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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015691 ID=TCONS_00015691|Name=TCONS_00015691|organism=Clytia hemisphaerica|type=transcript|length=1686bp GTTTTATTTCAATCACATATCTTAAAACGATTTTATTCATGGAAAAAGAC TTGTCTGAAGGCTAGTATATACTATCATGTAGAGAACATACTCGACTTGG TTTTTGGAAGGCTCCCTCAACAGATGGAATGACTAAAAAGGAGAAGGCAA TCGAAAATATCGATGCCTTCACACATTTTGTAGCTGGTTGGGTCTCAGGT TGTGCGGGCGTGTTGGTGAGTCATCCTTTGGACACAGTGAAAGTTCGTTT ACAAACGCAAGGCGTATCTGCAATACAACAACAGTATCGGGGTACATGGC ATTGTCTATCTGAAAccatcaaaaatgaaaagGTTTATGGGTTGTTCAAA GGTATGTCGTCACCGCTCCTGGGAACTGCTCTTTGGAATGCTGTTATCTT CGGTACCTATGGCAACACCATACGCTGGTTGGCTGGTGATAGCCTAGAAG AACAGCATCGGATGAGTAATGTTGTAATCGCTAGTCTAGCGTCAGGTTTC ACTCAAACTTTTGTTATTACACCTCTGGAgctcaccaaaacgaggctaca AATTCAAACATCGcagaaaaatcaagtttataAAGgtttgattgattgtt gtCGACAGATCTATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGGGTTC AATGCAACGTTCATTCGAGATGCCATCGGTTTCACTGCGTTCTTTGGAAT TTTCGAACAATTTTCACGATGGATATCTAAAGAAGGGCCACCGTATCGTG ATATTACCATAGTTGGGCACGTTGTGGCCGGAGGGCTTACGGGGGCCATA TCATGGGGATGCGCTTTTCccgctgacgtcatcaaatgtCGGATTCAAGT AGATTACGAGGGGCGATATAACGGTTTTATTGACTGTGTTCGCAAATCTT ATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTGTGTT TTGAGAGGGTTTCCAATGAACGCAGCAATCTTTAGTATTTATCATTATAT GATCCGTGTTTATGAAGACCACGATATGGCAGATAGGATTGTAACAAAGT TTTTGTACGTGGATTGATTGAATGCAATAGTGTGATGTTTTTGAATGTTA ACTTCATGTTCATGCATACGCAATACATCTTCGAAAACTTTTAAGGCCTG GATCCGCCATAACTACTGAAACACCCCTGTATCACAGACTGGAAAATGAA CTTTGATTTCATATCCCAAAATTCATTTCAAAATTCAATTGGACGAAAAC TTGCATTCCGAAACCATCCCCACTGGAACAATAGAATTTCTATCCTCATT GGGATTTCGATATAAATTTTTATCCCCACTGAGGGAAAACTTCCACCGGG TCTGTGAGACAGGGATGAAATGAGAGGCCCTCAGACTTATCATAACTTGA AATATTAAATAAGCAAGTTAGACGTCGAAAAGTGAATCCATTTCTTAAAA TTTGTTCATTTTAATTTGAATACATCTTTTGGACGTATATCAAGAAAATT CCTTTCGTCCCGCTCGTATTAATTGGAGTCGTTTACGTACAAGAAACTAC TGTTGAATTTTAACTAAATATTTTTAATATATACTTTAGATAGGAAAACA CAAAAATTATATAATATTTTTTACAAATCATCCTTGTTCATTTATAAACG TTTTTTATTGAAAATTCTTTCTCAGCTAGAACCACG Run BLAST on NCBI transcript from alignment at sc0000215:341838..348415- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015691 ID=TCONS_00015691|Name=TCONS_00015691|organism=Clytia hemisphaerica|type=transcript|length=6578bp|location=Sequence derived from alignment at sc0000215:341838..348415- (Clytia hemisphaerica) GTTTTATTTCAATCACATATCTTAAAACGATTTTATTCATGGAAAAAGGT
TTTGAGAGCTAAAAACTATTTTAAGACACAAATTTTTAGCTATATGTAGT
