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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015693 ID=TCONS_00015693|Name=TCONS_00015693|organism=Clytia hemisphaerica|type=transcript|length=1648bp TTTTTATACTACTTGTCTGAAGGCTAGTATATACTATCATGTAGAGAACA TACTCGACTTGGTTTTTGGAAGGCTCCCTCAACAGATGGAATGACTAAAA AGGAGAAGGCAATCGAAAATATCGATGCCTTCACACATTTTGTAGCTGGT TGGGTCTCAGGTTGTGCGGGCGTGTTGGTGAGTCATCCTTTGGACACAGT GAAAGTTCGTTTACAAACGCAAGGCGTATCTGCAATACAACAACAGTATC GGGGTACATGGCATTGTCTATCTGAAAccatcaaaaatgaaaagGTTTAT GGGTTGTTCAAAGGTATGTCGTCACCGCTCCTGGGAACTGCTCTTTGGAA TGCTGTTATCTTCGGTACCTATGGCAACACCATACGCTGGTTGGCTGGTG ATAGCCTAGAAGAACAGCATCGGATGAGTAATGTTGTAATCGCTAGTCTA GCGTCAGGTTTCACTCAAACTTTTGTTATTACACCTCTGGAgctcaccaa aacgaggctacaAATTCAAACATCGcagaaaaatcaagtttataAAGgtt tgattgattgttgtCGACAGATCTATCGCCAACAAGGTTTTTTCGGACTC TTCAAAGGGTTCAATGCAACGTTCATTCGAGATGCCATCGGTTTCACTGC GTTCTTTGGAATTTTCGAACAATTTTCACGATGGATATCTAAAGAAGGGC CACCGTATCGTGATATTACCATAGTTGGGCACGTTGTGGCCGGAGGGCTT ACGGGGGCCATATCATGGGGATGCGCTTTTCccgctgacgtcatcaaatg tCGGATTCAAGTAGATTACGAGGGGCGATATAACGGTTTTATTGACTGTG TTCGCAAATCTTATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGGTTTT TGGCCCTGTGTTTTGAGAGGGTTTCCAATGAACGCAGCAATCTTTAGTAT TTATCATTATATGATCCGTGTTTATGAAGACCACGATATGGCAGATAGGA TTGTAACAAAGTTTTTGTACGTGGATTGATTGAATGCAATAGTGTGATGT TTTTGAATGTTAACTTCATGTTCATGCATACGCAATACATCTTCGAAAAC TTTTAAGGCCTGGATCCGCCATAACTACTGAAACACCCCTGTATCACAGA CTGGAAAATGAACTTTGATTTCATATCCCAAAATTCATTTCAAAATTCAA TTGGACGAAAACTTGCATTCCGAAACCATCCCCACTGGAACAATAGAATT TCTATCCTCATTGGGATTTCGATATAAATTTTTATCCCCACTGAGGGAAA ACTTCCACCGGGTCTGTGAGACAGGGATGAAATGAGAGGCCCTCAGACTT ATCATAACTTGAAATATTAAATAAGCAAGTTAGACGTCGAAAAGTGAATC CATTTCTTAAAATTTGTTCATTTTAATTTGAATACATCTTTTGGACGTAT ATCAAGAAAATTCCTTTCGTCCCGCTCGTATTAATTGGAGTCGTTTACGT ACAAGAAACTACTGTTGAATTTTAACTAAATATTTTTAATATATACTTTA GATAGGAAAACACAAAAATTATATAATATTTTTTACAAATCATCCTTGTT CATTTATAAACGTTTTTTATTGAAAATTCTTTCTCAGCTAGAACCACG Run BLAST on NCBI transcript from alignment at sc0000215:341838..348438- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015693 ID=TCONS_00015693|Name=TCONS_00015693|organism=Clytia hemisphaerica|type=transcript|length=6601bp|location=Sequence derived from alignment at sc0000215:341838..348438- (Clytia hemisphaerica) TTTTTATACTGTAAATATTGACCGTTTTATTTCAATCACATATCTTAAAA
CGATTTTATTCATGGAAAAAGGTTTTGAGAGCTAAAAACTATTTTAAGAC
