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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015709 ID=TCONS_00015709|Name=TCONS_00015709|organism=Clytia hemisphaerica|type=transcript|length=1338bp
ATGCACGATAATTTGGTTGTtcgattttgaaattatttacaTAAAAATGA
AGTAAAATATAGATCTAAATCTTTCCtaataataaattttgaatgaaatg
cTTGGTTATTTTTTATATACAATTTAGAGTCATAAAGTCGGTTGGTCAGT
AACGAGTTTCTTGGTTTCTTTACTCAATTTTCCTGTTATCATTTGGCATA
TGAGGAAAAATCAAGTCCTGTCTCTTCCATTTTCGAACAAGCGAATCGAG
TGATCTTTTGtgtaaaaatggattttcttcattttcacttttcttgTGTA
GAAACGGATTGGTTTGTTTGCTACTTTGCTCATCTTCTCTTTCTTTGAGC
AAGCGTTCGAGTGTTCTCTCAAGGGAATATAATCTCTTGTGTGGAAATGG
AACTAATTCCTCTTCCTCTTCTTGGCGTTTCCCATATGTAGAGGTTGATT
TCTTATGTGGAAAAGGTGTTTCCCTAGCTTGGGAATGGATTGATTTCCTG
TGAAGGAATGGAGATTCGTCAGCTAATTGTTGAAGCAATTCGATCATTCT
CTTATGGGGAAAAGGTGTTTCCCCTATTGTCGAATCTGCTGATTTCTTAT
GGGGAAATGGTGTTTCTTCTTCTTTGGAATCTTCTGATTTCTTCTGCAAA
GATGGAAGCTCGTCTTCTATCTCCTGGAGTAATGCAGCTAATCTTTTGTG
AGGAAATGGCGTTTCGTCTATCTCCTCCTGCTTTTCCGCCGTTTTCTTAT
GGAGAAAAGGGCTCTCATCTTCTCGTTTCCCATGGTGAAAAGCTTTTTCC
AACTTGGGCTTTTCTACCATTACCAAGTATCCATTCCCAGCTGAACTTTC
ACCATCTTGAAGTGGAGGGACCTGTCTTTTGTTTGATTTAATTGATTTCT
TATGAGGAAATAGGTATTCCCCTAGTGATTCTTGGTTTTCCTTAGCTTGT
ATATCCTCGTCTTGAAGAGGAGGAACTTGTCTTTTGAGTGCCGAGATGAG
TTCAAACAGTCTTTTGCGTGAAATAGGTGTTTCGTCATCTTGGATATTGA
TAGATTTTTTATGAGGGAAAGGATATTCCTCCTCGACATTTCGTTTATTT
TTCTCATCTAGATGCCTCTTTGATCTTTTTCCACCGCCATACCCATGGGG
AAATGATCGAGCACCAAAGAAAGCTAGTGAAGCAGCTCTTTTGACGGCGT
TTTTACCCTGGTTGATTCGTGATGGCATCCTCCAGTCTTTGGTTTCCTTA
CACGTGGAAAGCTTGCTGACTAGACATATTGCCAGCACAATCAGAAATGA
CTTCATTTTCTctttcttataactttattaTCTGTAAA Run BLAST on NCBI protein sequence of TCONS_00015709-protein >TCONS_00015709-protein ID=TCONS_00015709-protein|Name=TCONS_00015709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MKSFLIVLAICLVSKLSTCKETKDWRMPSRINQGKNAVKRAASLAFFGAR
SFPHGYGGGKRSKRHLDEKNKRNVEEEYPFPHKKSINIQDDETPISRKRL
FELISALKRQVPPLQDEDIQAKENQESLGEYLFPHKKSIKSNKRQVPPLQ
DGESSAGNGYLVMVEKPKLEKAFHHGKREDESPFLHKKTAEKQEEIDETP
FPHKRLAALLQEIEDELPSLQKKSEDSKEEETPFPHKKSADSTIGETPFP
HKRMIELLQQLADESPFLHRKSIHSQARETPFPHKKSTSTYGKRQEEEEE
LVPFPHKRLYSLERTLERLLKEREDEQSSKQTNPFLHKKSENEENPFLHK
RSLDSLVRKWKRQDLIFPHMPNDNRKIE Run BLAST on NCBI transcript from alignment at sc0000215:42293..43630 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015709 ID=TCONS_00015709|Name=TCONS_00015709|organism=Clytia hemisphaerica|type=transcript|length=1338bp|location=Sequence derived from alignment at sc0000215:42293..43630 (Clytia hemisphaerica)
TTTACAGAtaataaagttataagaaagAGAAAATGAAGTCATTTCTGATT
GTGCTGGCAATATGTCTAGTCAGCAAGCTTTCCACGTGTAAGGAAACCAA
AGACTGGAGGATGCCATCACGAATCAACCAGGGTAAAAACGCCGTCAAAA
GAGCTGCTTCACTAGCTTTCTTTGGTGCTCGATCATTTCCCCATGGGTAT
GGCGGTGGAAAAAGATCAAAGAGGCATCTAGATGAGAAAAATAAACGAAA
TGTCGAGGAGGAATATCCTTTCCCTCATAAAAAATCTATCAATATCCAAG
ATGACGAAACACCTATTTCACGCAAAAGACTGTTTGAACTCATCTCGGCA
CTCAAAAGACAAGTTCCTCCTCTTCAAGACGAGGATATACAAGCTAAGGA
AAACCAAGAATCACTAGGGGAATACCTATTTCCTCATAAGAAATCAATTA
AATCAAACAAAAGACAGGTCCCTCCACTTCAAGATGGTGAAAGTTCAGCT