TTTGCTGAAACATAATGTGATGTTTAATGTGCGTTTTTTTGTCTTAAATT
ATATTTTAAAGTTTTTACTGTTTATATACGTAAAAAGAGAAATGCTGAGA
TTATCAACCACAAAAGTATGATAGGTATTTTTAATTGGAATGCCTTCAAT
AATTTTTAAACTGTTTTTCCATTTAGACTTGTCTGAAGGCTAGTATATAC
TATCATGTAGAGAACATACTCGACTTGGTTTTTGGAAGGCTCCCTCAACA
GATGGAATGACTAAAAAGGAGAAGGCAATCGAAAATATCGATGCCTTCAC
ACATTTTGTAGCTGGTTGGGTCTCAGGTACTTATACTTATACACTTTTGG
AGATCAAGAAATTAATGATGAAAAAAAAATTATATTATTAGACTTTGTTT
ACACCTCTGTATCAAAGGCAGCTAATTTCGTGACTTGAAGTCGACCAATA
GAAATTTGTTTTCGTTTTAAAACAATTTGGAACGTGTGACTACTGTTTCA
GCAATTGNTTTTAACCAAATTGAAATTTGTTTTCGTTTTAATACAATTTG
GAGCGTGTGACTACTGTTTCAGCAATTGCTATTATTCATCATAAGTAGGT
CTATTAAGCCAAGTAGTCTGTCTGCCTGCCTATAATAGAGCTATTCTAGG
TTTGATACCCTATTTTTACTAATTTGAAAATTTGCAGGCAGGCAGACTAC
TTGGCTTAATAGACCTACTTATGATAGTTATAATTATCACTATTAATTAT
AGATACTTATGATAGGTCAAGACCTACAATTTGCTTAAAATTTTACACTA
AGATTTATTTTAAAGAGGACTTTGCACCTTTGGATGATAATCAGAGAGTA
AATCCAATATTTTGTTGTCACAGGTTGTGCGGGCGTGTTGGTGAGTCATC
CTTTGGACACAGTGAAAGTTCGTTTACAAACGCAAGGCGTATCTGCAATA
CAACAACAGTATCGGGGTACATGGCATTGTCTATCTGAAACCATCAAAAA
TGAAAAGGTAGTTCTCATCATTCTTCACTTCGATTATGTAAAAACTTTTT
TTCTGATTGCATTCAAAAATAGAACCCCAAAAAGTGAGGTTTTCAATCAC
AGCCACTTTTTAGCCCACAACGTTGATATTCTTGTGGCTGCTGTGTAGTA
CAAAATTCTATAAAATAAGGAAATTGACGAGCTTTCCAAAAATGTGGCTC
CCTTTGAAGTTGAGTGATTCAGTCTTGAAATATAAGATGGCAAAGTGAGG
GCAGGTTTTGTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGGTTCC
ATTTTTGATATTTTGTGGATAAACCCTTTTGCTACGAGTTTCATCTGACT
GAAAAATATGCATTCCTCTTGTTGTATTTTTCTTGGGCTAAATTAAAGCC
CCTTTTGTACTTTCTACTCATTCTGTTTAGGTTTATGGGTTGTTCAAAGG
TATGTCGTCACCGCTCCTGGGAACTGCTCTTTGGAATGCTGTTATCTTCG
GTACCTATGGCAACACCATACGCTGGTTGGCTGGTGATAGCCTAGAAGAA
CAGCATCGGATGAGTAATGTTGTAATCGCTAGTCTAGCGTCAGGTTTCAC
TCAAACTTTTGTTATTACACCTCTGGAGCTCACCAAAACGAGGCTACAAA
TTCAAACATCGCAGAAAAATCAAGTTTATAAAGGTTACTTTTTATTGAAT
TATGGACACTTTAATTTGTTGACAATTTTTATGTAGTCTTTTTGCTATAT
TAAAAAGCTATATATCATATGCCATTGGAAAGATTTCCCAGAAGATAGAA
TGATATAAAAGATTAAAGAATTTTGCAAAGTTGACAAATGAAGAAGAAAA
GGGAAGATGAAAAAATGAAGTTTTTTCCTATTTTTCTACTGGTACCAAAA
TCATTACATCAGACCTTTCAGAATTATTGAACCGTGCTGATTTCAAATCC
GTATTTCTTGTATCTTCCTTAGATAAAAAGTTACAGCCCTATGAAGTAGG
CCTAAAACGGACAAAAATGACCAAAAATTAACACATTTTACAGTGCTGTT
TTTTATTTGTGTTTTTTATTATTTTCAGGTTTGATTGATTGTTGTCGACA
GATCTATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGGGTTCAATGCAA
CGTTCATTCGAGATGCAATCGGTTTCACTGCGTTCTTTGGAATTTTCGAA
CAATTTTCACGATGGATATCTAAAGAAGGGCCACCGTATCGTGATATTAC