ACAAATTTTTAGCTATATGTAGTTTTGCTGAAACATAATGTGATGTTTAA
TGTGCGTTTTTTTGTCTTAAATTATATTTTAAAGTTTTTACTGTTTATAT
ACGTAAAAAGAGAAATGCTGAGATTATCAACCACAAAAGTATGATAGGTA
TTTTTAATTGGAATGCCTTCAATAATTTTTAAACTGTTTTTCCATTTAGA
CTTGTCTGAAGGCTAGTATATACTATCATGTAGAGAACATACTCGACTTG
GTTTTTGGAAGGCTCCCTCAACAGATGGAATGACTAAAAAGGAGAAGGCA
ATCGAAAATATCGATGCCTTCACACATTTTGTAGCTGGTTGGGTCTCAGG
TACTTATACTTATACACTTTTGGAGATCAAGAAATTAATGATGAAAAAAA
AATTATATTATTAGACTTTGTTTACACCTCTGTATCAAAGGCAGCTAATT
TCGTGACTTGAAGTCGACCAATAGAAATTTGTTTTCGTTTTAAAACAATT
TGGAACGTGTGACTACTGTTTCAGCAATTGNTTTTAACCAAATTGAAATT
TGTTTTCGTTTTAATACAATTTGGAGCGTGTGACTACTGTTTCAGCAATT
GCTATTATTCATCATAAGTAGGTCTATTAAGCCAAGTAGTCTGTCTGCCT
GCCTATAATAGAGCTATTCTAGGTTTGATACCCTATTTTTACTAATTTGA
AAATTTGCAGGCAGGCAGACTACTTGGCTTAATAGACCTACTTATGATAG
TTATAATTATCACTATTAATTATAGATACTTATGATAGGTCAAGACCTAC
AATTTGCTTAAAATTTTACACTAAGATTTATTTTAAAGAGGACTTTGCAC
CTTTGGATGATAATCAGAGAGTAAATCCAATATTTTGTTGTCACAGGTTG
TGCGGGCGTGTTGGTGAGTCATCCTTTGGACACAGTGAAAGTTCGTTTAC
AAACGCAAGGCGTATCTGCAATACAACAACAGTATCGGGGTACATGGCAT
TGTCTATCTGAAACCATCAAAAATGAAAAGGTAGTTCTCATCATTCTTCA
CTTCGATTATGTAAAAACTTTTTTTCTGATTGCATTCAAAAATAGAACCC
CAAAAAGTGAGGTTTTCAATCACAGCCACTTTTTAGCCCACAACGTTGAT
ATTCTTGTGGCTGCTGTGTAGTACAAAATTCTATAAAATAAGGAAATTGA
CGAGCTTTCCAAAAATGTGGCTCCCTTTGAAGTTGAGTGATTCAGTCTTG
AAATATAAGATGGCAAAGTGAGGGCAGGTTTTGTGGCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNATTTTGGTTCCATTTTTGATATTTTGTGGATAAACCCT
TTTGCTACGAGTTTCATCTGACTGAAAAATATGCATTCCTCTTGTTGTAT
TTTTCTTGGGCTAAATTAAAGCCCCTTTTGTACTTTCTACTCATTCTGTT
TAGGTTTATGGGTTGTTCAAAGGTATGTCGTCACCGCTCCTGGGAACTGC
TCTTTGGAATGCTGTTATCTTCGGTACCTATGGCAACACCATACGCTGGT
TGGCTGGTGATAGCCTAGAAGAACAGCATCGGATGAGTAATGTTGTAATC
GCTAGTCTAGCGTCAGGTTTCACTCAAACTTTTGTTATTACACCTCTGGA
GCTCACCAAAACGAGGCTACAAATTCAAACATCGCAGAAAAATCAAGTTT
ATAAAGGTTACTTTTTATTGAATTATGGACACTTTAATTTGTTGACAATT
TTTATGTAGTCTTTTTGCTATATTAAAAAGCTATATATCATATGCCATTG
GAAAGATTTCCCAGAAGATAGAATGATATAAAAGATTAAAGAATTTTGCA
AAGTTGACAAATGAAGAAGAAAAGGGAAGATGAAAAAATGAAGTTTTTTC
CTATTTTTCTACTGGTACCAAAATCATTACATCAGACCTTTCAGAATTAT
TGAACCGTGCTGATTTCAAATCCGTATTTCTTGTATCTTCCTTAGATAAA
AAGTTACAGCCCTATGAAGTAGGCCTAAAACGGACAAAAATGACCAAAAA
TTAACACATTTTACAGTGCTGTTTTTTATTTGTGTTTTTTATTATTTTCA
GGTTTGATTGATTGTTGTCGACAGATCTATCGCCAACAAGGTTTTTTCGG
ACTCTTCAAAGGGTTCAATGCAACGTTCATTCGAGATGCAATCGGTTTCA
CTGCGTTCTTTGGAATTTTCGAACAATTTTCACGATGGATATCTAAAGAA
GGGCCACCGTATCGTGATATTACCATAGTTGGGCACGTTGTGGCCGGAGG
