TCONS_00015693 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015693
Unique NameTCONS_00015693
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015693 ID=TCONS_00015693|Name=TCONS_00015693|organism=Clytia hemisphaerica|type=transcript|length=1648bp
TTTTTATACTACTTGTCTGAAGGCTAGTATATACTATCATGTAGAGAACA
TACTCGACTTGGTTTTTGGAAGGCTCCCTCAACAGATGGAATGACTAAAA
AGGAGAAGGCAATCGAAAATATCGATGCCTTCACACATTTTGTAGCTGGT
TGGGTCTCAGGTTGTGCGGGCGTGTTGGTGAGTCATCCTTTGGACACAGT
GAAAGTTCGTTTACAAACGCAAGGCGTATCTGCAATACAACAACAGTATC
GGGGTACATGGCATTGTCTATCTGAAAccatcaaaaatgaaaagGTTTAT
GGGTTGTTCAAAGGTATGTCGTCACCGCTCCTGGGAACTGCTCTTTGGAA
TGCTGTTATCTTCGGTACCTATGGCAACACCATACGCTGGTTGGCTGGTG
ATAGCCTAGAAGAACAGCATCGGATGAGTAATGTTGTAATCGCTAGTCTA
GCGTCAGGTTTCACTCAAACTTTTGTTATTACACCTCTGGAgctcaccaa
aacgaggctacaAATTCAAACATCGcagaaaaatcaagtttataAAGgtt
tgattgattgttgtCGACAGATCTATCGCCAACAAGGTTTTTTCGGACTC
TTCAAAGGGTTCAATGCAACGTTCATTCGAGATGCCATCGGTTTCACTGC
GTTCTTTGGAATTTTCGAACAATTTTCACGATGGATATCTAAAGAAGGGC
CACCGTATCGTGATATTACCATAGTTGGGCACGTTGTGGCCGGAGGGCTT
ACGGGGGCCATATCATGGGGATGCGCTTTTCccgctgacgtcatcaaatg
tCGGATTCAAGTAGATTACGAGGGGCGATATAACGGTTTTATTGACTGTG
TTCGCAAATCTTATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGGTTTT
TGGCCCTGTGTTTTGAGAGGGTTTCCAATGAACGCAGCAATCTTTAGTAT
TTATCATTATATGATCCGTGTTTATGAAGACCACGATATGGCAGATAGGA
TTGTAACAAAGTTTTTGTACGTGGATTGATTGAATGCAATAGTGTGATGT
TTTTGAATGTTAACTTCATGTTCATGCATACGCAATACATCTTCGAAAAC
TTTTAAGGCCTGGATCCGCCATAACTACTGAAACACCCCTGTATCACAGA
CTGGAAAATGAACTTTGATTTCATATCCCAAAATTCATTTCAAAATTCAA
TTGGACGAAAACTTGCATTCCGAAACCATCCCCACTGGAACAATAGAATT
TCTATCCTCATTGGGATTTCGATATAAATTTTTATCCCCACTGAGGGAAA
ACTTCCACCGGGTCTGTGAGACAGGGATGAAATGAGAGGCCCTCAGACTT
ATCATAACTTGAAATATTAAATAAGCAAGTTAGACGTCGAAAAGTGAATC
CATTTCTTAAAATTTGTTCATTTTAATTTGAATACATCTTTTGGACGTAT
ATCAAGAAAATTCCTTTCGTCCCGCTCGTATTAATTGGAGTCGTTTACGT
ACAAGAAACTACTGTTGAATTTTAACTAAATATTTTTAATATATACTTTA
GATAGGAAAACACAAAAATTATATAATATTTTTTACAAATCATCCTTGTT
CATTTATAAACGTTTTTTATTGAAAATTCTTTCTCAGCTAGAACCACG
Run BLAST on NCBI

transcript from alignment at sc0000215:341838..348438-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015693 ID=TCONS_00015693|Name=TCONS_00015693|organism=Clytia hemisphaerica|type=transcript|length=6601bp|location=Sequence derived from alignment at sc0000215:341838..348438- (Clytia hemisphaerica)
