TCONS_00015756 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015756
Unique NameTCONS_00015756
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015756 ID=TCONS_00015756|Name=TCONS_00015756|organism=Clytia hemisphaerica|type=transcript|length=501bp
ATTGGAGGGCTTTTAGTCCAGCATCTACCTCAGTGAAATGCGCATGATGA
CGATGGCTTTAACATAAACAAATCTTGCAATTCTTTCATTGATCACTCCT
TCCTATCCACTAACTAGGTAGGAtaatatatttcctttaaaACTTCCTCT
ACTGGATAGGATAAGATCTACAGCAGTGTGATTGGTTCGAAATAGACTTT
TTTTGAGAGAAGACCCGCGACATGTTGTTTGGGGTACCATACCTTTGAAG
CGAACCGCGGCATGTTGTTGGGGGTACCATACCTTTGAAGCGAACATAGA
TTGAGAGTAGTTTGCACcccctttgaaaaaaatatttttagggccTTTTT
GCAAGGGGGAGGGGTATCAAAATCTGCCTAAAAACCTGGGGGATGGGAAT
GTAACAGGGATAATATAAGGGGGTTGGACATTATGGTCAATTTAATCATA
TAAAAAATGGTCACAGTCTgttcaaaactaaaaatatcatagtgtcctcc
c
Run BLAST on NCBI

transcript from alignment at sc0000216:333198..333698+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015756 ID=TCONS_00015756|Name=TCONS_00015756|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at sc0000216:333198..333698+ (Clytia hemisphaerica)
ATTGGAGGGCTTTTAGTCCAGCATCTACCTCAGTGAAATGCGCATGATGA
CGATGGCTTTAACATAAACAAATCTTGCAATTCTTTCATTGATCACTCCT
TCCTATCCACTAACTAGGTAGGAtaatatatttcctttaaaACTTCCTCT
ACTGGATAGGATAAGATCTACAGCAGTGTGATTGGTTCGAAATAGACTTT
TTTTGAGAGAAGACCCGCGACATGTTGTTTGGGGTACCATACCTTTGAAG
CGAACCGCGGCATGTTGTTGGGGGTACCATACCTTTGAAGCGAACATAGA
TTGAGAGTAGTTTGCACcccctttgaaaaaaatatttttagggccTTTTT
GCAAGGGGGAGGGGTATCAAAATCTGCCTAAAAACCTGGGGGATGGGAAT
GTAACAGGGATAATATAAGGGGGTTGGACATTATGGTCAATTTAATCATA
TAAAAAATGGTCACAGTCTgttcaaaactaaaaatatcatagtgtcctcc
c
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008800XLOC_008800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015756-exon-sc0000216-1491911889:333198..333698TCONS_00015756-exon-sc0000216-1491911889:333198..333698Clytia hemisphaericaexon
TCONS_00015756-exon-sc0000216-1510915933:333198..333698TCONS_00015756-exon-sc0000216-1510915933:333198..333698Clytia hemisphaericaexon
TCONS_00015756-exon-sc0000216-1575043694:333198..333698TCONS_00015756-exon-sc0000216-1575043694:333198..333698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:333198..333698 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.55148	2.60658	3.98946	5.24895	0.163848	0.129475	0.156206	0	0.232414	0.273137	0.369285	0.262816	0.0808052	0	0.213477	0.301284	0	0.203132	0.27894	0.135153	0.234944	0.544169	0.309333	0.519845	0	0	0.499798	0.533398	0.539418	0.744365
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015756 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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