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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015757 ID=TCONS_00015757|Name=TCONS_00015757|organism=Clytia hemisphaerica|type=transcript|length=153bp
CACCGCCCACCACCCATCACCCATTACTTGTGGCGTATTCTGAGTAAATG
AATATACCCTCAACACTCATTGCATCAGGCACGCGAAGTTGAGAGCTAAA
TGGCTATGATTTATGATATTTATATCAGAATACGAAATTTTGGCGTGAAA
ATC Run BLAST on NCBI transcript from alignment at sc0000216:349924..359066+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015757 ID=TCONS_00015757|Name=TCONS_00015757|organism=Clytia hemisphaerica|type=transcript|length=9143bp|location=Sequence derived from alignment at sc0000216:349924..359066+ (Clytia hemisphaerica)
CACCGCCCACCACCCATCACCCATTACTTGTGGCGTATTCTGAGTAAATG
AATATACCCTCAACACTCATTGCATCAGGCACGCGAAGTTGAGAGCTAAA
TGGCTATGATTTATGATATTTATATCAGGTAATTTGAAGCATTTTGTgat
caaattaaattttcaacAATAACTTACTAACGTATGATAGTTATCGTTTA
TTGGTGCTAAATAGCCCTCTTGAGAAAGGTCAACTTATGCAAACACTTAA
TCAAAATTTGAGTTAAATTGAAGGGATATTTAATGTAAGGTAACTTCCAT
GACCATTTTTATCCATATAGGAGGGTTAATGTCTCTTTGCAGAGGATGCC
ATGCACTGTATTGAGCGGTCTAATATATAGTCGCCTTGTCTTGTAGCCTG
TTAGGTTGCGAGACACTGGTACACAGTTTTATGGATCGAGTGCATTAATA
TTGCGTGAACAAGGCCAGCGCATTCTTAACCTCATACACAGTGTTTAGAG
TGAAAGTCTTCTTGAGTATCTGCCTACCAAATTCCCCTCAAATGGCATGG
GTTGACACGGGCGAAGGTACATGCCAAGTAAACCACAACACCGAGTGGGA
CTcgaaccatagatttataaaagcccgaagagctagatagagtgcttttg
ctgaaaagtgtgccgaggttaggtatgAAATCccacctaggtcacgtgac
attacaatagaagcttcgcgggttttcgaaaacaatagcaacaatatttt
ttccgatattcacttttttttgcctgcgatggcttaaagcccgacatcta
gcccttcgggcttataaatCTATGACTCGAAGTCAGTAATCCCGGACGGC
AGACGAGATAACCACTACGGGTTAACAACACTTAACTTACATGTGGACTT
TTTATGTGTggactttttttcgcgaatcGAAGATCTGAAACTTTCGCGTC
GATTACTTACACATACATGCATAATTCATGCACTTGGAAATGACGACATT
GTCATTATCTCTCCACTGTCCCTGTCGTTTGCCGAACGAATTATTCCATC
ATTTCTGAGCCCAGTGTCTGGTTTTATGACCTTATTGAGTGTTTTCTGAA
GTCGACCTTTCTTTCTCGTCAAGTGGACGGGATCCCAAAGAATCAATTTC
GTAGCGGGTCAATTCGTTCTGCTGGCATCATGGCCGGTAATTTGCAGTCT
CTTTTGAAGTAAGCTGCTTACTTTTGGATGTGTCCCATACAAAACCTTGT
TTAACACACGTGAGCATCGGTGGGTCTACCAAATCCCCCTCAAATGGCAT
GGGTTGACACGGGCGAAGGTACATGCCAAGTAAACCACAACACCGAGTGG
GACTcgaaccatagatttataaaagcccgaagagctagatagagtgcttt
