NCBI

transcript from alignment at sc0000216:80218..84366-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015760 ID=TCONS_00015760|Name=TCONS_00015760|organism=Clytia hemisphaerica|type=transcript|length=4149bp|location=Sequence derived from alignment at sc0000216:80218..84366- (Clytia hemisphaerica)
AAAGTGGAAAAAATACGAAAATATAAAATGAAAAAGTAAATAACATAATA
CTATCAGCTGCTTCCAATAAATAATCCTGAACGGTTACTAGAATGGCTGG
TGTGGAAGTTGGACAAGAGTTGGAATGTTGCGTTTGTTTGGATCAATTTG
TAAAACCAAAGCTTTTGAATTGTATGCACACTTTATGTGAGGGATGCATC
GACAAACTGATTCAGAGTAGAACTGTTAAATGCCCTGAATGTCGAGAAGA
AACCAAGGTTTGTTTCAATATTTTACTGATCTTACTGAATATTACTTTTA
CTGCTTCTATGAGATCAATCAGAGAACATCACTGGTGTTTGTGATCGATA
CGGTACAGTCAGAACACACCTATCAATCATCCTTAAACAGTACAGTTTTA
GAAAAGCCCCNCGATACGGTACAGTCAGAACACACCTATCAATCATCCTT
AAACAGTACAGTTTTAGAGGAGGCCCCCCAGTGGTTTGCGTGATGGCGTG
ATTGGGACTTTTTTCTTGCGTGATGGCGTGATTAGAGATTTTTTTTTGGC
GTGATAGGGCAAAAATTTGAGGCGTGATGCGTGATTTGGGCTATTTTTTG
CTATTTTTTGCGTGATGACAAATTTTAGCGATTTTCTTGATGCGTGATTG
AGAAAATTTTTTTGCGTGATGGCGTGATTAGGGGTGCCGCTGGAGGGGGC
CTCTGAGAGGTAATAAATTCACAGGAAATTCTCATTTTCAAGCGACATCT
TCAAACGAAAGCAGCACAGAAGCTTATTCTAGCACAAACTCTATTCTCGC
TGAGGGAATCTTTGCGTTGGAGCGCAAATAATCTCTACCTGTTCCTATTT
TAATTGAGCCATTTGCCTATAGATAGACATATGTATGATACAATTATAAA
AGATGTGCACATAGAAGGTGTTGTCGGTGCTTTTTTTAGCTCTATGTTTT
TTAAGGTATGTGTTCACCTTTCTTGACACATTCTCTTTAATTGATCATAT
CTTTAGAACAACAAATTTTTGGACCTACCTGGAGGTCCTATAAATTAACC
TATGTTCGTCCGTCCGTCTGTTACCAGCTTTTCTCGAGATTGGCTCATTA
GTTTTTTCTGATTTTTGGCACAAAGATGCAAAATGGCAATGCCCAAAATG
TGACGGAGCCCGATTTTCGAAAAAAAAAATTTCCGGCCGAAAATAACGGA
AATATGCCGGAAAAACCGGTTTTTTGACATTTTCTCGAGATTTCATCATT
AGTTTTTTCTGATGTTTTGCTTAAAGATGCGTATTAACAATGCCCAAAAC
ATGACCGGGTCCGATTTTTGAGAAAAAAATTTTTCCAGCTGAAAATGCCG
GAAATATGCCGGAAATCACCGTTTTTCTGAATTTTCATTAGACTTTTTCC
TTATAATTGGTTGTTTTTTCCTTCAAAAACATTATTAATAGCAATGCCCA
CCATCAAGCATTTTTCAATTTTCAATAGAATTGATTTTTGAAGTCGGAAC
TATTAAAAAATCGCCGGAACAACCTCTATTCGCCGGAAAGACAGTATTTC
TTGAATTTCTCGAGCTGTACTTTATATTTTTTTATGAAATTTTGCACACT
GATGCAAAATGACAGTACCTAAAGTGTGACAGAGCCCGATTTTCGAAAAA
CATTTTTTTCCGGCTGAAAATGCCGGGAATATGCCGGAAAACCGGTTTTT
TTGACATTTTCTCGAATTTTCATCCTTAGTTTTTTTCTGATTTTTTGCAG
AAAGATGCGTATGCGCATTACTCAAAACATGACAGAGTTCGATTTTTTGA
GAAAATTTTTTTTCCGGCCGAAAATGCCGGAAATCGCCGTTTTTGTTTTC
TAGAAACCTTCTTTATTAAGCTGTGCGTTTTTTCTGATAGTGTATTGTTT
TTATAAAGAAAAGCGTTTAATAACTTTTTACTTTTTTTTCATAAGTATTT
