TCONS_00015696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015696
Unique NameTCONS_00015696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015696 ID=TCONS_00015696|Name=TCONS_00015696|organism=Clytia hemisphaerica|type=transcript|length=1461bp
TTTTTATACTACTTGTCTGAAGGCTAGTATATACTATCATGTAGAGAACA
TACTCGACTTGGTTTTTGGAAGGCTCCCTCAACAGATGGAATGACTAAAA
AGGAGAAGGCAATCGAAAATATCGATGCCTTCACACATTTTGTAGCTGGT
TGGGTCTCAGGTTGTGCGGGCGTGTTGGTGAGTCATCCTTTGGACACAGT
GAAAGTTCGTTTACAAACGCAAGGCGTATCTGCAATACAACAACAGTATC
GGGGTACATGGCATTGTCTATCTGAAAccatcaaaaatgaaaagGTTTAT
GGGTTGTTCAAAGGTATGTCGTCACCGCTCCTGGGAACTGCTCTTTGGAA
TGCTGTTATCTTCGGTACCTATGGCAACACCATACGCTGGTTGGCTGGTG
ATAGCCTAGAAGAACAGCATCGGATGAGTAATGTTGTAATCGCTAGTCTA
GCGTCAGGTTTCACTCAAACTTTTGTTATTACACCTCTGGAgctcaccaa
aacgaggctacaAATTCAAACATCGcagaaaaatcaagtttataAAGgtt
tgattgattgttgtCGACAGATCTATCGCCAACAAGGTTTTTTCGGACTC
TTCAAAGGGTTCAATGCAACGTTCATTCGAGATGCAATCGGTTTCACTGC
GTTCTTTGGAATTTTCGAACAATTTTCACGATGGATATCTAAAGAAGGGC
CACCGTATCGTGATATTACCATAGTTGGGCACGTTGTGGCCGGAGGGCTT
ACGGGTGCCATATCATGGGGATGCGCTTTTCccgctgacgtcatcaaatg
tCGGATTCAAGTAGATTACGAGGGGCGATATAACGGTTTTATTGACTGTG
TTCGCAAATCTTATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGGTTTT
TGGCCCTGTGTTTTGAGAGGGTTTCCAATGAACGCAGCAATCTTTAGTAT
TTATCATTATATGATCCGTGTTTATGAAGACCACGATATGGCAGATAGGA
TTGTAACAAAGTTTTTGTACGTGGATTGATTGAATGCAATAGTGTGACCT
TTTTGAATGTTAACTTCATGTTCATGCATACGCAATACATCTTCGAAAAC
TTTTAAGGCCTGGATCCGCCATAACTACtgaaacacccctgtatcacaga
ctggaaaatgaactttgatttcatatcccaaaattcatttcaaaattcaa
ttggACGAAAACTTGCATTccgaaaccatccccactggaacaatagaatt
tctatcctcattgggatttcgatataaatttttatccccactgagggaaa
acttccaccgggtctgtgagacagggatgaaATGAGAGGCCCTCAGACTT
ATCATAACTTGAAATATTAAATAAGCAAGTTAGACGTCGAAAAGTGAATC
catttcttaaaatttgttcattttaatTTGAATACATCTTTTGGACGTAT
ATCAAGAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000215:344624..348438-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015696 ID=TCONS_00015696|Name=TCONS_00015696|organism=Clytia hemisphaerica|type=transcript|length=3815bp|location=Sequence derived from alignment at sc0000215:344624..348438- (Clytia hemisphaerica)
TTTTTATACTGTAAATATTGACCGTTTTATTTCAATCACATATCTTAAAA
CGATTTTATTCATGGAAAAAGGTTTTGAGAGCTAAAAACTATTTTAAGAC
ACAAATTTTTAGCTATATGTAGTTTTGCTGAAACATAATGTGATGTTTAA
TGTGCGTTTTTTTGTCTTAAATTATATTTTAAAGTTTTTACTGTTTATAT
ACGTAAAAAGAGAAATGCTGAGATTATCAACCACAAAAGTATGATAGGTA
TTTTTAATTGGAATGCCTTCAATAATTTTTAAACTGTTTTTCCATTTAGA
CTTGTCTGAAGGCTAGTATATACTATCATGTAGAGAACATACTCGACTTG
GTTTTTGGAAGGCTCCCTCAACAGATGGAATGACTAAAAAGGAGAAGGCA
ATCGAAAATATCGATGCCTTCACACATTTTGTAGCTGGTTGGGTCTCAGG
TACTTATACTTATACACTTTTGGAGATCAAGAAATTAATGATGAAAAAAA
AATTATATTATTAGACTTTGTTTACACCTCTGTATCAAAGGCAGCTAATT
TCGTGACTTGAAGTCGACCAATAGAAATTTGTTTTCGTTTTAAAACAATT
TGGAACGTGTGACTACTGTTTCAGCAATTGNTTTTAACCAAATTGAAATT
TGTTTTCGTTTTAATACAATTTGGAGCGTGTGACTACTGTTTCAGCAATT
GCTATTATTCATCATAAGTAGGTCTATTAAGCCAAGTAGTCTGTCTGCCT
GCCTATAATAGAGCTATTCTAGGTTTGATACCCTATTTTTACTAATTTGA
AAATTTGCAGGCAGGCAGACTACTTGGCTTAATAGACCTACTTATGATAG
TTATAATTATCACTATTAATTATAGATACTTATGATAGGTCAAGACCTAC