tgctgaaaagtgtgccgaggttaggtatgAAATCccacctaggtcacgtg
acattacaatagaagcttcgcgggttttcgaaaacaatagcaacaatatt
ttttccgaaattcacttttttttgcctgcgatggcttaaagcccgacatc
tagcccttcgggcttataaatCTATGACTCGAATCCAGGACGGCAGGCaa
gataaccactacactactgcggCCCAGGGAGGGTTAACAACNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNctgtaagggtgcaattttaaaagccaatttttggcc
cgcacataccgtcagtccgcaaacccagtgccccccccccgggttaacAA
CACCTAACTTACATGTGGACTTTTTCTGTGTggactttttttcgcgaatc
GAAGATCTGAAATCTTGGCTTTGATTACTTACACATCATAATTCATGCAC
TTGAAAATGACGGCATTGTCATATCTCTCCACTGTCCCTGTCGTTTCCCG
AACGAATTATTTCATCCTTTGTGAGCCCAGTTTCTGGTTCTATGACCTTA
TTGAGTGTTTTCTGCGGTCGACCTCGTTTCCTCTTCAAGTGGACGGGATC
CCAAAGAATCAATTTCATAGTTAATTCGTTCTAATGGCATCATGGCCGGT
AAGCTGCAGTCTCTTTTGTATTAAGCTGCTTACTTTTGGATGTGTCCCAT
ACAAAAATTTGTTTGACACGTGAACATCGGGTAGGCTCTGTCAAGTTTCT
TCATAAGGGCAGTCGTGATTGACCAAGATTGGCATGAAAAAAGGAGGATA
GATAACCTTGTGGCTTTGAAAAGGTAAATCTTGGTTTTTGAAGCAAAATG
GAGGTCGTCAAAACGAAGAAGAAGTGTCTACTTCTTCTTTTCTCAATAAT
GAATTTATCTTCATCGTTGAGAAACTTTCTGAGTGCATAGTACAGGACTA
GGATAAACAGATCAGGTGCAGTCAGATCGCCGTGTAGAACGTCGGTTATC
ACGTCAAAATGCTCTGTCAGGTGTCATGACCATTGCTGTGTTTGTTCAAG
ATTTTAATGGcgttgacaatttttttctggaataccATAGGCAAGAAGAA
TCTTGTACATAGTCTTGCTTTCAATACTATCATCTGCATCGGTTGACAGA
GATTATTAAAGCTCAAAACCGCAATTCAAACGACTTGAACTTGCCAAGGT
CTTTCTTAATTCAAACGTCTCAATCCTTGGAATCGTGGATCACAAAATCG
TTCACCTTGATACAGAGAAATCGACGATAAACTACACAAGACTACCTGGA
TGCGTAATGATGACCCGGTCGGCCTGGAGAAATACCCAAATTGCGGCTAA
TGGTGGAGTAGGTGTCCTCGTAAACAAAACTGATGAGAGTTCCTTTCCAG
TGTAAAAGGAATGATCCTTAATCGTTTCCAACCAGTTCTTGGCTCTCATT
TACTCCTGAATTAAAACGGGTTGAGACCAGGCAGATCGACACCGTTCCAG
ATGGTTGCAATCTACCAGTACAGTACTACTCTTCCTAGACTTTCGGAAGC
CCTTTGACAGCATGCATCGAGATAGAGTGTTCAGTATATGGAAACCATAT
ATGGGATACCAAACGAGCTCGGACAAGCAGTCaaactctttttcaaaaaa
aaacaagagcaAAAGTTCAATCTCCTGATGGAAACAGAAGAATTTTCCAT
CTTGGCTAAAGTACTTCAAGTCGACACACTTGCACCTTACCTCTTCACTA
ATCGTGCTTAAATACGTCACGAGAGAAGCTTCATCCAAAACAGGGAATCT
GGGGTTTACCTTAACTCGTCGCAGAGGCAAGACAATCTCTAATCAAGATG
AGTGACCTCGATTTTGCAGTCAACGCAGCACTCACACTCGAAACTTTGCA
AGAAACTTAAAAAACCTATTCTCTGGAATGGAAATTGAAGTTGCAAATGT
TAGTGTGAACGCTACCAAAACTGAAATGATCACTTAAAATCAGCAATATA
TAGTGTCAATTACATAAGGTACCTCGGCTCTTGGATTGATTCAACTACAA
