TCONS_00015759 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015759
Unique NameTCONS_00015759
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015759 ID=TCONS_00015759|Name=TCONS_00015759|organism=Clytia hemisphaerica|type=transcript|length=1527bp
TTGTTTTCAGAATGTCGAAGcaaatgaagtttaactgagcTCGATGTATG
GATAACCTCTTTTCTTTATTGATAAAGTGTTAACTCGATCTTATGTCAGT
CGTAGTTTTCCTCGATTTTTTTACTCGATTATATTTGGTAAgtgtaattc
tttttttgattttactcgattaCATTCGGAATTGTGCTTTTGTTTTCTGA
TGCGATTGACGGTTAAGTTTCACATAAAGATCAATGGAGGCTGTTAAAAG
AGAGTTGTTTTCAGAATGTCGAAAcaaatgaagtttaactgagcTCGATG
TATGGATAACCTTTTTTCTTCATTGATATTGTGTTAACTCGATCTTATGT
CAATCGTAGTTTTCCGCGATTTCTTTACTCGATTATATTTGGTAAGTgtg
taagtattttttttcgGTTTTACTCAATTACATCGATTTATTTCGGAATT
TTACCTTTGACTTTTTCTGATGCGATTGATAATTAAGCTTCACATAAAGA
TCAATGGAGGCTGATAAAAGAGAGTTGTTTTCAGAATGTCGAAGcaaatg
aagtttaactgagcTCGATGTATGAATAACCTCTTTTCTTCATTGATATT
GTGTTAGCTCGATCTTATGTCATTCGTATTTACTCAATTATATTTGGTAA
AGTGTGTAAGTattatcccagctggcacacgacgttgtttcaacgttaat
ctaacgttaaatggacgttgtgaacgttacataaacgttgaaacaacgtt
gtgtgccagctgggataatTCGATTTTACTCGATTTTTTCGATTTAATTC
GGAATTTTACCTTTGACTTTTCCTGATTTGACTATGTCATTCGTAGTTTT
CCTCGATTCATCTACTCGGTTAGATTGACTGAATGCATTAGTGTGTTTCT
cgttttttgtcaatttttgtcGATTTTACTCTTTGTTTCTAGTTGACGAC
AACGACAACAATGGATGGTTAAGGAACCTGATGCAACCATCAGCGGATTC
TTCTTCTACATTACAATTTGTTAAGAATTAACACGATTGGTTGAGGGTAT
TGTTGAAGCTAAAAATAACCCATCAAACTAAGAGAACCCTGCACGTCGAC
CTCTTCAgATTTAATTGGTTTGGAGGAAAAGCCAACCAGACATACCCACA
ATGGCAGTAATCTTGGACGATGTGAATATCAAAATACCTGTAATGGAGTG
ATTTAATTTTGCTTTGATGTTGAGGACGTCTTTGGTCATTTATTTCTCGA
GATCCGTAAACATATTGTACAATGAACGATAGAGGAGATACAGAGATTGT
GATTCTGATTGGCTAATTGAGTTTTGTTATCCATATCTCTAAATTTATAG
ATAGTTAACTATATTGTTACCAGGCTTCTTCAAGCGCGGAGTTTACGCAA
AATACTTGGAGATTCCCGGAGTACGTGTAAGaccatcttttaaaaaaaaa
cttggactgttttagtatttccagtaccttttcaacattaaaagtAATGT
GTCAAATCATTTAGGTCAACCGCAggg
Run BLAST on NCBI

transcript from alignment at sc0000216:59828..62532-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015759 ID=TCONS_00015759|Name=TCONS_00015759|organism=Clytia hemisphaerica|type=transcript|length=2705bp|location=Sequence derived from alignment at sc0000216:59828..62532- (Clytia hemisphaerica)
TTGTTTTCAGAATGTCGAAGCAAATGAAGTTTAACTGAGCTCGATGTATG
GATAACCTCTTTTCTTTATTGATAAAGTGTTAACTCGATCTTATGTCAGT
