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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015703 ID=TCONS_00015703|Name=TCONS_00015703|organism=Clytia hemisphaerica|type=transcript|length=2137bp
AGCAAGGAGTGTACATGACATTTTAGAAAATGCTGACGAAGCATATTTGA
TGGGGAAAGTGTACGATGATAGAGACCTATCAATTGATTACACAGAACTT
GAAAATGaacagaaagaagaagaaaagaataaaGTGGTCAAAGAATTGAT
CTTGTCCTTGCAAGAAATGGAATTCCCACCAACTCCAATAGGAGAACGAA
AGCTTTCACCAGCACCTGGCAAAAGTCATTTTTCAACCAAGCAATTACCG
AAGAGGATGGCTAGTCAAGATTTAGATGACTCACATCGTAGTTACGAGAC
CATCGAACAGTTACGAGCACGTTTGAAGCAGAATTATTTAGAGGCGAAAC
GGCAAcgcgaaaaatatttgaatttgagTCCAACTCGTAAGAAGGACAGT
GCTAAGAATTTAAATGGATACCGTTCAAAAACCCAACAACAACCTGTTTT
CAAGAACTATAAACAAAAATCTGAAGTCCAAGAACGAACAAACGGAGTTG
TTAAGTTCGATAATCAACTATCAGTCAACGGCGTTCGAACAAATAGCCCG
AACGATCAATCTACGTCTGAATTATCACAAGCTCTTTCTAACAAGAAAAC
AACAAGCGATCGTGAAATAATACCGACCGTCTATTTAGGTGATCAATCCA
ATCTGAAATCAAGAGACTCTACTAGTAATTTGAACGgattttcaaaacaa
gaaagttTTGACCAACACCGTTCACCACCACCGAAGACCAGTGAAAAACC
ACAAGGCTATAAAACGAACAATGCCTCAAAATCAACGGTAAAATCTCCAA
AACAGATGCATCAAATGTCGAGAGATAATTCAATCGATCTAGATCGACCT
TCGAATCAAAATCcaggatcgacgaatctaaccCGCAAGAACAGTCTTAA
GAACTTGGTCAAGAGGAGCGACAGTCGGAGTAGCATAAAGAAAGACATTA
AGCGTTCACCTGAGATTAATCATAATGATATCGATAATGTGCTGACTAAT
CATAATATAAATGATGACATcagcaaaaagaaaatacaCCATGAAGAAGT
GAAAGGAGAAGAAGAGggtAACGAATTCGATGTTATGGACATGTTAGCGA
ATTGGTAGATGGCATGGTTAAACTTATACAAATATGTGTCATGTATCTCG
CGTATTTAACATGGAAGTAGCCACCGAGCCACCAACAGAACTAATGAACA
ATAGGGTATATGTTCTGGACGTGCTTGAAATCAATTAGCTACAGACAATC
GATGCAACAATAGAGACAATTTGTGAATTGTGATCCTTTACTTGTTTGAA
ATGAATTATTTTACCCGGTCGAGACAATATGGATCCAAATAAAGCTAATA
GCATCCTGTTTTATTCATGTCAAATATTAACGTATTGTTGATGTTAAAAG
GAAATGCTTTATCAGATTATATTTCGACATcgtgtttgtttattttgatt
atGGTGAGCATGTCATGGTATACAACATGGTAAATTATTTCCGCAGGTCA
ATATTTTTGCAGTATGTTCAAATAATATGTTGAGTTTGAAAGACTAGATA
ACGGTAGAAGCTAGTACCGAGGTGGCAGAGGGTGACTGGGGAGCAGCCCC
CCTCTAATGGGGTTACCAATAGGAAAAACGCACCGCTGATTACCGATTTT
GCatccttttccttttttttcacatgaaatagcatttttagcaaaatttt
ccagaaatttcAGGCTCACTGCTTTCACCTGTTTTCCCCCAGTTTGCCTT
AATATTTGGTAAGTCACCATTGGTCATTGGCCAGCGCAGTATGttaatca
agttttttttaacCTGAATCAAGAAATGCAGAAATACTATATTCTCATAT
TCTCATGTAAATAGCTTACAATATACAGTATTTATATTTTCgtacttttg
aaaaatcagGAATAGAACAATGCGACAGTCCTTGAGataagaaacaaaaa
catacaATTTATTTCCTGATACAGATACAGGGAGGGGAAAAATTCAACAG
CTCGGCACAGACAGGattaaaaataaatcacaaaccatgaaatttttgtg
aattttggtTGGATTGGATTTATTTCATCCGAATGAATCTCTGATACAGA