TTCAATAGTATTGATAATTTCTACCAATAGATATGCTTCCATTTTATATA
TTTTTGTATTTTGACCAGTTATGTCTTATGTGTTTCATTGTTTCAATGTT
CATTGGTTAGTTTTGGTAACCAGGTAGGTCAATAAAAGTATCACTTGTTA
TACATCAAAAGTATATATTTTCTGAAAGCCAATAATATTCTCTTTCTAAT
GGTAAAAGTTTCAGCTGAATTTAAAAAACTGGGCAGGATATAATTANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATAATTT
CGATACTATGTTCCCAATAGATCGAACTAAAAAAGTGTCTTGGGATTTTT
TTTGGAATTGACTTTAACTCTTTAAATCCTAAATTCTGTAAAAACATCGA
TACAAAAGTAAATTAAAATGTGATTTTTTCAGTTATCTGTAAATTGAGGA
AAAACAACTCGGTTAGAAATAAAATCCTAAGACACTTTTTAAGTTTGATC
TTTTGGGAATCTCATAAAAAAAGAATGAAGTCGATATCTAAATGCTATGG
GTGACTTTAACTTCGTTAAAAGTAGTATGGTGTGTTAAAATTCCGTTTTT
TTCTACATCAATTTGAAATTTTTAACGAGATGATTGCTGTTTATTTGATT
AATCAGTGAAATGTGTCAAAAATATTACTATTCAATAGAGGTGAGAATAA
ACATCAGCTGAATTCTCTCTTTTGTCTTTGTTGTTTCCGAAAGAGACAAT
TATTTGAGTAAATAATCCATCATAAGACGAACTTTGTTTTGAAATTTAAA
TGGTTATAACTCTAGATCAAAAAAAGATTTTAAGATCGCAATTTTACCAA
AATGAAATCCAGTAACTTTTCTTCCACTTTGACTGAAAAAAATTTTTTTG
ACAAAAAATCGGAAAAAAGGTGTACACATACCTTAAGCGATTGAAATAAT
GATAATAGAGTTAAATAGAAATATTAAGAAAATTGCTTCTAGAGTAAATC
ACTCAGGATCAGTACTCTTACTACTACTGTAACTTTACAATTTTTGTAAG
TCTCCTCTCAAGCTTGCCGCGTCGCTTAACTGTTTATAGATGTATGTATA
TAGATTACTTATCTATGTTATAGGTCCCTAATGGTGCAGCTGAGCTATCT
ACCAATTACATTGCACAAAATATTATCGAAAAAGTGAAAAATGCTGCAAA
GAAAGGCCCATTTTGTCAAGATTGTGTCGCCGAGTCTCCAGCTTCAAACC
ATTGCGAAACTTGTGTTTTAAATTTGTGTATAAAATGCACTGAATATCAT
CAGAGTTGTGTGAGGTTTGTAAATCATAAAATTATTGACATACAAAATGT
CACAAAGAAAATCTCTAGTCCGAAACGTTACTGTCCAAAACATAATGAGC
TGTTGAAATATTTTTGCCAGCAATGCAAGGTGGTTGTTTGTACTGATTGT
ATGGTCAGTGTAGAGCACAAACAACATAACATCTCCTTGGTGTCAGAAAC
TACTGCCAAAGCTAAAGAGGAATTGAAGCAAAAACTTGAAAAGATGAAAG
ACAAGAAGCAAACAATGGGTAATTGTCTCCAACAAGCAAAGTCTTTTTAT
AAAGATGTTATAGATGAAGATATAGCGAGCGTTGAATTAATCAAGAAAAC
TTTCAACGAAGCGCGAAGTATTCTCGCTGAAAAGGAAGAGCAGCTCATTG
CTCAAGTTCAAGCCCAAAGCATGTCAAAAGGTGAAAATAAGCTTAATCTT
GATAAATTCTCAAAGGCTGTTCATGCAGTCACTCAGACAGCAAATTATGT
GGAATCTGTCGTAAAGGAAAATTGTGATGATCTGGAGATGATTAGTGAAA
TGTCCAAATAGATGGATAAAGTCTTCCAAGAATATTATCTTGATGAACCC
ATTACACTCATTTTCCAGTGGGCCTTCACTATTCTTCAGAAAATTCTTTT
TTCTGCAGAGCTCCCAATGTAATCAGATTTTCTGTGAATCATCGAATACC
ATGAATGTTACGCAAACAATATATGAAAAGTTCTAGGCAAAAGCCCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008804XLOC_008804Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015760-exon-sc0000216-1575043694:84110..84366TCONS_00015760-exon-sc0000216-1575043694:84110..84366Clytia hemisphaericaexon
