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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015715 ID=TCONS_00015715|Name=TCONS_00015715|organism=Clytia hemisphaerica|type=transcript|length=1672bp
AAAAGATTCCTTCAAGAAACGACTCGATAAATATCTGTGCTCTATACCCG
ACGAACCTCACACTACGTCGCGACAAACAAGATTGGCTGAATCAAATGCT
CTTGTCCATCAAATAATACGTGTTGGGCTCAACGAGCTGGACAGATgaat
atcatcaaatcaaactgAAGTATACTGAAGTAAGTATACTTCAAGCAAAG
CATTAGATTTGGAATCATTATGTCATTTCAATTTTCCAGAAAGAATGATT
GATAGTCTATGGATAAATCACATCTGTTCCGAAGTTGGTTGTAAAAAACG
ATTTATTGTAATCGATGGAAATGAAAAGTTGTACAGATTCATTTGTTCAG
CCGAAAAGAAGAAAGTGACGGGTAATAAAGGAGAAGTTAATGGATATGAT
ATGTGTATACACAATCCGATTCGTGGTAATCAATTTAAGAAATCCGAAAG
GCTTTGTGAAGAGCACTTGAATGGAGCGTCTGGGTCTACGGTTGAACAGT
TAGACATTGGCCCGGTAACACGATCTATGACAAAATCACTGCCAACAGTT
ATAACCATGGGGGAAGGATGTAAACAAGAGGAAAACATTGATAAATTCTA
TGCACGAACTGCAGgacaattttatatttttcgtaCTTGTGGCTTCAAAT
TGTGTAATTATGAAATGTACACTGCAGAATCGCTATCAAGCATATTCACC
TATCTTTTAAATTTGTTCGGTTCATGTCctaagaaagaaaattagaaagg
AATTGTATATGACAGAGCATGTGAACCTGTGTGAACTGCACCCTTTTATA
AATCGTTTGAGTGACGTAGGTAATAAATCAGCAGATAATCATAGAGGATT
AAGTTACATAGTAGACTCTTTCCATGTGGAAAAGCATACACAACCGAAGT
GTATTTTGGACGACCCTCGTTGCGCGTATCAACCAGATTTAGAAAAGTTT
TCACATGTTTAAAAATGAACACTGAAGTTGCTGAACAATCTTTCAGTAAA
CTTAATCCGCTTAAGTTTGCTACGAGAAAAATGAGTTATGGAAAACGGTT
AATGTTTTTTAAACTGATCGACCACGCATTTAATAAAAGACTAACAAAAC
GATTCGATGTTTGAATACAATTTTTATACATGCAGCACGAATGGTTATTT
TTACGACCATGGTATAAGTTACATTATATATCACACTTCAAAAATACAAG
CAAACGCGGAGAATGCGAAGCTCCACAGAATATCCGCGATCTCTGGTGGC
GGCGGCGAAGTTTGAGATCACACttaaaaaacacaagaaaacgcGGAGAA
TGCGAAGCTCCACAGAATATCCGGAATCTCCGGCGGCTGCAGCGAAGTTT
GAGATCACACTTAAAAACACAAGCAAACGCGGAGAATGCGAAGCTCCGCA
GAATATCCGCGATCTCCGGCGGCGGCGAAGTTTGAGATCACACttaaaaa
acacaagaaaacgcGGAGAATGCGAAGCTCCGCAGAATATCCACGATCTC
CGGCGACGGCGGCGAAGTTTGAGATCACACTTCAAAAACGCGGAGAATGC
GAAGCTCCGCAGAATATCCGCGATCTACGGCAGCGGCGGCAAAGTTTGAG
ATCACACttcaaaaacacaagaaaacgcGGAGAATGCGAAGCTCCGCAGA
ATATCCGCGATCTCCGGCGGCG Run BLAST on NCBI protein sequence of TCONS_00015715-protein >TCONS_00015715-protein ID=TCONS_00015715-protein|Name=TCONS_00015715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MIDSLWINHICSEVGCKKRFIVIDGNEKLYRFICSAEKKKVTGNKGEVNG
YDMCIHNPIRGNQFKKSERLCEEHLNGASGSTVEQLDIGPVTRSMTKSLP
TVITMGEGCKQEENIDKFYARTAGQFYIFRTCGFKLCNYEMYTAESLSSI
FTYLLNLFGSCPKKEN Run BLAST on NCBI transcript from alignment at sc0000215:107131..108802 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015715 ID=TCONS_00015715|Name=TCONS_00015715|organism=Clytia hemisphaerica|type=transcript|length=1672bp|location=Sequence derived from alignment at sc0000215:107131..108802 (Clytia hemisphaerica)
CGCCGCCGGAGATCGCGGATATTCTGCGGAGCTTCGCATTCTCCgcgttt
tcttgtgtttttgaaGTGTGATCTCAAACTTTGCCGCCGCTGCCGTAGAT
CGCGGATATTCTGCGGAGCTTCGCATTCTCCGCGTTTTTGAAGTGTGATC
TCAAACTTCGCCGCCGTCGCCGGAGATCGTGGATATTCTGCGGAGCTTCG
CATTCTCCgcgttttcttgtgttttttaaGTGTGATCTCAAACTTCGCCG