AGGATATCAATGTCAGAAAAGTGTAAACATGTGTGGCATGCAATAAACTG
AATTGCAGAAAATTTGGAAATCAAATCTCTTCAGACACCTAAGATAATAA
GTGTACTCCTCTACGCGGATGTGAGACTGAAtgaataaaacaataaaaaa
attgattgttGGAACCTACACTCGACTACTAAGAACTGCATTGAACGTCA
ACTCGAGGGACCATGTCACAAACAAAGTTCTGCACGGTTCACTCCCAAAG
GTCACCAACAAAATTAAAGAGATAAGAATGAGAATGACTGGCCATTTAGA
ATTAATGATGGATTTGTTTTCACCCggcattttttcgaaatctaaccGAC
ACACATTTTTTCAATCCGGCGTTCGTTTGAAAACCAAGCGGGTCTAAGAT
GAAATTCAAtccatttcaattcaaaaatgatttatttgcCTGCATaatat
aaactaaaatttacaatatttgaaaattacaaTATAATTAGGTTGAGGAG
CAGGCCAGGCTCTGGCCATCCATATAGAGGTTACCCGACTAATCAATGGG
ATGACTACCTGGTTGCATGTTTGGGATTTTAATAATAGGGGAGGATTATT
AcacaacaataaaaaaattgcgatagaacaaaaaagaacaaaaaagtaTG
CTATTTAACAATTAGTactgtaaaatgaaaaataaaattctaactaattt
ttcaaataagtctcaacttaaaaaaagtaaagGTTCTCAAAGTTGAAGTA
CATGTAAGGACATAATTAAAGTTAGCTGTGTCGGAGATTATCGGCTCTTT
TGTTAAGCAGATACAGAGACAGTGAACTTAGGTCTTCTTTTGAGTGCAAT
AATAGTTGGTTtcagtttaaaatcgatttgtaTTTTACGGACTTTAAGCC
ATAGTTTAGGGTTTTAGCTTAGGTTCATATTTCTTGTTTGATATGCACGA
GACAATACTTTGAAATCAAGGGATTCCTGTAGTGCTGGTGGAGAGATTTT
GTTAATAGTTTGGTGTATAAGCTTGATGTTACACTTGAACATAGTTTGAG
CATAGATTGTAGGTATACCAGTAGTGTTTTCAAAGAGTTGAGAGGTTTCA
GCGTCAAAGTTGAAAAAGTGAGGATGCGAAGACATCGTTTTTAGAATCGG
CCAACTTTTGAGTTTTGAGTCGATTCTTGGCCCCATTGGCAATGTTTGCG
TACCATAAATGTGAATGGAAAATAGCATAGTAAAGAGTTTTATGATAGAA
ACAGGAACAAAATAACGAAGCTTAGCAAGTATACCATTTGCCATGCCAAG
TTTTTTTGCTAGATGGTCAAAATGAGAGTTCCAGGTTAGAAGTTCATCAA
GAAATAGCCCAAGGTATTTTACGCAAGTTGAGAGTTTCAGTTCGAAGTCA
TCAAGCTTTAGCTTCATTGAATAGGGAACGGACTTATGTCTGCTACGGAA
GAGCAACACTTCTGTTTTCAATACATTGAGTGAGATTTTATTTGCTCGGA
GCCAATAAAAGGAGAGTCGTGTAAGGTCAGAATCGACTTTGGTCTCTAGA
GACTGAAGGTCAGAATCAGAGGAGAGAAGTCAGGTATTATCAGCAATAAA
TTCGTTTGACTATTTTGAAGCACATAATGAAGCAAAGAAGATCAATGATA
TAGATGATAAAGAGAATAGGTCCAAGAACAGATCCTTGAGGTACTCCGTG
GTTAACAGGGCATTTAATAGAATCCACGCCAGAAACAGAGACGTATTGTT
GTCGGTCAGTAAGATATGATCGAAACCATTGATTAGATAAGCCCCTCACA
CCATAATAGTTAAGTTTAGAGAGCAGTTTTTCATGGTCGACCGTGTCAAA
AGCTTTTTGCAAGTCGATGAATACCCCGCAAGAGTAAAGTCCTTTGTCTA
TGTTAGATCTTATCATTTCCGTTAGGTTTATCAGTGCGTGAGTTGTAGAA
CATCTACTTCTGAAACGccaaattcatttttgaaaataatgttgtTGTCA
TCAAGAAAAGAAACTAAtctaaattttatgatttttttcgaaTATCTTAT
CGATGTTTGATAGTAGAGATATTGGGCGATAATTATTAACATCATGAGCG