TCONS_00015760-exon-sc0000216-1575043694:80218..81143TCONS_00015760-exon-sc0000216-1575043694:80218..81143Clytia hemisphaericaexon
TCONS_00015760-exon-sc0000216-1510915933:84110..84366TCONS_00015760-exon-sc0000216-1510915933:84110..84366Clytia hemisphaericaexon
TCONS_00015760-exon-sc0000216-1510915933:80218..81143TCONS_00015760-exon-sc0000216-1510915933:80218..81143Clytia hemisphaericaexon
TCONS_00015760-exon-sc0000216-1491911889:84110..84366TCONS_00015760-exon-sc0000216-1491911889:84110..84366Clytia hemisphaericaexon
TCONS_00015760-exon-sc0000216-1491911889:80218..81143TCONS_00015760-exon-sc0000216-1491911889:80218..81143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:80218..84366 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.09243	3.49913	1.50911	1.43839	1.49513	1.30774	0.909149	1.16938	1.70241	2.46552	1.31298	1.80916	3.23473	2.42061	11.5454	8.39099	5.99236	6.69859	6.27819	7.07796	3.56964	4.10619	4.71741	6.20031	1.26045	1.07018	3.89317	1.62818	4.39081	2.98275
Blast
[Close]
BLAST of TCONS_00015760 vs. Swiss-Prot (Human)
Match: TRI56 (E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens GN=TRIM56 PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 2.200e-20
Identity = 54/183 (29.51%), Postives = 83/183 (45.36%), Query Frame = 3 
Query:  120 LECCVCLDQFVKPKLLNCMHTLCEGCIDKLIQSRTVKCPECREETKV-PNGAAELSTNYIAQNIIEKVKNAA----KKG-------PFCQDCVAESPASNHCETCVLNLCIKCTEYHQSCVRFVNHKIIDIQNVTKKISSPKRY------CPKH-NELLKYFCQQCKVVVCTDCMVSVEHKQH 611
            L C +CL+Q   PK L C+HT C+ C+ +L     V+CPECRE   V P G A   TN+    +++ VK  A    + G       P         PA+  C  C  +LC  C + H+   +   H+++D+          +        CP+H  E L++ CQ C  ++C +C +   H  H
Sbjct:   19 LACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCPECRETVPVPPEGVASFKTNFFVNGLLDLVKARACGDLRAGKPACALCPLVGGTSTGGPATARCLDCADDLCQACADGHRCTRQTHTHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEALRFLCQPCSQLLCRECRLD-PHLDH 200
The following BLAST results are available for this feature:
BLAST of TCONS_00015760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRI562.200e-2029.51E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens... [more]
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