TCONS_00015724 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015724
Unique NameTCONS_00015724
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015724 ID=TCONS_00015724|Name=TCONS_00015724|organism=Clytia hemisphaerica|type=transcript|length=852bp
CATTTTCAGATCGCGAATCACTTCGATTTATATAATTCttaaaaaacttg
gaaaaccgTCTGGTTAAAACTAACTGTAGTCAAACCAAACTTTCTATAAG
ATTTAAGGATTTTTCGATGTACTGTTCATAATGGTAAATGGTgtacaaat
tcataaatttcataagATTTGACCGCGGTCGCCTCAGTGTgttacactgt
gacctagtatttTACGATTTAACCCGACTGACACTAGTTCTGGTAGTTCT
TTGGGCAGGCTTCCAGGTGTGCACGGAATTCTAAATGACcgttattcaaa
atttattaaGCAGTTTTAAAATGGATGCTGGTACAAACACGATATAACTT
ACGAGCTTCGCATGGAAATGGTTTTATTCGTGGTCAGACTTCTCTTACGT
TTTGTTGTTTCAAAATCCGGAAATACTCTGCCCTGTCATATGGCCAGGTT
AAACAACATGACAATATGGCGGATGCCttgaagatatttttttgaCCTTG
tggtgtataattttttactaTAAAGCCTTGAATTTATTTCACTACAATAA
TGGATCCTCCTAGAGACTTTTCAGAAAACAGTTTCAGTAATTCACAATCT
GAAGAAGGTGGAGAGTTTTCTTTTGTCTCAACAAACACTCAAAACGATAC
AGAAATTActggaacattggaaggaggaGGAACAAATTTTGGAGAAGAAA
ATAATCTCCGGCATCGAATTCTGGATAATAAATACACAAACTCTCTTCTT
GGAAATAAAGGTATCAATTGGCTTCTTGAagttgaagatgaagatgacgA
TACCTTTCAAAAGCCCTTGTTGTAAGAgtctttgttgtctttttatgATA
TT
Run BLAST on NCBI

transcript from alignment at sc0000215:168739..169590

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015724 ID=TCONS_00015724|Name=TCONS_00015724|organism=Clytia hemisphaerica|type=transcript|length=852bp|location=Sequence derived from alignment at sc0000215:168739..169590 (Clytia hemisphaerica)
AATATcataaaaagacaacaaagacTCTTACAACAAGGGCTTTTGAAAGG
TATcgtcatcttcatcttcaactTCAAGAAGCCAATTGATACCTTTATTT
CCAAGAAGAGAGTTTGTGTATTTATTATCCAGAATTCGATGCCGGAGATT
ATTTTCTTCTCCAAAATTTGTTCCtcctccttccaatgttccagTAATTT
CTGTATCGTTTTGAGTGTTTGTTGAGACAAAAGAAAACTCTCCACCTTCT
TCAGATTGTGAATTACTGAAACTGTTTTCTGAAAAGTCTCTAGGAGGATC
CATTATTGTAGTGAAATAAATTCAAGGCTTTAtagtaaaaaattatacac
caCAAGGtcaaaaaaatatcttcaaGGCATCCGCCATATTGTCATGTTGT
TTAACCTGGCCATATGACAGGGCAGAGTATTTCCGGATTTTGAAACAACA
AAACGTAAGAGAAGTCTGACCACGAATAAAACCATTTCCATGCGAAGCTC
GTAAGTTATATCGTGTTTGTACCAGCATCCATTTTAAAACTGCttaataa
attttgaataacgGTCATTTAGAATTCCGTGCACACCTGGAAGCCTGCCC
AAAGAACTACCAGAACTAGTGTCAGTCGGGTTAAATCGTAaaatactagg
tcacagtgtaacACACTGAGGCGACCGCGGTCAAATcttatgaaatttat
gaatttgtacACCATTTACCATTATGAACAGTACATCGAAAAATCCTTAA
ATCTTATAGAAAGTTTGGTTTGACTACAGTTAGTTTTAACCAGAcggttt
tccaagttttttaaGAATTATATAAATCGAAGTGATTCGCGATCTGAAAA
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008778XLOC_008778Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015724-exon-sc0000215-1491911889:168739..169590TCONS_00015724-exon-sc0000215-1491911889:168739..169590Clytia hemisphaericaexon
TCONS_00015724-exon-sc0000215-1510915933:168739..169590TCONS_00015724-exon-sc0000215-1510915933:168739..169590Clytia hemisphaericaexon
TCONS_00015724-exon-sc0000215-1575043694:168739..169590TCONS_00015724-exon-sc0000215-1575043694:168739..169590Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:168739..169590 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.2151	25.4313	15.9424	15.4194	17.6877	12.5082	20.9872	23.1402	19.8041	18.2934	18.2993	16.6757	13.4242	13.9062	10.5168	12.2062	14.3761	17.5748	13.1787	15.5463	24.0194	21.6994	23.6114	27.1816	10.3209	15.5675	17.5403	15.7696	20.4867	18.085
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015724 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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