GCTTACGGGTGCCATATCATGGGGATGCGCTTTTCCCGCTGACGTCATCA
AATGTCGGATTCAAGTAGATTACGAGGGGCGATATAACGGTTTTATTGAC
TGTGTTCGCAAATCTTATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGG
TTTTTGGCCCTGTGTTTTGAGAGGGTTTCCAATGAACGCAGCAATCTTTA
GTATTTATCATTATATGATCCGTGTTTATGAAGACCACGATATGGCAGAT
AGGATTGTAACAAAGTTTTTGTACGTGGATTGATTGAATGCAATAGTGTG
ACCTTTTTGAATGTTAACTTCATGTTCATGCATACGCAATACATCTTCGA
AAACTTTTAAGGCCTGGATCCGCCATAACTACTGAAACACCCCTGTATCA
CAGACTGGAAAATGAACTTTGATTTCATATCCCAAAATTCATTTCAAAAT
TCAATTGGACGAAAACTTGCATTCCGAAACCATCCCCACTGGAACAATAG
AATTTCTATCCTCATTGGGATTTCGATATAAATTTTTATCCCCACTGAGG
GAAAACTTCCACCGGGTCTGTGAGACAGGGATGAAATGAGAGGCCCTCAG
ACTTATCATAACTTGAAATATTAAATAAGCAAGTTAGACGTCGAAAAGTG
AATCCATTTCTTAAAATTTGTTCATTTTAATTTGAATACATCTTTTGGAC
GTATATCAAGAAAATTCCTTTCGTCCCGCTCGTATTAATTGGAGTCGTTT
ACGTACAAGAAACTACTGTTGAATTTTAACTAAATATTTTTAATATATAC
TTTAGATAGGAAAACACAAAAATTATATAATATTTTTTACAAATCATCCT
TGTTCATTTATAAACGTTTTTTATTGAAAATTCTTTCTCAGCTAGAACCA
CGACAAATATTTTTCTTTATATACTTTTCCGTGTCTTCTTTGGTTCGAAA
GACCAGGAAAGTATGAACCAATGTTTATCCCACGGCTGCTAGACCTGTCA
AAATTTTGAAAATCGCTCACTCACTATGGTAAGAAAGGTCCGAATTTTAT
AGGTGCCAATTTTTTTTTTTCGGACACCAGTTTATTTTACTTTGAAATTT
CGTTCAGTGATAGGCTAATAGGAAGCACAAACTCAATAGTTGATGCCAAT
AGTTTATTGTCGCCTTGAAAATATATTTTATCTGCGTGTTTGCGGCTTTT
GTTTGATATTCAGAAAACTCCCACTCTCTTATCCTATCACCCGCAACAAA
TTACTTTCATCTTTTCGAAAATAAACACATAATTCTCTTGCGGTATATAC
ACCATCAACACTAACGGTCAATATTCTGTTTTGGTTTTTCTGGTTCGCTG
AAAACCCACACTTGACTATAATTGCGATTCGCCCATTAAAATATCATTAA
AATATCATTAAATTGTTCAGAGTCCTTAGGAAGGTTCTGTGGTAAGTGTT
GTGGTTTCAATAGCGTCAACATCAAAAAGACTTTAAGAAAGGTATATTAA
TGAAAACATAAACACACCTTCACACAAACATATTTTTCAGTAACAGAGTT
TTTACAAAAGTGACGAAGTTTTCCACGACGAAAAATCTTACTGGTCAACT
TCAAGGGGAGTTACGTCAAAAGAAATTTTCACTACAGTATATGGCCCCCA
AAACGGAGACGGGCCCAAAAACGGAGGTCGTCGTTAAAATGAGGATTCTG
ACTTGTAGATTTATCAGATTTAAACGATTTTTGTTTCTTTTGAAAGAATG
ATGGTTATACTAAAAAATTTTTGAGACAGATTCAAAATAACATATTTGCG
TCTGAAGGAGATATTTTAACACCAAAATTAGATAAAAATTGCATATAACT
CACTCTAGCTCCTTGGATATTGAAAATAAGTTATGAAAATGGGGNAATCG
CTAGTCTAGCGTCAGGTTTCACTCAAACTTTTGTTATTACACCTCTGGAG
CTCACCAAAACGAGGCTACAAATTCAAACATCGCAGAAAAATCAAGTTTA
TAAAGGTTACTTTTTATTGAATTATGGACACTTTAATTTGTTGACAATTT
TTATGTAGTCTTTTTGCTATATTAAAAAGCTATATATCATATGCCATTGG
AAAGATTTCCCAGAAGATAGAATGATATAAAAGATTAAAGAATTTTGCAA
AGTTGACAAATGAAGAAGAAAAGGGAAGATGAAAAAATGAAGTTTTTTCC
TATTTTTCTACTGGTACCAAAATCATTACATCAGACCTTTCAGAATTATT
GAACCGTGCTGATTTCAAATCCGTATTTCTTGTATCTTCCTTAGATAAAA
