TCONS_00015716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015716
Unique NameTCONS_00015716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015716 ID=TCONS_00015716|Name=TCONS_00015716|organism=Clytia hemisphaerica|type=transcript|length=298bp
GTTCTGTCTTTACTCAACCATTGGAGAGATACGACCTGAATGAAAATGAC
AACAACACTTCTCAACTATGTGATATAGACCTCACAGAAGCTGATTTTAT
CAACAAAATCAACACCCTATCTTCAAACTCTGCCCCTGTACCTGATGGTT
TCCCTGCCATCCTGCTCAAAAAAGCCAGACAACAACTTGCAACTCCTCGT
TGTCTTATCTGGAGAAATATTCTAGACAAAAGTCAAACTCCCCATCTACT
GAAATCAAGCTACATCACACCAATCTTCAAAAAAGGCAATCAAGGTTT
Run BLAST on NCBI

transcript from alignment at sc0000215:120905..121202

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015716 ID=TCONS_00015716|Name=TCONS_00015716|organism=Clytia hemisphaerica|type=transcript|length=298bp|location=Sequence derived from alignment at sc0000215:120905..121202 (Clytia hemisphaerica)
AAACCTTGATTGCCTTTTTTGAAGATTGGTGTGATGTAGCTTGATTTCAG
TAGATGGGGAGTTTGACTTTTGTCTAGAATATTTCTCCAGATAAGACAAC
GAGGAGTTGCAAGTTGTTGTCTGGCTTTTTTGAGCAGGATGGCAGGGAAA
CCATCAGGTACAGGGGCAGAGTTTGAAGATAGGGTGTTGATTTTGTTGAT
AAAATCAGCTTCTGTGAGGTCTATATCACATAGTTGAGAAGTGTTGTTGT
CATTTTCATTCAGGTCGTATCTCTCCAATGGTTGAGTAAAGACAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008770XLOC_008770Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015716-exon-sc0000215-1491911889:120905..121202TCONS_00015716-exon-sc0000215-1491911889:120905..121202Clytia hemisphaericaexon
TCONS_00015716-exon-sc0000215-1510915933:120905..121202TCONS_00015716-exon-sc0000215-1510915933:120905..121202Clytia hemisphaericaexon
TCONS_00015716-exon-sc0000215-1575043694:120905..121202TCONS_00015716-exon-sc0000215-1575043694:120905..121202Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:120905..121202 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.52763	0.656055	3.62884	2.33429	0	0	0	0	1.12432	0.830727	3.62294	0.573777	1.3927	1.37423	1.064	0.265705	0	0.612375	0.846029	1.23277	0.519794	2.32144	0	0	4.85874e-08	1.00054	2.65403	0	0.739007	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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