CATAGTTGGGCACGTTGTGGCCGGAGGGCTTACGGGTGCCATATCATGGG
GATGCGCTTTTCCCGCTGACGTCATCAAATGTCGGATTCAAGTAGATTAC
GAGGGGCGATATAACGGTTTTATTGACTGTGTTCGCAAATCTTATAAAGA
GGAAGGTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTGTGTTTTGAGAG
GGTTTCCAATGAACGCAGCAATCTTTAGTATTTATCATTATATGATCCGT
GTTTATGAAGACCACGATATGGCAGATAGGATTGTAACAAAGTTTTTGTA
CGTGGATTGATTGAATGCAATAGTGTGACCTTTTTGAATGTTAACTTCAT
GTTCATGCATACGCAATACATCTTCGAAAACTTTTAAGGCCTGGATCCGC
CATAACTACTGAAACACCCCTGTATCACAGACTGGAAAATGAACTTTGAT
TTCATATCCCAAAATTCATTTCAAAATTCAATTGGACGAAAACTTGCATT
CCGAAACCATCCCCACTGGAACAATAGAATTTCTATCCTCATTGGGATTT
CGATATAAATTTTTATCCCCACTGAGGGAAAACTTCCACCGGGTCTGTGA
GACAGGGATGAAATGAGAGGCCCTCAGACTTATCATAACTTGAAATATTA
AATAAGCAAGTTAGACGTCGAAAAGTGAATCCATTTCTTAAAATTTGTTC
ATTTTAATTTGAATACATCTTTTGGACGTATATCAAGAAAATTCCTTTCG
TCCCGCTCGTATTAATTGGAGTCGTTTACGTACAAGAAACTACTGTTGAA
TTTTAACTAAATATTTTTAATATATACTTTAGATAGGAAAACACAAAAAT
TATATAATATTTTTTACAAATCATCCTTGTTCATTTATAAACGTTTTTTA
TTGAAAATTCTTTCTCAGCTAGAACCACGACAAATATTTTTCTTTATATA
CTTTTCCGTGTCTTCTTTGGTTCGAAAGACCAGGAAAGTATGAACCAATG
TTTATCCCACGGCTGCTAGACCTGTCAAAATTTTGAAAATCGCTCACTCA
CTATGGTAAGAAAGGTCCGAATTTTATAGGTGCCAATTTTTTTTTTTCGG
ACACCAGTTTATTTTACTTTGAAATTTCGTTCAGTGATAGGCTAATAGGA
AGCACAAACTCAATAGTTGATGCCAATAGTTTATTGTCGCCTTGAAAATA
TATTTTATCTGCGTGTTTGCGGCTTTTGTTTGATATTCAGAAAACTCCCA
CTCTCTTATCCTATCACCCGCAACAAATTACTTTCATCTTTTCGAAAATA
AACACATAATTCTCTTGCGGTATATACACCATCAACACTAACGGTCAATA
TTCTGTTTTGGTTTTTCTGGTTCGCTGAAAACCCACACTTGACTATAATT
GCGATTCGCCCATTAAAATATCATTAAAATATCATTAAATTGTTCAGAGT
CCTTAGGAAGGTTCTGTGGTAAGTGTTGTGGTTTCAATAGCGTCAACATC
AAAAAGACTTTAAGAAAGGTATATTAATGAAAACATAAACACACCTTCAC
ACAAACATATTTTTCAGTAACAGAGTTTTTACAAAAGTGACGAAGTTTTC
CACGACGAAAAATCTTACTGGTCAACTTCAAGGGGAGTTACGTCAAAAGA
AATTTTCACTACAGTATATGGCCCCCAAAACGGAGACGGGCCCAAAAACG
GAGGTCGTCGTTAAAATGAGGATTCTGACTTGTAGATTTATCAGATTTAA
ACGATTTTTGTTTCTTTTGAAAGAATGATGGTTATACTAAAAAATTTTTG
AGACAGATTCAAAATAACATATTTGCGTCTGAAGGAGATATTTTAACACC
AAAATTAGATAAAAATTGCATATAACTCACTCTAGCTCCTTGGATATTGA
AAATAAGTTATGAAAATGGGGNAATCGCTAGTCTAGCGTCAGGTTTCACT
CAAACTTTTGTTATTACACCTCTGGAGCTCACCAAAACGAGGCTACAAAT
TCAAACATCGCAGAAAAATCAAGTTTATAAAGGTTACTTTTTATTGAATT
ATGGACACTTTAATTTGTTGACAATTTTTATGTAGTCTTTTTGCTATATT
AAAAAGCTATATATCATATGCCATTGGAAAGATTTCCCAGAAGATAGAAT
GATATAAAAGATTAAAGAATTTTGCAAAGTTGACAAATGAAGAAGAAAAG
GGAAGATGAAAAAATGAAGTTTTTTCCTATTTTTCTACTGGTACCAAAAT
CATTACATCAGACCTTTCAGAATTATTGAACCGTGCTGATTTCAAATCCG