AGTTACAGCCCTATGAAGTAGGCCTAAAACGGACAAAAATGACCAAAAAT
TAACACATTTTACAGTGCTGTTTTTTATTTGTGTTTTTTATTATTTTCAG
GTTTGATTGATTGTTGTCGACAGATCTATCGCCAACAAGGTTTTTTCGGA
CTCTTCAAAGGGTTCAATGCAACGTTCATTCGAGATGCCATCGGTTTCAC
TGCGTTCTTTGGAATTTTCGAACAATTTTCACGATGGATATCTAAAGAAG
GGCCACCGTATCGTGATATTACCATAGTTGGGCACGTTGTGGCCGGAGGG
CTTACGGGGGCCATATCATGGGGATGCGCTTTTCCCGCTGACGTCATCAA
ATGTCGGATTCAAGTAGATTACGAGGGGCGATATAACGGTTTTATTGACT
GTGTTCGCAAATCTTATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGGT
TTTTGGCCCTGTGTTTTGAGAGGGTTTCCAATGAACGCAGCAATCTTTAG
TATTTATCATTATATGATCCGTGTTTATGAAGACCACGATATGGCAGATA
GGATTGTAACAAAGTTTTTGTACGTGGATTGATTGAATGCAATAGTGTGA
TGTTTTTGAATGTTAACTTCATGTTCATGCATACGCAATACATCTTCGAA
AACTTTTAAGGCCTGGATCCGCCATAACTACTGAAACACCCCTGTATCAC
AGACTGGAAAATGAACTTTGATTTCATATCCCAAAATTCATTTCAAAATT
CAATTGGACGAAAACTTGCATTCCGAAACCATCCCCACTGGAACAATAGA
ATTTCTATCCTCATTGGGATTTCGATATAAATTTTTATCCCCACTGAGGG
AAAACTTCCACCGGGTCTGTGAGACAGGGATGAAATGAGAGGCCCTCAGA
CTTATCATAACTTGAAATATTAAATAAGCAAGTTAGACGTCGAAAAGTGA
ATCCATTTCTTAAAATTTGTTCATTTTAATTTGAATACATCTTTTGGACG
TATATCAAGAAAATTCCTTTCGTCCCGCTCGTATTAATTGGAGTCGTTTA
CGTACAAGAAACTACTGTTGAATTTTAACTAAATATTTTTAATATATACT
TTAGATAGGAAAACACAAAAATTATATAATATTTTTTACAAATCATCCTT
GTTCATTTATAAACGTTTTTTATTGAAAATTCTTTCTCAGCTAGAACCAC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00015693-exon-sc0000215-1575043694:348429..348438 | TCONS_00015693-exon-sc0000215-1575043694:348429..348438 | Clytia hemisphaerica | exon |
| TCONS_00015693-exon-sc0000215-1575043694:347990..348139 | TCONS_00015693-exon-sc0000215-1575043694:347990..348139 | Clytia hemisphaerica | exon |
| TCONS_00015693-exon-sc0000215-1575043694:347309..347442 | TCONS_00015693-exon-sc0000215-1575043694:347309..347442 | Clytia hemisphaerica | exon |
| TCONS_00015693-exon-sc0000215-1575043694:345933..346185 | TCONS_00015693-exon-sc0000215-1575043694:345933..346185 | Clytia hemisphaerica | exon |
| TCONS_00015693-exon-sc0000215-1575043694:341838..342938 | TCONS_00015693-exon-sc0000215-1575043694:341838..342938 | Clytia hemisphaerica | exon |
| TCONS_00015693-exon-sc0000215-1510915933:348429..348438 | TCONS_00015693-exon-sc0000215-1510915933:348429..348438 | Clytia hemisphaerica | exon |
| TCONS_00015693-exon-sc0000215-1510915933:347990..348139 | TCONS_00015693-exon-sc0000215-1510915933:347990..348139 | Clytia hemisphaerica | exon |
