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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015749 ID=TCONS_00015749|Name=TCONS_00015749|organism=Clytia hemisphaerica|type=transcript|length=755bp
GGTGAAGGACGATGGTTCGGGAGATTCTTGTCTCGGAAATTTGACTTTag
aactgaatttttttaattcattataCCTGCCAAGATGTTAACATGACCAA
ACCAACGAAAGGAAAGACACGTGGTAGAGGATCACAATGTGCTGTCTGGA
TGTTATGGTATGAATCTTTGTTTCATTCATCCGTGATGAGCGAATCAAAT
ATTGGTTTTGGATGTCACGGATCTATACCGTTCTTTCTGACCACGTCTAG
TCAGAGATTACTATTAACATCGTCGAACTCACCACCAGCATACAGGACCG
AGCCTTAACACTTTGACTTCAAAGCAAAACGTACAACCTTGGAATCTCTT
CTATGGTCTTTTGGAAAACATGGTGCGGATTAGCTCTGTATAACAGAAAG
AATGTAGAGCTCAGTTAACCATGGTTGATGTTGATGCAGATGATCGTCAC
TGAAGATTGATGCAGGATACGACAATGACGTCACAAtacttgtgtttttt
ttttacttaaaaggAAACAAATAAAACTCtccgtcataaattttgaatcC
CCTCAGATCCGCCACTGCACTTACTTCTATAGCTTTTTTAGACCactttc
aagaaatatttaatattaGCCCCATTCAGTTTTCAATCTCTATGAATAAA
TTTCTCAAAGGGGTTGAAATTTAGGGTATTTTCTAAAACGGACAAAGTTT
TAGCCAATTGGGTCTGTGAGACAAGGGTGTATTGCCGTGATCATAGTAAG
CCGTG Run BLAST on NCBI transcript from alignment at sc0000216:298723..301207+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015749 ID=TCONS_00015749|Name=TCONS_00015749|organism=Clytia hemisphaerica|type=transcript|length=2485bp|location=Sequence derived from alignment at sc0000216:298723..301207+ (Clytia hemisphaerica)
GGTGAAGGACGATGGTTCGGGAGATTCTTGTCTCGGAAATTTGACTTTag
aactgaatttttttaattcattataCCTGCCAAGATGTTAACATGACCAA
ACCAACGAAAGGAAAGACACGTGGTAGAGGATCACAATGTGCTGTCTGGA
TGTTATGGTATGAATCTTTGGTATGTTTCGATCTAGTGGTTTTGCAGTTT
TGAGAAAGTTTAAAAGgcaatttgaatgtttttaagCTATAGATTTTCCT
CTCAGCCTCTATTTAAGAGAtcgttttttctcaaaacaagGCAATCTTCA
ACTTTAATCTCAGTGTTTTGATTTTCGGTCTTGAATCTTGTTGTTTACTT
GAGAAATCATGTCTTTCTCATACATTAAGAAAAATTGTCTCGTGAAACAC
TTATTTTTGACGTTTCTTTAGGAAATTTGAATTGCTTTGTTTGCGGCAGT
TTTCGAAAGAGTACTCAATTAATTCTCTGTCAGGTAGTAAAAAACGAAAT
TAGCTTTTAATGGCAAGAGAGAGGGTGCGAAATGATATTTACTTTGGTGC
TCACATACATCAATTGAGTATTTTGTGAAGCTAGATTTTTTTGTACCGTT
AATGTTGGTTTGAGAATGTGCAATTTAAGGATTATACGTTTCTGTGTGTT
TTGAggttaatattttttttgttgaccTTGAAAATACAAACCTAATTGTT
CCTGATTAACATTACACACAAATGAAACCCATATTATAGGGATTAAAGTA
ATTAACGATGAAAATAGTTTTGTCACTTGGAAAACAATatcttttgtttc
aaattttattgcaacactctttgaaagaaaatttattgcTGAACAGTGAC
ATCCAGTAACAGTTGTATTGCATTTCTGTTTTTATTTCACATTCTCAAAA
AAAGCAACAGTTAACTGAAAAGATAGTATCTTGGAAATAAGAATGTCTGG
TCGGGTTTTAGAATCTATAGTTTTGGTTCTGATTTTTCATGAATTCTTGT
TTGTAGGTTTTCTTGAAATGTCAATTTAAGGTTTGTACATATGGTGTAAA
CAATCCAGCATCATTATTTGTCAAATTGTTCGAGATTTGTAAGGATTATT
GTGCGTTTAACTTGTTGCGTTAACGTTTCATGTGTgtaatgaattttcaa
attcattatTATCTACTatgttctttataagaatacccaTAATAAGTTTT
Tgaggccttcggatgttcttaacgtttagattttcaaccctgaaatgttc
tcaacatgGTCTTATTTTCACCGATGTGGGAGTATTTTTGTACATGTTCC
CAAGATATATTTTAGATTCCGCAaggccttaaattgttcttaatactCTG