ACTGTTTACGAGGAAATCATACATTTATCATAATGTC Run BLAST on NCBI transcript from alignment at sc0000215:388633..393879- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015703 ID=TCONS_00015703|Name=TCONS_00015703|organism=Clytia hemisphaerica|type=transcript|length=5247bp|location=Sequence derived from alignment at sc0000215:388633..393879- (Clytia hemisphaerica)
AGCAAGGAGTGTACATGACATTTTAGAAAATGCTGACGAAGCATATTTGA
TGGGGAAAGTGTACGATGATAGAGACCTATCAATTGATTACACAGAACTT
GAAAATGAACAGAAAGAAGAAGAAAAGAATAAAGTGGTCAAAGAATTGAT
CTTGGTAAAACAAATTATTTTTTCCTAGTAAAACTTTTTAGAGCCGATAA
ATGTTGGCTTAGCCGGGAATTAACTAGTTTTCGCATTTCTTATTGTTTTG
AAATTTTAAGATGTTTTTAATATGGTGCACGTTTTTTTATAATTAGCAGT
GAACTTCAGTGGAGACCCAATTGTTCTCCTTTTTTCGAGATTTTCAGGCT
CAACTATTCTAAAACTGTTCTTAATTATTCTTAATTATGCATTCTTCACT
CACTTGTTGGCTTAAACGGGTTTAAAATCAGCATTTTCTTACGCTAAGAT
TGTTCTTAATCTACTCTTAGGTTTTGGCAAAAATTGAGCCTCATGTTCTT
ACAAACTTGTTTTTTTATTAAGCAGCCCATTTTTCTAAGGGCTTCAGAAG
TTTTTTATGTTTCGGCTATAAATCTCATTCTTACAACTTTCTATGAGTGC
AAATTATTAGTCGGCTTTTAGTAAATGTCGTTTTAAAAGAAGGGATAAAT
TAGAAAATCAAAATATCTATAAAATTATAAAAGATATCTGGTTACTTGTC
AGAATTGTTTTCGTCATCCTTTACATACCTTTACATAAAAAGAAGGGCTC
ATACAGGATAATACAATGATATAATCAATGTAATGTCTAAGTATATAAAC
AAACTTTTTATAAGAAACATTAGGAGAGTTTTGAATATTCCATTGAATAA
AACTGGTATTAAAACCAAGATCGCCGAACACAGTTTCAATGCTTCCAAGC
ATTTTTCTTAAAGAAATTTCAAGGCAGAAGATAAAAAAATGTATAGGTAA
GAGAGATATTTTCCGTAAGGAATCGTCAAGAAAGATAAGGGAACCTTTTA
AACGAATATGAACCATGATTAGTTCTTATAGAAAACAGACCCTATCTAAT
TCACTGATCAACGATAAGTATCATGTGAAAAGAACTTGTTGGGGGTTTTT
ATCACAGAGGAATGTATAGTTTTGATGCGGTTTGAGAAAAGATAAACTTT
TTTTGATAAAAGTTCGCTTATAATGAAAAGTCCACGTCTAGATTTTTGTT
AGAGACTCGTATTGTAAAGACATTTATTTTGATTGAGTCTGTCTGAGAGG
AGGATAGGATTTAAAGGCGGAAAAATGGAGTTTAAAGAAAGGTTGGTACT
AATTCTCATTTCGCCATTTCGGTACTTGGTTACAAAAGAATAAGCATTTT
AGGGCATAAACAGCATAAACAGGAAATCCTTGAAGAACTATATTTTGAGG
GTATGAAAACCGTCCGTAATAGGCATTTTCATAAATTACGTCACGAACAT
CACTTGCCTCGTATTCAAACAATTACCATGGTTATTATGTCCCTCATAAA
AAGTAGTTTAAATAAAATCTGCTGGCGGAGTTAATCATCATGGCAATAAT
ATCAAAACGAGGCAAGTGAGTGACGTAATTTGTGAAAAGGTCTATAGGAA
GCAGGGTTTTAAGAAATAGTGATGGTTAAAGCCATAAGTTTTCGAAAGAA
AGATTTTTGATTATCAAAGGCAACAAAACATGAAAGCATGGAGCGATTTC
ACTGGTAGATGCAAATTGAACTTCGTTTGTTTGTTATGTTTTACAAACAA
TTTCCATAGTAGATTAGAAAATATTTTCTGCGGAAAGAAAATATTGACCT
AAAACAGGACTTGGTTACCACTCATTGCAAAGCACATATCAAGTGCTCTA
AGATGGAGAATTTGAAGTAAGAGTGGGACTTTTTTTCGTAAACACTTCCT
CGTAGGGTTTTTTATAAAGATGCACCTTAGTTTTACGTATTAATAAATTG
AGTACGGAGGAGTATTCAAAGGTCGAGCGAGATATCTCCTTCGTTGGGAC
TGATTTTTCTGTTTGTTTACTTTTTTGTAGTCCTTGCAAGAAATGGAATT