TTTTTATACTGTAAATATTGACCGTTTTATTTCAATCACATATCTTAAAA CGATTTTATTCATGGAAAAAGGTTTTGAGAGCTAAAAACTATTTTAAGAC ACAAATTTTTAGCTATATGTAGTTTTGCTGAAACATAATGTGATGTTTAA TGTGCGTTTTTTTGTCTTAAATTATATTTTAAAGTTTTTACTGTTTATAT ACGTAAAAAGAGAAATGCTGAGATTATCAACCACAAAAGTATGATAGGTA TTTTTAATTGGAATGCCTTCAATAATTTTTAAACTGTTTTTCCATTTAGA CTTGTCTGAAGGCTAGTATATACTATCATGTAGAGAACATACTCGACTTG GTTTTTGGAAGGCTCCCTCAACAGATGGAATGACTAAAAAGGAGAAGGCA ATCGAAAATATCGATGCCTTCACACATTTTGTAGCTGGTTGGGTCTCAGG TACTTATACTTATACACTTTTGGAGATCAAGAAATTAATGATGAAAAAAA AATTATATTATTAGACTTTGTTTACACCTCTGTATCAAAGGCAGCTAATT TCGTGACTTGAAGTCGACCAATAGAAATTTGTTTTCGTTTTAAAACAATT TGGAACGTGTGACTACTGTTTCAGCAATTGNTTTTAACCAAATTGAAATT TGTTTTCGTTTTAATACAATTTGGAGCGTGTGACTACTGTTTCAGCAATT GCTATTATTCATCATAAGTAGGTCTATTAAGCCAAGTAGTCTGTCTGCCT GCCTATAATAGAGCTATTCTAGGTTTGATACCCTATTTTTACTAATTTGA AAATTTGCAGGCAGGCAGACTACTTGGCTTAATAGACCTACTTATGATAG TTATAATTATCACTATTAATTATAGATACTTATGATAGGTCAAGACCTAC AATTTGCTTAAAATTTTACACTAAGATTTATTTTAAAGAGGACTTTGCAC CTTTGGATGATAATCAGAGAGTAAATCCAATATTTTGTTGTCACAGGTTG TGCGGGCGTGTTGGTGAGTCATCCTTTGGACACAGTGAAAGTTCGTTTAC AAACGCAAGGCGTATCTGCAATACAACAACAGTATCGGGGTACATGGCAT TGTCTATCTGAAACCATCAAAAATGAAAAGGTAGTTCTCATCATTCTTCA CTTCGATTATGTAAAAACTTTTTTTCTGATTGCATTCAAAAATAGAACCC CAAAAAGTGAGGTTTTCAATCACAGCCACTTTTTAGCCCACAACGTTGAT ATTCTTGTGGCTGCTGTGTAGTACAAAATTCTATAAAATAAGGAAATTGA CGAGCTTTCCAAAAATGTGGCTCCCTTTGAAGTTGAGTGATTCAGTCTTG AAATATAAGATGGCAAAGTGAGGGCAGGTTTTGTGGCNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNATTTTGGTTCCATTTTTGATATTTTGTGGATAAACCCT TTTGCTACGAGTTTCATCTGACTGAAAAATATGCATTCCTCTTGTTGTAT TTTTCTTGGGCTAAATTAAAGCCCCTTTTGTACTTTCTACTCATTCTGTT TAGGTTTATGGGTTGTTCAAAGGTATGTCGTCACCGCTCCTGGGAACTGC TCTTTGGAATGCTGTTATCTTCGGTACCTATGGCAACACCATACGCTGGT TGGCTGGTGATAGCCTAGAAGAACAGCATCGGATGAGTAATGTTGTAATC GCTAGTCTAGCGTCAGGTTTCACTCAAACTTTTGTTATTACACCTCTGGA GCTCACCAAAACGAGGCTACAAATTCAAACATCGCAGAAAAATCAAGTTT ATAAAGGTTACTTTTTATTGAATTATGGACACTTTAATTTGTTGACAATT TTTATGTAGTCTTTTTGCTATATTAAAAAGCTATATATCATATGCCATTG GAAAGATTTCCCAGAAGATAGAATGATATAAAAGATTAAAGAATTTTGCA AAGTTGACAAATGAAGAAGAAAAGGGAAGATGAAAAAATGAAGTTTTTTC CTATTTTTCTACTGGTACCAAAATCATTACATCAGACCTTTCAGAATTAT TGAACCGTGCTGATTTCAAATCCGTATTTCTTGTATCTTCCTTAGATAAA AAGTTACAGCCCTATGAAGTAGGCCTAAAACGGACAAAAATGACCAAAAA TTAACACATTTTACAGTGCTGTTTTTTATTTGTGTTTTTTATTATTTTCA GGTTTGATTGATTGTTGTCGACAGATCTATCGCCAACAAGGTTTTTTCGG ACTCTTCAAAGGGTTCAATGCAACGTTCATTCGAGATGCAATCGGTTTCA CTGCGTTCTTTGGAATTTTCGAACAATTTTCACGATGGATATCTAAAGAA GGGCCACCGTATCGTGATATTACCATAGTTGGGCACGTTGTGGCCGGAGG GCTTACGGGTGCCATATCATGGGGATGCGCTTTTCCCGCTGACGTCATCA