AATTTGCTTAAAATTTTACACTAAGATTTATTTTAAAGAGGACTTTGCAC
CTTTGGATGATAATCAGAGAGTAAATCCAATATTTTGTTGTCACAGGTTG
TGCGGGCGTGTTGGTGAGTCATCCTTTGGACACAGTGAAAGTTCGTTTAC
AAACGCAAGGCGTATCTGCAATACAACAACAGTATCGGGGTACATGGCAT
TGTCTATCTGAAACCATCAAAAATGAAAAGGTAGTTCTCATCATTCTTCA
CTTCGATTATGTAAAAACTTTTTTTCTGATTGCATTCAAAAATAGAACCC
CAAAAAGTGAGGTTTTCAATCACAGCCACTTTTTAGCCCACAACGTTGAT
ATTCTTGTGGCTGCTGTGTAGTACAAAATTCTATAAAATAAGGAAATTGA
CGAGCTTTCCAAAAATGTGGCTCCCTTTGAAGTTGAGTGATTCAGTCTTG
AAATATAAGATGGCAAAGTGAGGGCAGGTTTTGTGGCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNATTTTGGTTCCATTTTTGATATTTTGTGGATAAACCCT
TTTGCTACGAGTTTCATCTGACTGAAAAATATGCATTCCTCTTGTTGTAT
TTTTCTTGGGCTAAATTAAAGCCCCTTTTGTACTTTCTACTCATTCTGTT
TAGGTTTATGGGTTGTTCAAAGGTATGTCGTCACCGCTCCTGGGAACTGC
TCTTTGGAATGCTGTTATCTTCGGTACCTATGGCAACACCATACGCTGGT
TGGCTGGTGATAGCCTAGAAGAACAGCATCGGATGAGTAATGTTGTAATC
GCTAGTCTAGCGTCAGGTTTCACTCAAACTTTTGTTATTACACCTCTGGA
GCTCACCAAAACGAGGCTACAAATTCAAACATCGCAGAAAAATCAAGTTT
ATAAAGGTTACTTTTTATTGAATTATGGACACTTTAATTTGTTGACAATT
TTTATGTAGTCTTTTTGCTATATTAAAAAGCTATATATCATATGCCATTG
GAAAGATTTCCCAGAAGATAGAATGATATAAAAGATTAAAGAATTTTGCA
AAGTTGACAAATGAAGAAGAAAAGGGAAGATGAAAAAATGAAGTTTTTTC
CTATTTTTCTACTGGTACCAAAATCATTACATCAGACCTTTCAGAATTAT
TGAACCGTGCTGATTTCAAATCCGTATTTCTTGTATCTTCCTTAGATAAA
AAGTTACAGCCCTATGAAGTAGGCCTAAAACGGACAAAAATGACCAAAAA
TTAACACATTTTACAGTGCTGTTTTTTATTTGTGTTTTTTATTATTTTCA
GGTTTGATTGATTGTTGTCGACAGATCTATCGCCAACAAGGTTTTTTCGG
ACTCTTCAAAGGGTTCAATGCAACGTTCATTCGAGATGCAATCGGTTTCA
CTGCGTTCTTTGGAATTTTCGAACAATTTTCACGATGGATATCTAAAGAA
GGGCCACCGTATCGTGATATTACCATAGTTGGGCACGTTGTGGCCGGAGG
GCTTACGGGTGCCATATCATGGGGATGCGCTTTTCCCGCTGACGTCATCA
AATGTCGGATTCAAGTAGATTACGAGGGGCGATATAACGGTTTTATTGAC
TGTGTTCGCAAATCTTATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGG
TTTTTGGCCCTGTGTTTTGAGAGGGTTTCCAATGAACGCAGCAATCTTTA
GTATTTATCATTATATGATCCGTGTTTATGAAGACCACGATATGGCAGAT
AGGATTGTAACAAAGTTTTTGTACGTGGATTGATTGAATGCAATAGTGTG
ACCTTTTTGAATGTTAACTTCATGTTCATGCATACGCAATACATCTTCGA
AAACTTTTAAGGCCTGGATCCGCCATAACTACTGAAACACCCCTGTATCA
CAGACTGGAAAATGAACTTTGATTTCATATCCCAAAATTCATTTCAAAAT
TCAATTGGACGAAAACTTGCATTCCGAAACCATCCCCACTGGAACAATAG
AATTTCTATCCTCATTGGGATTTCGATATAAATTTTTATCCCCACTGAGG
GAAAACTTCCACCGGGTCTGTGAGACAGGGATGAAATGAGAGGCCCTCAG
ACTTATCATAACTTGAAATATTAAATAAGCAAGTTAGACGTCGAAAAGTG
AATCCATTTCTTAAAATTTGTTCATTTTAATTTGAATACATCTTTTGGAC
GTATATCAAGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008756XLOC_008756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015696-exon-sc0000215-1575043694:348429..348438TCONS_00015696-exon-sc0000215-1575043694:348429..348438Clytia hemisphaericaexon
TCONS_00015696-exon-sc0000215-1575043694:347990..348139TCONS_00015696-exon-sc0000215-1575043694:347990..348139Clytia hemisphaericaexon
TCONS_00015696-exon-sc0000215-1575043694:347309..347442TCONS_00015696-exon-sc0000215-1575043694:347309..347442Clytia hemisphaericaexon
TCONS_00015696-exon-sc0000215-1575043694:345933..346185TCONS_00015696-exon-sc0000215-1575043694:345933..346185Clytia hemisphaericaexon