CCCACCAACTCCAATAGGAGAACGAAAGCTTTCACCAGCACCTGGCAAAA
GTCATTTTTCAACCAAGCAATTACCGAAGAGGATGGCTAGTCAAGATTTA
GATGACTCACATCGTAGTTACGAGACCATCGAACAGTTACGAGCACGTTT
GAAGCAGAATTATTTAGAGGCGAAACGGCAACGCGAAAAATATTTGAATT
TGAGTCCAACTCGTAAGAAGGACAGTGCTAAGAATTTAAATGGATACCGT
TCAAAAACCCAACAACAACCTGTTTTCAAGAACTATAAACAAAAATCTGA
AGTCCAAGAACGAACAAACGGAGTTGTTAAGTTCGATAATCAACTATCAG
TCAACGGCGTTCGAACAAATAGCCCGAACGATCAATCTACGTCTGAATTA
TCACAAGCTCTTTCTAACAAGAAAACAACAAGCGATCGTGAAATAATACC
GACCGTCTATTTAGGTGATCAATCCAATCTGAAATCAAGAGACTCTACTA
GTAATTTGAACGGATTTTCAAAACAAGAAAGTTTTGACCAACACCGTTCA
CCACCACCGAAGACCAGTGAAAAACCACAAGGCTATAAAACGAACAATGC
CTCAAAATCAACGGTAAAATCTCCAAAACAGATGCATCAAATGTCGAGAG
ATAATTCAATCGATCTAGATCGACCTTCGAATCAAAATCCAGGATCGACG
AATCTAACCCGCAAGAACAGTCTTAAGAACTTGGTCAAGAGGAGCGACAG
TCGGAGTAGCATAAAGAAAGACATTAAGCGTTCACCTGAGATTAATCATA
ATGATATCGATAATGTGCTGACTAATCATAATATAAATGATGACATCAGC
AAAAAGAAAATACACCATGAAGAAGTGAAAGGAGAAGAAGAGGTAGATAG
TTTACCTACAGTTTCTTTCTTACGTCAAAATGGATGTCTCTCCTCGCCAG
TCTCCTTTCTCACGTAGGAGTTCATTGATGCGTTCCACGCCCTAACACTT
GACCCCAGGGCAGATTTATGGCTCTTTTCACTTCAGATCCTAAAGTTTGA
CAGGATACAACTCTGAAACTAAGAGTTACTTAGTTACTAAAACACCCCTA
TCTCTGTGCCCCAGTGGGAATGTTGAGAGCCCAGTGGGGTGGGAATTTTA
AAATCTGAAATTCACTGGGGTGCAAACTTTCATCAAATGTTGAGTGGGGT
GGTAAAAATTTTCTTGATTTTCACTGAGGTTGAGAAACATTTTGGTAACT
TTTTGCATGAGCTGACTTTCACCTGTAGATAATGGTTCCAGAAGAAGGGG
GAGAAGATTCTAGCTGATTTATTTTTGAAAGGAAAGTTCTACTGGGGTAT
GTTTAAATCAGGATATTTTGAGTGGGGTATGTGTATATGTATACGGGATG
TATACGTTTATCGATCTGAATGGGCTATTTCTTAACTACAACATTTCAGC
TGGGTGAGTGATTTGTCCAGTGGGACGAAAATATGGGCCATTTATGGAAG
AATTTTTCACTGGGGTGATAAGGGGGATTGATTCCACCGGGTGACAATAT
GTTAAGGATAATAAGATAGTTTTAGACCGGTCCCTAAGTACACACAGCTG
GAACAGAAAGATCAAACTCAACCATGATTAAGTTTTCATCAAAGTGTTTT
GCTAACGCAAAGATCTTCACTGAGTATTTGTACTGGAGGCAGTCTATTTT
TTGTTTCATTGATTAAAAACACTATTTCAATTTGCGTTGACAGTTCTTGT
GGTCTCTGTTAAGTTTGAAAACACTCATCATCGATACTTCTAAGAGAGCG
AATGGTTATTTCTGTCACACACAAAGTAAACAAATCCTATATTTGACAAG
ATAGGCTTTCAACTTTCCTCTGTTCAACAATCAAAAAGGTTAATCCTTGT
TCCAGCTATCTAACAATACAAAAAGACTTTTTCGATAGAATTATTCTCTT
CCACGATACATACCACCAAAAATTAATTCTTGTAATGACCCATTTGACCC
TTTTAAACTCTAGCATAATCATACTTCATGTTGGCATTTGGTTTATTAGG
TGTAATAAGGTTATTTTCCTACAGTGAAATTTCGAAAACAACAAGAGCTT
TGAGGTATAATTATTTTTCTTTTTAGGGTAACGAATTCGATGTTATGGAC
ATGTTAGCGAATTGGTAGATGGCATGGTTAAACTTATACAAATATGTGTC
ATGTATCTCGCGTATTTAACATGGAAGTAGCCACCGAGCCACCAACAGAA
CTAATGAACAATAGGGTATATGTTCTGGACGTGCTTGAAATCAATTAGCT
ACAGACAATCGATGCAACAATAGAGACAATTTGTGAATTGTGATCCTTTA