AATGTCGGATTCAAGTAGATTACGAGGGGCGATATAACGGTTTTATTGAC TGTGTTCGCAAATCTTATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGG TTTTTGGCCCTGTGTTTTGAGAGGGTTTCCAATGAACGCAGCAATCTTTA GTATTTATCATTATATGATCCGTGTTTATGAAGACCACGATATGGCAGAT AGGATTGTAACAAAGTTTTTGTACGTGGATTGATTGAATGCAATAGTGTG ACCTTTTTGAATGTTAACTTCATGTTCATGCATACGCAATACATCTTCGA AAACTTTTAAGGCCTGGATCCGCCATAACTACTGAAACACCCCTGTATCA CAGACTGGAAAATGAACTTTGATTTCATATCCCAAAATTCATTTCAAAAT TCAATTGGACGAAAACTTGCATTCCGAAACCATCCCCACTGGAACAATAG AATTTCTATCCTCATTGGGATTTCGATATAAATTTTTATCCCCACTGAGG GAAAACTTCCACCGGGTCTGTGAGACAGGGATGAAATGAGAGGCCCTCAG ACTTATCATAACTTGAAATATTAAATAAGCAAGTTAGACGTCGAAAAGTG AATCCATTTCTTAAAATTTGTTCATTTTAATTTGAATACATCTTTTGGAC GTATATCAAGAAAATTCCTTTCGTCCCGCTCGTATTAATTGGAGTCGTTT ACGTACAAGAAACTACTGTTGAATTTTAACTAAATATTTTTAATATATAC TTTAGATAGGAAAACACAAAAATTATATAATATTTTTTACAAATCATCCT TGTTCATTTATAAACGTTTTTTATTGAAAATTCTTTCTCAGCTAGAACCA CGACAAATATTTTTCTTTATATACTTTTCCGTGTCTTCTTTGGTTCGAAA GACCAGGAAAGTATGAACCAATGTTTATCCCACGGCTGCTAGACCTGTCA AAATTTTGAAAATCGCTCACTCACTATGGTAAGAAAGGTCCGAATTTTAT AGGTGCCAATTTTTTTTTTTCGGACACCAGTTTATTTTACTTTGAAATTT CGTTCAGTGATAGGCTAATAGGAAGCACAAACTCAATAGTTGATGCCAAT AGTTTATTGTCGCCTTGAAAATATATTTTATCTGCGTGTTTGCGGCTTTT GTTTGATATTCAGAAAACTCCCACTCTCTTATCCTATCACCCGCAACAAA TTACTTTCATCTTTTCGAAAATAAACACATAATTCTCTTGCGGTATATAC ACCATCAACACTAACGGTCAATATTCTGTTTTGGTTTTTCTGGTTCGCTG AAAACCCACACTTGACTATAATTGCGATTCGCCCATTAAAATATCATTAA AATATCATTAAATTGTTCAGAGTCCTTAGGAAGGTTCTGTGGTAAGTGTT GTGGTTTCAATAGCGTCAACATCAAAAAGACTTTAAGAAAGGTATATTAA TGAAAACATAAACACACCTTCACACAAACATATTTTTCAGTAACAGAGTT TTTACAAAAGTGACGAAGTTTTCCACGACGAAAAATCTTACTGGTCAACT TCAAGGGGAGTTACGTCAAAAGAAATTTTCACTACAGTATATGGCCCCCA AAACGGAGACGGGCCCAAAAACGGAGGTCGTCGTTAAAATGAGGATTCTG ACTTGTAGATTTATCAGATTTAAACGATTTTTGTTTCTTTTGAAAGAATG ATGGTTATACTAAAAAATTTTTGAGACAGATTCAAAATAACATATTTGCG TCTGAAGGAGATATTTTAACACCAAAATTAGATAAAAATTGCATATAACT CACTCTAGCTCCTTGGATATTGAAAATAAGTTATGAAAATGGGGNAATCG CTAGTCTAGCGTCAGGTTTCACTCAAACTTTTGTTATTACACCTCTGGAG CTCACCAAAACGAGGCTACAAATTCAAACATCGCAGAAAAATCAAGTTTA TAAAGGTTACTTTTTATTGAATTATGGACACTTTAATTTGTTGACAATTT TTATGTAGTCTTTTTGCTATATTAAAAAGCTATATATCATATGCCATTGG AAAGATTTCCCAGAAGATAGAATGATATAAAAGATTAAAGAATTTTGCAA AGTTGACAAATGAAGAAGAAAAGGGAAGATGAAAAAATGAAGTTTTTTCC TATTTTTCTACTGGTACCAAAATCATTACATCAGACCTTTCAGAATTATT GAACCGTGCTGATTTCAAATCCGTATTTCTTGTATCTTCCTTAGATAAAA AGTTACAGCCCTATGAAGTAGGCCTAAAACGGACAAAAATGACCAAAAAT TAACACATTTTACAGTGCTGTTTTTTATTTGTGTTTTTTATTATTTTCAG