GATCCCTTATGTTTAAAAATTGGAATTACTTTAGCTGTCTTGAGAGGAGT
GAAGAATTTACCTGTTTGTAGCGAGAGGATTTCTGACACCTCTGCTAATA
CAGTTTAAGGGAGTTAATAATTTTTGTTACCTCGTTAGATTGTACTGGTT
GAAAAATAGGGAGTTAGGAGGAGCATTTCGTAATGTTTCGTTAAAGTTTT
CGTCAGCTTTTTTGCTTGTAGCAGCCGGATCAGATGTCAGTTGACCATTA
ATGTTAAGAGTTATGTTATGGTGTCCACTattgtgtttttttcattttta
ttagcTCGCTTATACCTTTCCAgatatttttactgtttttaatgTTCGAG
TTGAAGTAATTGAAAAAAGTTTCGAACAACAAGTCGGGTTCATTGGCATA
ATGACCGCAGCATGTCATTCCAATTCACCTTGTGGAAATCGTCAGAAAGT
TTGGCATGATTTAAATTTTTCCATTTCCTATTTCCTTGACTTCGTGCCGT
TTGCCAGTTTGAAAGTTTTCTAAGATTAAATATTGAGGAAGATGATCAGA
TATGCCCGTCAAAAGGTTCCCGCTATGGGGTTTATATTTAGATGTAGTGA
AGAAGATGTTATCGATAAGTGTTCTCGACATGTCTGTAATTCTAGTTGGA
AGAGAGATACTTGGTAAGAGAAAGAAAGAGAGTTGCCGTATTCCAAAAGA
TGTATTAAAGTCTCCCATGAGAACGAGACGCTTCTTCtccttgttgtttt
tttgtaagaGTGGAATGAAGAAGTTTTTGCTGCAGGTTTCAATTTTAGAT
TGTTTATAGATACAACATACAATGACATTCTCCTGGTTCTCAAACATAAC
CGTGCAGAAAGTCGATTCAAGCTTTTTATCCGAATAGAGTATACTATAAA
TATCTTTTCTAGGTTTAAACTTTTAATAAGTCGTTTGAAATATAGAGTGC
CGTGCCCCAGCACTAGCCTTAGTGTTGGAGAAGAGAGATTTATAACCGTA
AATTTCAAGGTTATGTGGAGGGGAAGTTTCTGAAAGCCTAATCTCGGAGA
TTCCTAAAACTTTGAAGttgtgttcgattgcgattATTATTACACTGATC
AAAATGTTTTCACAGAGAGGAAATATTAAAATGTAAGAAGGAGAGATGCG
AAGAAGAATTTGTGAAAGCGAGCTTTAAAATCATTGACGTCAAGATATCT
ACACTCAAAAGAGTTAAAAGAGAGTTCTGTTCTCTGGAATATCTGAAAAC
AACGGGTGGAAATTGTGAAAACCTGAAGTCCTCCTCGTCCAGTTCGTAGC
ACATACTGAATGGGAAGTGACTGCAATTGCAGTCGATGCAAGACCCAACT
TGAGTGTCTGGAGATTACACTCATTATGAAAACAGTTCTGGCAAAAGTGA
CAAAAGAACGTTGGACCTCCTAAACCTACTAATAACTCATCATGCACATA
ACAAGTTGATTAAAAGTATTACGTCTAAGATTAATTCAGCAGCATAGCAA
CTTAGCAAATTGGTGCTTAGTTAtaaccatcaaaatcatcatcataaata
gagctttcaaTATCATAAATTAATTGAGAAAGTTCATTTTCGTCATTGAA
CGAATACACATACTTGTCATTTTTCTTCGAATCTTACTTTTAAGTTCCCG
TGAATATCGGCCTAAATGTAGTCAACTTGCTCACATTTTGAGAATCTGAC
CAGAATAGCGTTTAAAGTGTTCAATCGGAACCTTGTAAATGATGGCTTAA
CGTTGTATTTGTTGGATTTCTTTCTTTGGCTGTAAATTTTCTCGACCCTC
GAATGGCACTTGAAACGGACGATCACGCGTTGTTTGTTGTTCCTCACGGG
TCCTATCCGATGTGTTTTATCAAAGTCTGCTTTTAATTAATTTCTCTTAA
TCTGAAATTCTTTCGTGACGGCAGATTCAACTTTTCTTACCAGTTCTTGC
AGAGattcctttttgaaaaataagtggcttcatctCCTAAGTATCCTCAA
TTTCATCtctaacccttcgggctttaaagtCAATGGGTCCATAAGCAAAA
GCATAACATTCATATAGGCACTGGATAAAACATTTCTTTCCTTTGTTTAA