TATTTCTTGTATCTTCCTTAGATAAAAAGTTACAGCCCTATGAAGTAGGC
CTAAAACGGACAAAAATGACCAAAAATTAACACATTTTACAGTGCTGTTT
TTTATTTGTGTTTTTTATTATTTTCAGGTTTGATTGATTGTTGTCGACAG
ATCTATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGGGTTCAATGCAAC
GTTCATTCGAGATGCCATCGGTTTCACTGCGTTCTTTGGAATTTTCGAAC
AATTTTCACGATGGATATCTAAAGAAGGGCCACCGTATCGTGATATTACC
ATAGTTGGGCACGTTGTGGCCGGAGGGCTTACGGGGGCCATATCATGGGG
ATGCGCTTTTCCCGCTGACGTCATCAAATGTCGGATTCAAGTAGATTACG
AGGGGCGATATAACGGTTTTATTGACTGTGTTCGCAAATCTTATAAAGAG
GAAGGTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTGTGTTTTGAGAGG
GTTTCCAATGAACGCAGCAATCTTTAGTATTTATCATTATATGATCCGTG
TTTATGAAGACCACGATATGGCAGATAGGATTGTAACAAAGTTTTTGTAC
GTGGATTGATTGAATGCAATAGTGTGATGTTTTTGAATGTTAACTTCATG
TTCATGCATACGCAATACATCTTCGAAAACTTTTAAGGCCTGGATCCGCC
ATAACTACTGAAACACCCCTGTATCACAGACTGGAAAATGAACTTTGATT
TCATATCCCAAAATTCATTTCAAAATTCAATTGGACGAAAACTTGCATTC
CGAAACCATCCCCACTGGAACAATAGAATTTCTATCCTCATTGGGATTTC
GATATAAATTTTTATCCCCACTGAGGGAAAACTTCCACCGGGTCTGTGAG
ACAGGGATGAAATGAGAGGCCCTCAGACTTATCATAACTTGAAATATTAA
ATAAGCAAGTTAGACGTCGAAAAGTGAATCCATTTCTTAAAATTTGTTCA
TTTTAATTTGAATACATCTTTTGGACGTATATCAAGAAAATTCCTTTCGT
CCCGCTCGTATTAATTGGAGTCGTTTACGTACAAGAAACTACTGTTGAAT
TTTAACTAAATATTTTTAATATATACTTTAGATAGGAAAACACAAAAATT
ATATAATATTTTTTACAAATCATCCTTGTTCATTTATAAACGTTTTTTAT
TGAAAATTCTTTCTCAGCTAGAACCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00015691-exon-sc0000215-1575043694:348368..348415 | TCONS_00015691-exon-sc0000215-1575043694:348368..348415 | Clytia hemisphaerica | exon |
| TCONS_00015691-exon-sc0000215-1575043694:347990..348139 | TCONS_00015691-exon-sc0000215-1575043694:347990..348139 | Clytia hemisphaerica | exon |
| TCONS_00015691-exon-sc0000215-1575043694:347309..347442 | TCONS_00015691-exon-sc0000215-1575043694:347309..347442 | Clytia hemisphaerica | exon |
| TCONS_00015691-exon-sc0000215-1575043694:345933..346185 | TCONS_00015691-exon-sc0000215-1575043694:345933..346185 | Clytia hemisphaerica | exon |
| TCONS_00015691-exon-sc0000215-1575043694:341838..342938 | TCONS_00015691-exon-sc0000215-1575043694:341838..342938 | Clytia hemisphaerica | exon |
| TCONS_00015691-exon-sc0000215-1510915933:348368..348415 | TCONS_00015691-exon-sc0000215-1510915933:348368..348415 | Clytia hemisphaerica | exon |
| TCONS_00015691-exon-sc0000215-1510915933:347990..348139 | TCONS_00015691-exon-sc0000215-1510915933:347990..348139 | Clytia hemisphaerica | exon |