GTTTGATTGATTGTTGTCGACAGATCTATCGCCAACAAGGTTTTTTCGGA CTCTTCAAAGGGTTCAATGCAACGTTCATTCGAGATGCCATCGGTTTCAC TGCGTTCTTTGGAATTTTCGAACAATTTTCACGATGGATATCTAAAGAAG GGCCACCGTATCGTGATATTACCATAGTTGGGCACGTTGTGGCCGGAGGG CTTACGGGGGCCATATCATGGGGATGCGCTTTTCCCGCTGACGTCATCAA ATGTCGGATTCAAGTAGATTACGAGGGGCGATATAACGGTTTTATTGACT GTGTTCGCAAATCTTATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGGT TTTTGGCCCTGTGTTTTGAGAGGGTTTCCAATGAACGCAGCAATCTTTAG TATTTATCATTATATGATCCGTGTTTATGAAGACCACGATATGGCAGATA GGATTGTAACAAAGTTTTTGTACGTGGATTGATTGAATGCAATAGTGTGA TGTTTTTGAATGTTAACTTCATGTTCATGCATACGCAATACATCTTCGAA AACTTTTAAGGCCTGGATCCGCCATAACTACTGAAACACCCCTGTATCAC AGACTGGAAAATGAACTTTGATTTCATATCCCAAAATTCATTTCAAAATT CAATTGGACGAAAACTTGCATTCCGAAACCATCCCCACTGGAACAATAGA ATTTCTATCCTCATTGGGATTTCGATATAAATTTTTATCCCCACTGAGGG AAAACTTCCACCGGGTCTGTGAGACAGGGATGAAATGAGAGGCCCTCAGA CTTATCATAACTTGAAATATTAAATAAGCAAGTTAGACGTCGAAAAGTGA ATCCATTTCTTAAAATTTGTTCATTTTAATTTGAATACATCTTTTGGACG TATATCAAGAAAATTCCTTTCGTCCCGCTCGTATTAATTGGAGTCGTTTA CGTACAAGAAACTACTGTTGAATTTTAACTAAATATTTTTAATATATACT TTAGATAGGAAAACACAAAAATTATATAATATTTTTTACAAATCATCCTT GTTCATTTATAAACGTTTTTTATTGAAAATTCTTTCTCAGCTAGAACCAC G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008756XLOC_008756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015693-exon-sc0000215-1575043694:348429..348438TCONS_00015693-exon-sc0000215-1575043694:348429..348438Clytia hemisphaericaexon
TCONS_00015693-exon-sc0000215-1575043694:347990..348139TCONS_00015693-exon-sc0000215-1575043694:347990..348139Clytia hemisphaericaexon
TCONS_00015693-exon-sc0000215-1575043694:347309..347442TCONS_00015693-exon-sc0000215-1575043694:347309..347442Clytia hemisphaericaexon
TCONS_00015693-exon-sc0000215-1575043694:345933..346185TCONS_00015693-exon-sc0000215-1575043694:345933..346185Clytia hemisphaericaexon
TCONS_00015693-exon-sc0000215-1575043694:341838..342938TCONS_00015693-exon-sc0000215-1575043694:341838..342938Clytia hemisphaericaexon
TCONS_00015693-exon-sc0000215-1510915933:348429..348438TCONS_00015693-exon-sc0000215-1510915933:348429..348438Clytia hemisphaericaexon
TCONS_00015693-exon-sc0000215-1510915933:347990..348139TCONS_00015693-exon-sc0000215-1510915933:347990..348139Clytia hemisphaericaexon
TCONS_00015693-exon-sc0000215-1510915933:347309..347442TCONS_00015693-exon-sc0000215-1510915933:347309..347442Clytia hemisphaericaexon
TCONS_00015693-exon-sc0000215-1510915933:345933..346185TCONS_00015693-exon-sc0000215-1510915933:345933..346185Clytia hemisphaericaexon