| TCONS_00015693-exon-sc0000215-1510915933:347309..347442 | TCONS_00015693-exon-sc0000215-1510915933:347309..347442 | Clytia hemisphaerica | exon |
| TCONS_00015693-exon-sc0000215-1510915933:345933..346185 | TCONS_00015693-exon-sc0000215-1510915933:345933..346185 | Clytia hemisphaerica | exon |
| TCONS_00015693-exon-sc0000215-1510915933:341838..342938 | TCONS_00015693-exon-sc0000215-1510915933:341838..342938 | Clytia hemisphaerica | exon |
| TCONS_00015693-exon-sc0000215-1491911889:348429..348438 | TCONS_00015693-exon-sc0000215-1491911889:348429..348438 | Clytia hemisphaerica | exon |
| TCONS_00015693-exon-sc0000215-1491911889:347990..348139 | TCONS_00015693-exon-sc0000215-1491911889:347990..348139 | Clytia hemisphaerica | exon |
| TCONS_00015693-exon-sc0000215-1491911889:347309..347442 | TCONS_00015693-exon-sc0000215-1491911889:347309..347442 | Clytia hemisphaerica | exon |
| TCONS_00015693-exon-sc0000215-1491911889:345933..346185 | TCONS_00015693-exon-sc0000215-1491911889:345933..346185 | Clytia hemisphaerica | exon |
| TCONS_00015693-exon-sc0000215-1491911889:341838..342938 | TCONS_00015693-exon-sc0000215-1491911889:341838..342938 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000215 | supercontig | sc0000215:341838..348438 - |
Blast
BLAST of TCONS_00015693 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2) HSP 1 Score: 223.016 bits (567), Expect = 2.775e-67 Identity = 117/273 (42.86%), Postives = 160/273 (58.61%), Query Frame = 1
Query: 139 FVAGWVSGCAGVLVSHPLDTVKVRLQTQGVSAIQQQYRGTWHCLSETIKNEKVYGLFKGMSSPLLGTALWNAVIFGTYGNTIRWLAGDSLEEQHRMSNVVIASLASGFTQTFVITPLELTKTRLQIQTSQKNQVYKGLIDCCRQIYRQQGFFGLFKGFNATFIRDAIGFTAFFGIFEQFSRWISKEGPPYRDITIVGHVVAGGLTGAISWGCAFPADVIKCRIQVD---YEGRYNGFIDCVRKSYKEEGPALFRRGFWPCVLRGFPMNAAIFS 948
F+AG G AGVLV HP DTVKVRLQ Q V + QYRGT HC IK E V GL+KG+ SPL+G NA++FG GNT+R L DS Q +A A+G Q + P+EL KTRLQ+Q + + YKG +DC QIY +G G+ +G +T +R+ F +F ++ +R + E P + + ++AGG +G +SW +P DV+K R+Q D RY G +DCV +SY+ EG +F RG +LR FP+NAA F+
Sbjct: 5 FLAGCAGGVAGVLVGHPFDTVKVRLQVQSVE--KPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQF------LAGAAAGAIQCVICCPMELAKTRLQLQDAGPARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCE--PGDRLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFPVNAATFA 267
The following BLAST results are available for this feature:
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