AAAACAATCCATGATTCTGTTATGTCTGCAAGGGACAACCGATCTTCAGA
GAATTAGAtaaaaaaggcttaaaatgATACATATTTTTAGCTTGGTAAAA
TTGTataaagtctgttccaaaaattTGCAGTCGGTACATTTTGAAggaga
aaaattttattttatttttcacagTGAACTTTTTTCTGCGCAAAGCATTG
TGAGTAATTCTGAGTAATAAtaagttttcacgttaagccgatatcatCTA
TTCTTTTGCTTTCAAGTCAGCAAATTAATTCAGTGGGATGGGAagaatag
cataatattttgcagtgaggattggtttatttgattattttcagtggggg
acaagaattggaggataattttccaccggggacgatattttggccaattt
ttgcAGGGAGAAGGGGATGTAAATATGTTTTCCGGTTTTTCATATCATTT
TAAGAGCAAAAGTTACAGTCCTCCTAAGTAGgctaattaaaatgtttttt
attgaaggaaaaagagagaaaaataatGCTATTTTATCACTGCAGAAATA
AGCTAAAACTAGTCTACTTAatacagctccaggcttttaggccttttagg
tctataggcactgctatatgCAGCCATTAGTAACCCACATGCGAtttatc
cggagaatttcaatattcaaaacaagagcagtgctcatagcccgaagagt
aggagttttacactcgaaacgaaggaatatatgacgtagcctaagcTAGA
ACATGAGATATCAATGAGTTCAGTTTTTAAATTTATGGCTAAATCAAACG
GTGCTTACGGAATCATAATTCTCTAGTTTCATTTGATTCTATCGCACAGT
CTCATTCAAttagtttatttatttattgtgAATGATAGGAGAATCCAAAT
CGGCCTGTCCATGAGTTCCTTATTCTGTTTGTTGAGATATAAAAAACGTT
TCTTTCCTTGTTTTTCAGAATACGAAATTTTGGCGTGAAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015757-exon-sc0000216-1491911889:349924..350051 | TCONS_00015757-exon-sc0000216-1491911889:349924..350051 | Clytia hemisphaerica | exon |
| TCONS_00015757-exon-sc0000216-1510915933:349924..350051 | TCONS_00015757-exon-sc0000216-1510915933:349924..350051 | Clytia hemisphaerica | exon |
| TCONS_00015757-exon-sc0000216-1575043694:349924..350051 | TCONS_00015757-exon-sc0000216-1575043694:349924..350051 | Clytia hemisphaerica | exon |
| TCONS_00015757-exon-sc0000216-1491911889:359042..359066 | TCONS_00015757-exon-sc0000216-1491911889:359042..359066 | Clytia hemisphaerica | exon |
| TCONS_00015757-exon-sc0000216-1510915933:359042..359066 | TCONS_00015757-exon-sc0000216-1510915933:359042..359066 | Clytia hemisphaerica | exon |
| TCONS_00015757-exon-sc0000216-1575043694:359042..359066 | TCONS_00015757-exon-sc0000216-1575043694:359042..359066 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000216 | supercontig | sc0000216:349924..359066 + |
Blast
The following BLAST results are available for this feature:
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