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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015755 ID=TCONS_00015755|Name=TCONS_00015755|organism=Clytia hemisphaerica|type=transcript|length=432bp
gagaaaatTGTTGTTTGTCCAGTTTCGCCCCTCAAAATTCAGGGAATGTC
TTCTGCAGAATCGGAAAAACTGGAAGAAAGTACTGTCTGAAGAGGTTCAA
CTGTCATCCAATATTTCTTCAAACTGTCCAATCATGGTCTTCAAGCTCTG
CTATTCCTATCATCCATCAGTCACAACCGGAAAACGAGAAAAGTCCTCAG
TAAGCTGCTGTACAATATCTCCACGCAACTCTTGTGCAACAATTGGAGGG
CTTTTAGTCCAGCATCTACCTCAGTGAAATGCGCATGATGACGATGGCTT
TAACATAAACAAATCTTGCAATTCTTTCATTGATCACTCCTTCCTATCCA
CTAACTAGACCAGTATCTTCTTGAATCAACGATGATGAACCGTCTAACAC
GTCTTGGGACCTACATAGGTCAGTACACTTGC Run BLAST on NCBI transcript from alignment at sc0000216:331292..336179+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015755 ID=TCONS_00015755|Name=TCONS_00015755|organism=Clytia hemisphaerica|type=transcript|length=4888bp|location=Sequence derived from alignment at sc0000216:331292..336179+ (Clytia hemisphaerica)
gagaaaatTGTTGTTTGTCCAGTTTCGCCCCTCAAAATTCAGGGAATGTC
TTCTGCAGAATCGGAAAAACTGGAAGAAAGTACTGTCTGAAGGTAAGGAA
TTAATTTTACGAAATTGCTTGTGCTGTAAGGAAACAATACGTCTGAAACG
TTTAAATTGGCTCTGAAATCTTTCGTCTTTGGACTATTTGATGCAATCCT
CTGTAAAGTTGATAGGTGTATGAGAAATTTCACTATCGCAATGAGGCTCG
CTCAAAATTGATATAAAGTCTTCTCAATGAAAACAAGTggtacttttatg
gacctacctggttatgcatttaacacatatataattgatatctacgtgag
catgaccgttgaacaatcattcagaacacaaatagtgacgatctattaag
attagttgtttgtttcttataaaacatgctgaatggacctacctgatgat
gaaagttagatagcaatgcgaaaagaaaaatgaaaaaatcagtcagcaca
catagaaatataaggaaaaaatccattgaaaatctgcaaaaacggcgatt
tccagcattttcaaccggaaatttttttttctcaaaaatcgaactcggcc
atgttttgaacattgcgaatacgcatctttctgcaaaaaatcagaaaaaa
ctaaaaatgaaaattcgagaaaatgtcaaaaaatcgattttccgacatat
ttccggcattttcggccggaaaattttttttttgaaaatcgggctcagtc
acattttaggtattgtcatattgcatcagtgtatacaaaatttcataaaa
atataaagtacagcttgagATTCAAGAAATAGTGTtcttccggcgaaaat
cggctgttccggcgatttttagaaagttctggcttcaaaaatcaatttta
ttgaaaattgaaacatgcttgatggtggacattgctattaataatgtttt
tgaatgaaaaaaacaaccaataatatggaaaaagtctaatgaaaatccag
aaaaacggcgatttccggcatatttccagcattttcggccggaaaaaatt
tttctcaagaatcggactaggccatgttctgggcattgttaatacgcatc
tttgagcaaaaaatcagaaaaactaatgatgaaatctcgagaaaatgccg
aaaaaccagtttttccggcataattatttccgccatttttggccgaaaat
ttttttttcgaaaatcgggctccgtcacattttgggcattaccattttgc
atcattgtgcaaaaagttagaaaaaactaatgagccgatctcgagaaaag
ctggtaactaacggacggacggacagacggacggacaaaggttaatttat
aggacctccaggtaggtccaaaagtgAATTTGCTATTACACAGCAACTAG
AGTCTCCATTCCCCCTAATTTATTGATTcattcaattctgttttgatttt
catttttacttttaCCTATAGAGGTTCAACTGTCATCCAATATTTCTTCA
AACTGTCCAATCATGGTCTTCAAGCTCTGCTATTCCTATCATCCATCAGT
CACAACCGGAAAACGAGAAAAGTCCTCAGTAAGCTGGTACGTTTCCATGG
ATGTTTTATAGATCATGATGTCTCTAGCTCTTATAGTGTCCTGTTTCATT
TGATTTAAATGAATCAAACGAATAATCTTTTAGATACATCACCCCCGGCT
CCCATATTACAGGTTGCACTGACCTGTTTAAAATTATATCATCAAAAGAA
CTATAAACTGCTCCTAAAAAAGTTGACAGCCTGCacattttgataaaagt
gaaaCCTCTGAGATGGAACTATCTAATTTGAAAGTTATCATTTTGTCAGT
AATATCTCTTGTCTTATTTTAGCTGTACAATATCTCCACGCAACTCTTGT
GCAACAATTGGAGGGCTTTTAGTCCAGCATCTACCTCAGTGAAATGCGCA
TGATGACGATGGCTTTAACATAAACAAATCTTGCAATTCTTTCATTGATC
ACTCCTTCCTATCCACTAACTAGGTAGGAtaatatatttcctttaaaACT
TCCTCTACTGGATAGGATAAGATCTACAGCAGTGTGATTGGTTCGAAATA
GACTTTTTTTGAGAGAAGACCCGCGACATGTTGTTTGGGGTACCATACCT
TTGAAGCGAACCGCGGCATGTTGTTGGGGGTACCATACCTTTGAAGCGAA
CATAGATTGAGAGTAGTTTGCACcccctttgaaaaaaatatttttagggc
cTTTTTGCAAGGGGGAGGGGTATCAAAATCTGCCTAAAAACCTGGGGGAT
GGGAATGTAACAGGGATAATATAAGGGGGTTGGACATTATGGTCAATTTA
ATCATATAAAAAATGGTCACAGTCTgttcaaaactaaaaatatcatagtg
tcctcccccccccccccttaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTAACCATATggggaaccgcaaaatcttcaaatagctgggggaattca
aaaaagaggggggaaccgaaaaactttgaaatatggtgggggaaataata
gaggggggaatggagaaaagttttgatttttagtggggggaaccaaccca