GGGAATGGATACTTGGTAATGGTAGAAAAGCCCAAGTTGGAAAAAGCTTT
TCACCATGGGAAACGAGAAGATGAGAGCCCTTTTCTCCATAAGAAAACGG
CGGAAAAGCAGGAGGAGATAGACGAAACGCCATTTCCTCACAAAAGATTA
GCTGCATTACTCCAGGAGATAGAAGACGAGCTTCCATCTTTGCAGAAGAA
ATCAGAAGATTCCAAAGAAGAAGAAACACCATTTCCCCATAAGAAATCAG
CAGATTCGACAATAGGGGAAACACCTTTTCCCCATAAGAGAATGATCGAA
TTGCTTCAACAATTAGCTGACGAATCTCCATTCCTTCACAGGAAATCAAT
CCATTCCCAAGCTAGGGAAACACCTTTTCCACATAAGAAATCAACCTCTA
CATATGGGAAACGCCAAGAAGAGGAAGAGGAATTAGTTCCATTTCCACAC
AAGAGATTATATTCCCTTGAGAGAACACTCGAACGCTTGCTCAAAGAAAG
AGAAGATGAGCAAAGTAGCAAACAAACCAATCCGTTTCTACAcaagaaaa
gtgaaaatgaagaaaatccatttttacaCAAAAGATCACTCGATTCGCTT
GTTCGAAAATGGAAGAGACAGGACTTGATTTTTCCTCATATGCCAAATGA
TAACAGGAAAATTGAGTAAAGAAACCAAGAAACTCGTTACTGACCAACCG
ACTTTATGACTCTAAATTGTATATAAAAAATAACCAAgcatttcattcaa
aatttattattaGGAAAGATTTAGATCTATATTTTACTTCATTTTTAtgt
aaataatttcaaaatcgaACAACCAAATTATCGTGCAT Coding sequence (CDS) from alignment at sc0000215:42293..43630 >TCONS_00015709 ID=TCONS_00015709|Name=TCONS_00015709|organism=Clytia hemisphaerica|type=CDS|length=1137bp|location=Sequence derived from alignment at sc0000215:42293..43630 (Clytia hemisphaerica)
ATGAAGTCATTTCTGATTGTGCTGGCAATATGTCTAGTCAGCAAGCTTTC
CACGTGTAAGGAAACCAAAGACTGGAGGATGCCATCACGAATCAACCAGG
GTAAAAACGCCGTCAAAAGAGCTGCTTCACTAGCTTTCTTTGGTGCTCGA
TCATTTCCCCATGGGTATGGCGGTGGAAAAAGATCAAAGAGGCATCTAGA
TGAGAAAAATAAACGAAATGTCGAGGAGGAATATCCTTTCCCTCATAAAA
AATCTATCAATATCCAAGATGACGAAACACCTATTTCACGCAAAAGACTG
TTTGAACTCATCTCGGCACTCAAAAGACAAGTTCCTCCTCTTCAAGACGA
GGATATACAAGCTAAGGAAAACCAAGAATCACTAGGGGAATACCTATTTC
CTCATAAGAAATCAATTAAATCAAACAAAAGACAGGTCCCTCCACTTCAA
GATGGTGAAAGTTCAGCTGGGAATGGATACTTGGTAATGGTAGAAAAGCC
CAAGTTGGAAAAAGCTTTTCACCATGGGAAACGAGAAGATGAGAGCCCTT
TTCTCCATAAGAAAACGGCGGAAAAGCAGGAGGAGATAGACGAAACGCCA
TTTCCTCACAAAAGATTAGCTGCATTACTCCAGGAGATAGAAGACGAGCT
TCCATCTTTGCAGAAGAAATCAGAAGATTCCAAAGAAGAAGAAACACCAT
TTCCCCATAAGAAATCAGCAGATTCGACAATAGGGGAAACACCTTTTCCC
CATAAGAGAATGATCGAATTGCTTCAACAATTAGCTGACGAATCTCCATT
CCTTCACAGGAAATCAATCCATTCCCAAGCTAGGGAAACACCTTTTCCAC
ATAAGAAATCAACCTCTACATATGGGAAACGCCAAGAAGAGGAAGAGGAA
TTAGTTCCATTTCCACACAAGAGATTATATTCCCTTGAGAGAACACTCGA
ACGCTTGCTCAAAGAAAGAGAAGATGAGCAAAGTAGCAAACAAACCAATC
CGTTTCTACAcaagaaaagtgaaaatgaagaaaatccatttttacaCAAA
AGATCACTCGATTCGCTTGTTCGAAAATGGAAGAGACAGGACTTGATTTT
TCCTCATATGCCAAATGATAACAGGAAAATTGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015709-exon-sc0000215-1491911889:42293..43630 | TCONS_00015709-exon-sc0000215-1491911889:42293..43630 | Clytia hemisphaerica | exon |
| TCONS_00015709-exon-sc0000215-1510915933:42293..43630 | TCONS_00015709-exon-sc0000215-1510915933:42293..43630 | Clytia hemisphaerica | exon |
| TCONS_00015709-exon-sc0000215-1575043694:42293..43630 | TCONS_00015709-exon-sc0000215-1575043694:42293..43630 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000215 | supercontig | sc0000215:42293..43630 . |
Blast
The following BLAST results are available for this feature:
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