CCGCCGGAGATCGCGGATATTCTGCGGAGCTTCGCATTCTCCGCGTTTGC
TTGTGTTTTTAAGTGTGATCTCAAACTTCGCTGCAGCCGCCGGAGATTCC
GGATATTCTGTGGAGCTTCGCATTCTCCgcgttttcttgtgttttttaaG
TGTGATCTCAAACTTCGCCGCCGCCACCAGAGATCGCGGATATTCTGTGG
AGCTTCGCATTCTCCGCGTTTGCTTGTATTTTTGAAGTGTGATATATAAT
GTAACTTATACCATGGTCGTAAAAATAACCATTCGTGCTGCATGTATAAA
AATTGTATTCAAACATCGAATCGTTTTGTTAGTCTTTTATTAAATGCGTG
GTCGATCAGTTTAAAAAACATTAACCGTTTTCCATAACTCATTTTTCTCG
TAGCAAACTTAAGCGGATTAAGTTTACTGAAAGATTGTTCAGCAACTTCA
GTGTTCATTTTTAAACATGTGAAAACTTTTCTAAATCTGGTTGATACGCG
CAACGAGGGTCGTCCAAAATACACTTCGGTTGTGTATGCTTTTCCACATG
GAAAGAGTCTACTATGTAACTTAATCCTCTATGATTATCTGCTGATTTAT
TACCTACGTCACTCAAACGATTTATAAAAGGGTGCAGTTCACACAGGTTC
ACATGCTCTGTCATATACAATTcctttctaattttctttcttagGACATG
AACCGAACAAATTTAAAAGATAGGTGAATATGCTTGATAGCGATTCTGCA
GTGTACATTTCATAATTACACAATTTGAAGCCACAAGtacgaaaaatata
aaattgtcCTGCAGTTCGTGCATAGAATTTATCAATGTTTTCCTCTTGTT
TACATCCTTCCCCCATGGTTATAACTGTTGGCAGTGATTTTGTCATAGAT
CGTGTTACCGGGCCAATGTCTAACTGTTCAACCGTAGACCCAGACGCTCC
ATTCAAGTGCTCTTCACAAAGCCTTTCGGATTTCTTAAATTGATTACCAC
GAATCGGATTGTGTATACACATATCATATCCATTAACTTCTCCTTTATTA
CCCGTCACTTTCTTCTTTTCGGCTGAACAAATGAATCTGTACAACTTTTC
ATTTCCATCGATTACAATAAATCGTTTTTTACAACCAACTTCGGAACAGA
TGTGATTTATCCATAGACTATCAATCATTCTTTCTGGAAAATTGAAATGA
CATAATGATTCCAAATCTAATGCTTTGCTTGAAGTATACTTACTTCAGTA
TACTTcagtttgatttgatgatattcATCTGTCCAGCTCGTTGAGCCCAA
CACGTATTATTTGATGGACAAGAGCATTTGATTCAGCCAATCTTGTTTGT
CGCGACGTAGTGTGAGGTTCGTCGGGTATAGAGCACAGATATTTATCGAG
TCGTTTCTTGAAGGAATCTTTT Coding sequence (CDS) from alignment at sc0000215:107131..108802 >TCONS_00015715 ID=TCONS_00015715|Name=TCONS_00015715|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0000215:107131..108802 (Clytia hemisphaerica)
ctaattttctttcttagGACATGAACCGAACAAATTTAAAAGATAGGTGA
ATATGCTTGATAGCGATTCTGCAGTGTACATTTCATAATTACACAATTTG
AAGCCACAAGtacgaaaaatataaaattgtcCTGCAGTTCGTGCATAGAA
TTTATCAATGTTTTCCTCTTGTTTACATCCTTCCCCCATGGTTATAACTG
TTGGCAGTGATTTTGTCATAGATCGTGTTACCGGGCCAATGTCTAACTGT
TCAACCGTAGACCCAGACGCTCCATTCAAGTGCTCTTCACAAAGCCTTTC
GGATTTCTTAAATTGATTACCACGAATCGGATTGTGTATACACATATCAT
ATCCATTAACTTCTCCTTTATTACCCGTCACTTTCTTCTTTTCGGCTGAA
CAAATGAATCTGTACAACTTTTCATTTCCATCGATTACAATAAATCGTTT
TTTACAACCAACTTCGGAACAGATGTGATTTATCCATAGACTATCAATCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015715-exon-sc0000215-1491911889:107131..108802 | TCONS_00015715-exon-sc0000215-1491911889:107131..108802 | Clytia hemisphaerica | exon |
| TCONS_00015715-exon-sc0000215-1510915933:107131..108802 | TCONS_00015715-exon-sc0000215-1510915933:107131..108802 | Clytia hemisphaerica | exon |
| TCONS_00015715-exon-sc0000215-1575043694:107131..108802 | TCONS_00015715-exon-sc0000215-1575043694:107131..108802 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000215 | supercontig | sc0000215:107131..108802 . |
Blast
The following BLAST results are available for this feature:
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