TATGGCTTTTGAAAGTCGAAAACTTTTTCGAAATGGGGTGCTTAGACAGT
TTATCTTATACCTTTTCTTATAGATCTTTAATCTTTGTTTTCAGTTTCAT
TCATCCGTGATGAGCGAATCAAATATTGGTTTTGGATGTCACGGATCTAT
ACCGTTCTTTCTGACCACGTCTAGTCAGAGATTACTATTAACATCGTCGA
ACTCACCACCAGCATACAGGACCGAGCCTTAACACTTTGGTATTGACTGC
AATACCCTTGCCTCACCACGGATTGCGCTATAGAGAAAATGTCATATAGA
ACTTTGAAAATCGCTGCAGATTACAATACGATATAAGTTTGTATACCCCC
TGgatttattcattttttggGACCCATTAATAATATTCTGATGGATGTTT
GGTCAATTCGCTGCCAAAATAGTGTACTGTTACTAAGTTAATATATAGAT
ATTTATCATGTTAATCGAGACGGCAGTTCTCCTGCTTTATGCTTTTTACG
TAGATTTTGTTATTAAGTCGTCATTGTAAACTTCGTcagctatatcattg
ttttaaagttttaaaggttGCTCAGCTTGATCGTCCATgattattatttt
aaaaacagattttttctctcgcttTTTTCAGGAAATCTGTTCAAACGACG
GCGAAATTTAAAGATCCTGGAAGCacttttttcgtgattttttagACTTC
AAAGCAAAACGTACAACCTTGGAATCTCTTCTATGGTCTTTTGGAAAACA
TGGTGCGGATTAGCTCTGTATAACAGAAAGAATGTAGAGCTCAGTTAACC
ATGGTTGATGTTGATGCAGATGATCGTCACTGAAGATTGATGCAGGATAC
GACAATGACGTCACAAtacttgtgttttttttttacttaaaaggAAACAA
ATAAAACTCtccgtcataaattttgaatcCCCTCAGATCCGCCACTGCAC
TTACTTCTATAGCTTTTTTAGACCactttcaagaaatatttaatattaGC
CCCATTCAGTTTTCAATCTCTATGAATAAATTTCTCAAAGGGGTTGAAAT
TTAGGGTATTTTCTAAAACGGACAAAGTTTTAGCCAATTGGGTCTGTGAG
ACAAGGGTGTATTGCCGTGATCATAGTAAGCCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015749-exon-sc0000216-1491911889:298723..298892 | TCONS_00015749-exon-sc0000216-1491911889:298723..298892 | Clytia hemisphaerica | exon |
| TCONS_00015749-exon-sc0000216-1510915933:298723..298892 | TCONS_00015749-exon-sc0000216-1510915933:298723..298892 | Clytia hemisphaerica | exon |
| TCONS_00015749-exon-sc0000216-1575043694:298723..298892 | TCONS_00015749-exon-sc0000216-1575043694:298723..298892 | Clytia hemisphaerica | exon |
| TCONS_00015749-exon-sc0000216-1491911889:300167..300311 | TCONS_00015749-exon-sc0000216-1491911889:300167..300311 | Clytia hemisphaerica | exon |
| TCONS_00015749-exon-sc0000216-1510915933:300167..300311 | TCONS_00015749-exon-sc0000216-1510915933:300167..300311 | Clytia hemisphaerica | exon |
| TCONS_00015749-exon-sc0000216-1575043694:300167..300311 | TCONS_00015749-exon-sc0000216-1575043694:300167..300311 | Clytia hemisphaerica | exon |
| TCONS_00015749-exon-sc0000216-1491911889:300768..301207 | TCONS_00015749-exon-sc0000216-1491911889:300768..301207 | Clytia hemisphaerica | exon |
| TCONS_00015749-exon-sc0000216-1510915933:300768..301207 | TCONS_00015749-exon-sc0000216-1510915933:300768..301207 | Clytia hemisphaerica | exon |
| TCONS_00015749-exon-sc0000216-1575043694:300768..301207 | TCONS_00015749-exon-sc0000216-1575043694:300768..301207 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000216 | supercontig | sc0000216:298723..301207 + |
Blast
The following BLAST results are available for this feature:
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