CTTGTTTGAAATGAATTATTTTACCCGGTCGAGACAATATGGATCCAAAT
AAAGCTAATAGCATCCTGTTTTATTCATGTCAAATATTAACGTATTGTTG
ATGTTAAAAGGAAATGCTTTATCAGATTATATTTCGACATCGTGTTTGTT
TATTTTGATTATGGTGAGCATGTCATGGTATACAACATGGTAAATTATTT
CCGCAGGTCAATATTTTTGCAGTATGTTCAAATAATATGTTGAGTTTGAA
AGACTAGATAACGGTAGAAGCTAGTACCGAGGTGGCAGAGGGTGACTGGG
GAGCAGCCCCCCTCTAATGGGGTTACCAATAGGAAAAACGCACCGCTGAT
TACCGATTTTGCATCCTTTTCCTTTTTTTTCACATGAAATAGCATTTTTA
GCAAAATTTTCCAGAAATTTCAGGCTCACTGCTTTCACCTGTTTTCCCCC
AGTTTGCCTTAATATTTGGTAAGTCACCATTGGTCATTGGCCAGCGCAGT
ATGTTAATCAAGTTTTTTTTAACCTGAATCAAGAAATGCAGAAATACTAT
ATTCTCATATTCTCATGTAAATAGCTTACAATATACAGTATTTATATTTT
CGTACTTTTGAAAAATCAGGAATAGAACAATGCGACAGTCCTTGAGATAA
GAAACAAAAACATACAATTTATTTCCTGATACAGATACAGGGAGGGGAAA
AATTCAACAGCTCGGCACAGACAGGATTAAAAATAAATCACAAACCATGA
AATTTTTGTGAATTTTGGTTGGATTGGATTTATTTCATCCGAATGAATCT
CTGATACAGAACTGTTTACGAGGAAATCATACATTTATCATAATGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015703-exon-sc0000215-1575043694:393726..393879 | TCONS_00015703-exon-sc0000215-1575043694:393726..393879 | Clytia hemisphaerica | exon |
| TCONS_00015703-exon-sc0000215-1575043694:390938..391849 | TCONS_00015703-exon-sc0000215-1575043694:390938..391849 | Clytia hemisphaerica | exon |
| TCONS_00015703-exon-sc0000215-1575043694:388633..389703 | TCONS_00015703-exon-sc0000215-1575043694:388633..389703 | Clytia hemisphaerica | exon |
| TCONS_00015703-exon-sc0000215-1510915933:393726..393879 | TCONS_00015703-exon-sc0000215-1510915933:393726..393879 | Clytia hemisphaerica | exon |
| TCONS_00015703-exon-sc0000215-1510915933:390938..391849 | TCONS_00015703-exon-sc0000215-1510915933:390938..391849 | Clytia hemisphaerica | exon |
| TCONS_00015703-exon-sc0000215-1510915933:388633..389703 | TCONS_00015703-exon-sc0000215-1510915933:388633..389703 | Clytia hemisphaerica | exon |
| TCONS_00015703-exon-sc0000215-1491911889:393726..393879 | TCONS_00015703-exon-sc0000215-1491911889:393726..393879 | Clytia hemisphaerica | exon |
| TCONS_00015703-exon-sc0000215-1491911889:390938..391849 | TCONS_00015703-exon-sc0000215-1491911889:390938..391849 | Clytia hemisphaerica | exon |
| TCONS_00015703-exon-sc0000215-1491911889:388633..389703 | TCONS_00015703-exon-sc0000215-1491911889:388633..389703 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000215 | supercontig | sc0000215:388633..393879 - |
Blast
The following BLAST results are available for this feature:
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