TCONS_00015696-exon-sc0000215-1575043694:344624..345537TCONS_00015696-exon-sc0000215-1575043694:344624..345537Clytia hemisphaericaexon
TCONS_00015696-exon-sc0000215-1510915933:348429..348438TCONS_00015696-exon-sc0000215-1510915933:348429..348438Clytia hemisphaericaexon
TCONS_00015696-exon-sc0000215-1510915933:347990..348139TCONS_00015696-exon-sc0000215-1510915933:347990..348139Clytia hemisphaericaexon
TCONS_00015696-exon-sc0000215-1510915933:347309..347442TCONS_00015696-exon-sc0000215-1510915933:347309..347442Clytia hemisphaericaexon
TCONS_00015696-exon-sc0000215-1510915933:345933..346185TCONS_00015696-exon-sc0000215-1510915933:345933..346185Clytia hemisphaericaexon
TCONS_00015696-exon-sc0000215-1510915933:344624..345537TCONS_00015696-exon-sc0000215-1510915933:344624..345537Clytia hemisphaericaexon
TCONS_00015696-exon-sc0000215-1491911889:348429..348438TCONS_00015696-exon-sc0000215-1491911889:348429..348438Clytia hemisphaericaexon
TCONS_00015696-exon-sc0000215-1491911889:347990..348139TCONS_00015696-exon-sc0000215-1491911889:347990..348139Clytia hemisphaericaexon
TCONS_00015696-exon-sc0000215-1491911889:347309..347442TCONS_00015696-exon-sc0000215-1491911889:347309..347442Clytia hemisphaericaexon
TCONS_00015696-exon-sc0000215-1491911889:345933..346185TCONS_00015696-exon-sc0000215-1491911889:345933..346185Clytia hemisphaericaexon
TCONS_00015696-exon-sc0000215-1491911889:344624..345537TCONS_00015696-exon-sc0000215-1491911889:344624..345537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:344624..348438 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.828987	0	0	4.46706e-05	4.54721e-06	0.00034434	0	1.02739e-07	2.82661	0	0.00165774	0	0	0	3.2617e-09	0.944353	1.20728e-07	0	0.632239	0	4.68253e-08	3.29807e-08	1.97857e-06	0	0	1.5305	0	0	0
Blast
[Close]
BLAST of TCONS_00015696 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 6.717e-68
Identity = 117/273 (42.86%), Postives = 160/273 (58.61%), Query Frame = 1 
Query:  139 FVAGWVSGCAGVLVSHPLDTVKVRLQTQGVSAIQQQYRGTWHCLSETIKNEKVYGLFKGMSSPLLGTALWNAVIFGTYGNTIRWLAGDSLEEQHRMSNVVIASLASGFTQTFVITPLELTKTRLQIQTSQKNQVYKGLIDCCRQIYRQQGFFGLFKGFNATFIRDAIGFTAFFGIFEQFSRWISKEGPPYRDITIVGHVVAGGLTGAISWGCAFPADVIKCRIQVD---YEGRYNGFIDCVRKSYKEEGPALFRRGFWPCVLRGFPMNAAIFS 948
            F+AG   G AGVLV HP DTVKVRLQ Q V   + QYRGT HC    IK E V GL+KG+ SPL+G    NA++FG  GNT+R L  DS   Q       +A  A+G  Q  +  P+EL KTRLQ+Q +   + YKG +DC  QIY  +G  G+ +G  +T +R+   F  +F  ++  +R +  E  P   + +   ++AGG +G +SW   +P DV+K R+Q D      RY G +DCV +SY+ EG  +F RG    +LR FP+NAA F+
Sbjct:    5 FLAGCAGGVAGVLVGHPFDTVKVRLQVQSVE--KPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQF------LAGAAAGAIQCVICCPMELAKTRLQLQDAGPARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCE--PGDRLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFPVNAATFA 267
The following BLAST results are available for this feature:
BLAST of TCONS_00015696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCATL6.717e-6842.86Mitochondrial basic amino acids transporter OS=Hom... [more]
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