CGTAGTTTTCCTCGATTTTTTTACTCGATTATATTTGGTAAGTGTAATTC
TTTTTTTGATTTTACTCGATTACATTCGGAATTGTGCTTTTGTTTTCTGA
TGCGATTGACGGTTAAGTTTCACATAAAGATCAATGGAGGCTGTTAAAAG
AGAGTTGTTTTCAGAATGTCGAAACAAATGAAGTTTAACTGAGCTCGATG
TATGGATAACCTTTTTTCTTCATTGATATTGTGTTAACTCGATCTTATGT
CAATCGTAGTTTTCCGCGATTTCTTTACTCGATTATATTTGGTAAGTGTG
TAAGTATTTTTTTTCGGTTTTACTCAATTACATCGATTTATTTCGGAATT
TTACCTTTGACTTTTTCTGATGCGATTGATAATTAAGCTTCACATAAAGA
TCAATGGAGGCTGATAAAAGAGAGTTGTTTTCAGAATGTCGAAGCAAATG
AAGTTTAACTGAGCTCGATGTATGAATAACCTCTTTTCTTCATTGATATT
GTGTTAGCTCGATCTTATGTCATTCGTATTTACTCAATTATATTTGGTAA
AGTGTGTAAGTATTATCCCAGCTGGCACACGACGTTGTTTCAACGTTAAT
CTAACGTTAAATGGACGTTGTGAACGTTACATAAACGTTGAAACAACGTT
GTGTGCCAGCTGGGATAATTCGATTTTACTCGATTTTTTCGATTTAATTC
GGAATTTTACCTTTGACTTTTCCTGATTTGACTATGTCATTCGTAGTTTT
CCTCGATTCATCTACTCGGTTAGATTGACTGAATGCATTAGTGTGTTTCT
CGTTTTTTGTCAATTTTTGTCGATTTTACTCTTTGTTTCTAGTTGACGAC
AACGACAACAATGGATGGTTAAGGAACCTGATGCAACCATCAGCGGATTC
TTCTTCTACATTACAATTTGTTAAGAATTAACACGGTAAGAACGAAATTT
CTCGAATAATTTGCTTTCTTTTTGAATTGTGCTTTATCTTATTACAGTCT
TCTTTTAATAAGAACAATCTCATGAGAATAAGGAGGCTCAAAATATGCCA
AAAATAAGAACAATTATTAGAACCAAAGCAGTGCCTGGATTTGCTAGAAA
ACCCAAGGTTTCTAACAACATACGTCCTCAGTTTCAATTACCCAGTGGGT
ATTTTAAAACACCAGATTTGATAACTTTTGCATCGATTATGTTATAGCAG
TAGGTGAATAAAAATTAAAGGAGACTTTTACTTTGTTCAATTTTTGGCAA
TTTGTTCACTTTTTTATCCACCGGGAAGATTTTATCGGGTCATCGATACA
GGGGTGTATATATAGGATTGATTAGAAGGATATAATGGTGCATGAATATA
TTTAACGGAAGTGTACGGTATTTTTCTACTGATTACTTTTCTGCTATTTT
ATAGATTGGTTGAGGGTATTGTTGAAGCTAAAAATAACCCATCAAACTAA
GAGAACCCTGCACGTCGACCTCTTCAGGTATTATATTTTTTGTTTGCATA
AATTTCTTATTCTTAAAGAGTTTCCTATATACTTATTATCATCACCACGC
CGCAAGGGCACAAAAATATTTAGAAGTGAAGGGGAGTTTTGCTCTCATTT
GTAATAACATCTGTACCTCCGTGGTTGGGTACTAGGTTTCTGGGATGACG
AGTATATGCCACCCGGACCCTTACAGGGATTTAATCGAGGAAAATGCAAA
TTTTTCTGAATCTTAATAAAAATTCGAAAATGAATTTGAGCTGTCTTATA
ACCCTTATGCAGCATTAAGGGGGGGGGGTGGAATTCGATTTTTGTGATTT
TTCTGATACTCTTTTTGCGATTTTGAAGATCCAAAAAACAGATCCTTAAT
AACGGCACATACCTGTACCCTTCTTTTGCCTATGTACCCCCCGGGTGCAG
TATTTACCCATTTGACTAATTTGGTTTTCAATAAGATGATGAGTTTACGG
GATTTTAATGCATATAAGATTTAGTCCGCTTCCTTATTTTTGGACACACA
TATATTTCATAAGCATTTAACTTAACCATTCCAACCTCGTCCTCTGCGTA
TTATCAATATTAACATTATTTTGATGCTTACTGATAACGCTAGATAATAT
TCTTTGGCGTCAATCAGTAACGTAAGTAAAACTGGGGAAGAGGTTACTTT