TCONS_00015693-exon-sc0000215-1510915933:341838..342938TCONS_00015693-exon-sc0000215-1510915933:341838..342938Clytia hemisphaericaexon
TCONS_00015693-exon-sc0000215-1491911889:348429..348438TCONS_00015693-exon-sc0000215-1491911889:348429..348438Clytia hemisphaericaexon
TCONS_00015693-exon-sc0000215-1491911889:347990..348139TCONS_00015693-exon-sc0000215-1491911889:347990..348139Clytia hemisphaericaexon
TCONS_00015693-exon-sc0000215-1491911889:347309..347442TCONS_00015693-exon-sc0000215-1491911889:347309..347442Clytia hemisphaericaexon
TCONS_00015693-exon-sc0000215-1491911889:345933..346185TCONS_00015693-exon-sc0000215-1491911889:345933..346185Clytia hemisphaericaexon
TCONS_00015693-exon-sc0000215-1491911889:341838..342938TCONS_00015693-exon-sc0000215-1491911889:341838..342938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:341838..348438 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 1.14517e-05 3.7343e-07 0.000180241 0 1.33183e-07 0.44655 0 0.000510653 0 0 0 1.01339e-09 0.0305985 1.82062e-08 0 0.0194604 0 5.40707e-08 2.02025e-08 9.44358e-07 0 0 0.0577856 0 0 0
Blast
BLAST of TCONS_00015693 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 2.775e-67
Identity = 117/273 (42.86%), Postives = 160/273 (58.61%), Query Frame = 1
Query:  139 FVAGWVSGCAGVLVSHPLDTVKVRLQTQGVSAIQQQYRGTWHCLSETIKNEKVYGLFKGMSSPLLGTALWNAVIFGTYGNTIRWLAGDSLEEQHRMSNVVIASLASGFTQTFVITPLELTKTRLQIQTSQKNQVYKGLIDCCRQIYRQQGFFGLFKGFNATFIRDAIGFTAFFGIFEQFSRWISKEGPPYRDITIVGHVVAGGLTGAISWGCAFPADVIKCRIQVD---YEGRYNGFIDCVRKSYKEEGPALFRRGFWPCVLRGFPMNAAIFS 948
            F+AG   G AGVLV HP DTVKVRLQ Q V   + QYRGT HC    IK E V GL+KG+ SPL+G    NA++FG  GNT+R L  DS   Q       +A  A+G  Q  +  P+EL KTRLQ+Q +   + YKG +DC  QIY  +G  G+ +G  +T +R+   F  +F  ++  +R +  E  P   + +   ++AGG +G +SW   +P DV+K R+Q D      RY G +DCV +SY+ EG  +F RG    +LR FP+NAA F+
Sbjct:    5 FLAGCAGGVAGVLVGHPFDTVKVRLQVQSVE--KPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQF------LAGAAAGAIQCVICCPMELAKTRLQLQDAGPARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCE--PGDRLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFPVNAATFA 267          
The following BLAST results are available for this feature:
BLAST of TCONS_00015693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCATL2.775e-6742.86Mitochondrial basic amino acids transporter OS=Hom... [more]
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