| TCONS_00015691-exon-sc0000215-1510915933:347309..347442 | TCONS_00015691-exon-sc0000215-1510915933:347309..347442 | Clytia hemisphaerica | exon |
| TCONS_00015691-exon-sc0000215-1510915933:345933..346185 | TCONS_00015691-exon-sc0000215-1510915933:345933..346185 | Clytia hemisphaerica | exon |
| TCONS_00015691-exon-sc0000215-1510915933:341838..342938 | TCONS_00015691-exon-sc0000215-1510915933:341838..342938 | Clytia hemisphaerica | exon |
| TCONS_00015691-exon-sc0000215-1491911889:348368..348415 | TCONS_00015691-exon-sc0000215-1491911889:348368..348415 | Clytia hemisphaerica | exon |
| TCONS_00015691-exon-sc0000215-1491911889:347990..348139 | TCONS_00015691-exon-sc0000215-1491911889:347990..348139 | Clytia hemisphaerica | exon |
| TCONS_00015691-exon-sc0000215-1491911889:347309..347442 | TCONS_00015691-exon-sc0000215-1491911889:347309..347442 | Clytia hemisphaerica | exon |
| TCONS_00015691-exon-sc0000215-1491911889:345933..346185 | TCONS_00015691-exon-sc0000215-1491911889:345933..346185 | Clytia hemisphaerica | exon |
| TCONS_00015691-exon-sc0000215-1491911889:341838..342938 | TCONS_00015691-exon-sc0000215-1491911889:341838..342938 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000215 | supercontig | sc0000215:341838..348415 - |
Blast
BLAST of TCONS_00015691 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2) HSP 1 Score: 223.016 bits (567), Expect = 3.582e-67 Identity = 117/273 (42.86%), Postives = 160/273 (58.61%), Query Frame = 3
Query: 177 FVAGWVSGCAGVLVSHPLDTVKVRLQTQGVSAIQQQYRGTWHCLSETIKNEKVYGLFKGMSSPLLGTALWNAVIFGTYGNTIRWLAGDSLEEQHRMSNVVIASLASGFTQTFVITPLELTKTRLQIQTSQKNQVYKGLIDCCRQIYRQQGFFGLFKGFNATFIRDAIGFTAFFGIFEQFSRWISKEGPPYRDITIVGHVVAGGLTGAISWGCAFPADVIKCRIQVD---YEGRYNGFIDCVRKSYKEEGPALFRRGFWPCVLRGFPMNAAIFS 986
F+AG G AGVLV HP DTVKVRLQ Q V + QYRGT HC IK E V GL+KG+ SPL+G NA++FG GNT+R L DS Q +A A+G Q + P+EL KTRLQ+Q + + YKG +DC QIY +G G+ +G +T +R+ F +F ++ +R + E P + + ++AGG +G +SW +P DV+K R+Q D RY G +DCV +SY+ EG +F RG +LR FP+NAA F+
Sbjct: 5 FLAGCAGGVAGVLVGHPFDTVKVRLQVQSVE--KPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQF------LAGAAAGAIQCVICCPMELAKTRLQLQDAGPARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCE--PGDRLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFPVNAATFA 267
The following BLAST results are available for this feature:
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