ggaggacactatgataaTATGTACCACCAAAACACAAattgtaccgggtg
cgccacaaaaaagtttctctctttgaaactaattttctcgaaatctaaaa
attttaaaagaaccattcctttttcattgaaaagaagaaagataaacttg
aATTTTTATGGGTCATTTgctaaattcgattcattagatcaaaagttatg
ctcaattgaatgaaaaagttactttcagaaagtgctcgaaatcgttaaaa
atcgacctatcaaattttcattttaaaattggcaataacaatagccttta
catgattaagagtatttttcagtaactaaacacataaattttgaaactga
agggtcgaaagggttttaaatcttcatcaaaatcactttaatttactttt
accgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
gcctttttcgacgaattttcttcatttcattgaaattcaaccttccttta
tacaacaaaaggtcatttagacagctaattataatttttaatgactgaaa
tgaaaatactgatgtatcgtgtaattatgcttctgtttgatttgataggt
cgacttttaacattttcaggcactttctgaaagtaacttttctattcaat
tgagcataacttttgatctaatagatcaaatttaataaataacccatcaa
aatttaagtctatctttcttctttccaatcaAATAGGaattggttctttt
aaaatttttagatttcgagagaattagtttcaaagagagaaacttttttg
tggcgcacccggtatatcaTGTTGATAGAttatattgttttattttgtga
aATCTTTGGCTTGTTACTCATAGCTTCAGCCTGCTTCAGCCTTCAGCCCC
CCctatttttttttggggggggggctaagaaatattttggcctttaaaga
gcctgggggctaaaattaccaaaatatttgggggacctagattgttgggg
ggcctagatgatctgactgagactctgggggctgttcagctaatttcaaa
agatcCCTTATCTTacttaaatcaaatataaaaagcaaaagatatttaaa
catgaatattaatacaagtaaaatCATATAttctttattgacttctctct
acgggggcgggacctgaagtgttaggggacctagcacaaggcaacTTTTT
TTGGGGGAGCCAAATTGTtgaccttactttgttgggggggagctagaaac
ctggctgaagctatgtgTATAAATCTTGTACTCTTTGATCACATTGATGG
TGCATAGAGCGAGTTTCCTCGAAGcaaattttctgtaaaacagggggggg
ggtataaTTTCATTACTGCGAAAGTCTACAGTTGAAGATTTAGAGACACC
CTGTGGGACAAGAGCTCTGTTGAACTTGTACTTGAATCATCTTTTAAATT
GGACAAAGCTCTTCCTCCACGATTCTTGGTCTTACATTGCTGTTATATGA
TCGTTTTCCTCCAGACCAGTATCTTCTTGAATCAACGATGATGAACCGTC
TAACACGTCTTGGGACCTACATAGGTCAGTACACTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015755-exon-sc0000216-1491911889:331292..331383 | TCONS_00015755-exon-sc0000216-1491911889:331292..331383 | Clytia hemisphaerica | exon |
| TCONS_00015755-exon-sc0000216-1510915933:331292..331383 | TCONS_00015755-exon-sc0000216-1510915933:331292..331383 | Clytia hemisphaerica | exon |
| TCONS_00015755-exon-sc0000216-1575043694:331292..331383 | TCONS_00015755-exon-sc0000216-1575043694:331292..331383 | Clytia hemisphaerica | exon |
| TCONS_00015755-exon-sc0000216-1491911889:332763..332877 | TCONS_00015755-exon-sc0000216-1491911889:332763..332877 | Clytia hemisphaerica | exon |
| TCONS_00015755-exon-sc0000216-1510915933:332763..332877 | TCONS_00015755-exon-sc0000216-1510915933:332763..332877 | Clytia hemisphaerica | exon |
| TCONS_00015755-exon-sc0000216-1575043694:332763..332877 | TCONS_00015755-exon-sc0000216-1575043694:332763..332877 | Clytia hemisphaerica | exon |
| TCONS_00015755-exon-sc0000216-1491911889:333164..333314 | TCONS_00015755-exon-sc0000216-1491911889:333164..333314 | Clytia hemisphaerica | exon |
| TCONS_00015755-exon-sc0000216-1510915933:333164..333314 | TCONS_00015755-exon-sc0000216-1510915933:333164..333314 | Clytia hemisphaerica | exon |
| TCONS_00015755-exon-sc0000216-1575043694:333164..333314 | TCONS_00015755-exon-sc0000216-1575043694:333164..333314 | Clytia hemisphaerica | exon |
| TCONS_00015755-exon-sc0000216-1491911889:336106..336179 | TCONS_00015755-exon-sc0000216-1491911889:336106..336179 | Clytia hemisphaerica | exon |
| TCONS_00015755-exon-sc0000216-1510915933:336106..336179 | TCONS_00015755-exon-sc0000216-1510915933:336106..336179 | Clytia hemisphaerica | exon |
| TCONS_00015755-exon-sc0000216-1575043694:336106..336179 | TCONS_00015755-exon-sc0000216-1575043694:336106..336179 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000216 | supercontig | sc0000216:331292..336179 + |
Blast
The following BLAST results are available for this feature:
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