TCATTCTTGTTTCAATTTTATGACCTTTACTTTCAGATTTAATTGGTTTG
GAGGAAAAGCCAACCAGACATACCCACAATGGCAGTAATCTTGGACGATG
TGAATATCAAAATACCTGTAATGGAGTGATTTAATTTTGCTTTGATGTTG
AGGACGTCTTTGGTCATTTATTTCTCGAGATCCGTAAACATATTGTACAA
TGAACGATAGAGGAGATACAGAGATTGTGATTCTGATTGGCTAATTGAGT
TTTGTTATCCATATCTCTAAATTTATAGATAGTTAACTATATTGTTACCA
GGCTTCTTCAAGCGCGGAGTTTACGCAAAATACTTGGAGATTCCCGGAGT
ACGTGTAAGACCATCTTTTAAAAAAAAACTTGGACTGTTTTAGTATTTCC
AGTACCTTTTCAACATTAAAAGTAATGTGTCAAATCATTTAGGTCAACCG
CAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008803XLOC_008803Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015759-exon-sc0000216-1575043694:61498..62532TCONS_00015759-exon-sc0000216-1575043694:61498..62532Clytia hemisphaericaexon
TCONS_00015759-exon-sc0000216-1575043694:60956..61028TCONS_00015759-exon-sc0000216-1575043694:60956..61028Clytia hemisphaericaexon
TCONS_00015759-exon-sc0000216-1575043694:59828..60246TCONS_00015759-exon-sc0000216-1575043694:59828..60246Clytia hemisphaericaexon
TCONS_00015759-exon-sc0000216-1510915933:61498..62532TCONS_00015759-exon-sc0000216-1510915933:61498..62532Clytia hemisphaericaexon
TCONS_00015759-exon-sc0000216-1510915933:60956..61028TCONS_00015759-exon-sc0000216-1510915933:60956..61028Clytia hemisphaericaexon
TCONS_00015759-exon-sc0000216-1510915933:59828..60246TCONS_00015759-exon-sc0000216-1510915933:59828..60246Clytia hemisphaericaexon
TCONS_00015759-exon-sc0000216-1491911889:61498..62532TCONS_00015759-exon-sc0000216-1491911889:61498..62532Clytia hemisphaericaexon
TCONS_00015759-exon-sc0000216-1491911889:60956..61028TCONS_00015759-exon-sc0000216-1491911889:60956..61028Clytia hemisphaericaexon
TCONS_00015759-exon-sc0000216-1491911889:59828..60246TCONS_00015759-exon-sc0000216-1491911889:59828..60246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:59828..62532 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.63972	3.59902	1.20786	0.891552	0.505688	0.28069	0.167335	0.348861	0.452099	0.249947	0.332574	0.693792	0.738114	1.47673	1.10628	1.24121	0.793892	0.868056	0.830692	0.466443	0.909848	0.866051	3.0578	2.04898	1.17588	1.3508	3.69389	1.66454	1.30181	0.956012
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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