TCONS_00015675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015675
Unique NameTCONS_00015675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015675 ID=TCONS_00015675|Name=TCONS_00015675|organism=Clytia hemisphaerica|type=transcript|length=860bp
gcgccactctttctccctggatttctccacttacccttgatccttctctt
aattgctgagcatcaagcagagaggcatcaagtaccattttgagcaTCTT
TGGCATGAcctggctgggggttgaacccacaaccttgcgagctgtagctg
gatgctctaccactgcactacagtCGCTAAAGTATTTGTATTTCTTCCCT
GTAATCCTCACTAGAAAGCAGAATTCTTATATTGATCTTCTTGCATGCCA
GTAGTTTTTTAATTCTATTAATAACAAACTCAATAGTATGAGACTTTCAT
GAGATTACACTACTTAAGTTATAATATGAAATAATGTCAATGACTTTTGT
CCATGCGTTTTCAATTTCTGTGACTCAGGAATGGttgttattttctcttt
gattTTTAGGTCACATATTCACAATGTCTTGGTGTTATTGGTTATTCATT
GTTACCATTAATTGTGACTGGATTAACATTACCAGTGCTGCATTCACTAC
CTTACATACCAAACCTTGTCAAGattcttGGAGTAGTATGGGCATGTTAT
AGTGCTGGCTCATTACTGGCAACAGAAGAACTTCAAATGAAACGTTCTCT
ATTACTTTAtcctatatttttattatatgtTTATTTCTTTTCCTTGTACA
CAGGTGCCTAGGTTACATTTCTATAGTTTTGCTGCGATTTTTTCAGGGTT
TTTAAGAATGGTATATAGTTGGGTTcgttcaaaaaaaacaaaacaggtGT
TTACAAAAGTCCAggagaaaaatttgaaagtaacTGAAACTCTCTTTGAA
TATCTTAAGAAATGACttttaagaaattttcaatcaattttatctatttt
ttaagttaaa
Run BLAST on NCBI

transcript from alignment at sc0000215:163302..164434-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015675 ID=TCONS_00015675|Name=TCONS_00015675|organism=Clytia hemisphaerica|type=transcript|length=1133bp|location=Sequence derived from alignment at sc0000215:163302..164434- (Clytia hemisphaerica)
GCGCCACTCTTTCTCCCTGGATTTCTCCACTTACCCTTGATCCTTCTCTT
AATTGCTGAGCATCAAGCAGAGAGGCATCAAGTACCATTTTGAGCATCTT
TGGCATGACCTGGCTGGGGGTTGAACCCACAACCTTGCGAGCTGTAGCTG
GATGCTCTACCACTGCACTACAGTCGCTAAAGTATTTGTATTTCTTCCCT
GTAATCCTCACTAGAAAGCAGAATTCTTATATTGATCTTCTTGCATGCCA
GTAGTTTTTTAATTCTATTAATAACAAACTCAATAGTATGAGACTTTCAT
GAGATTACACTACTTAAGTTATAATATGAAATAATGTCAATGACTTTTGT
CCATGCGTTTTCAATTTCTGTGACTCAGGAATGGTTGTTATTTTCTCTTT
GATTTTTAGGTCACATATTCACAATGTCTTGGTGTTATTGGTTATTCATT
GTTACCATTAATTGTGACTGGATTAACATTACCAGTGCTGCATTCACTAC
CTTACATACCAAACCTTGTCAAGGTTAGCTAACTTTACATCAAACAAATG
GTAGTAATTGTAATGTCACTATGAATGGCTTTCAACGTTTTGAAAAAAAA
CTGAAAAGAAAGAGGATCCTTCTTTGGCCATTTTTAGTCTTCCTAACTTC
TAGTGCAGTAGTGGTACTTTATTTTTCATTAAAATCAGGTCGGATTAATA
GAATTTGACATACAAATCAAAATCTTTTTCACCGTTCAAAATAGAATTTG
ACAATTTGATACATTTCTTTATTTTCCTTTTGGTTTTCTTTTTTAGATTC
TTGGAGTAGTATGGGCATGTTATAGTGCTGGCTCATTACTGGCAACAGAA
GAACTTCAAATGAAACGTTCTCTATTACTTTATCCTATATTTTTATTATA
TGTTTATTTCTTTTCCTTGTACACAGGTGCCTAGGTTACATTTCTATAGT
TTTGCTGCGATTTTTTCAGGGTTTTTAAGAATGGTATATAGTTGGGTTCG
TTCAAAAAAAACAAAACAGGTGTTTACAAAAGTCCAGGAGAAAAATTTGA
AAGTAACTGAAACTCTCTTTGAATATCTTAAGAAATGACTTTTAAGAAAT
TTTCAATCAATTTTATCTATTTTTTAAGTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008750XLOC_008750Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015675-exon-sc0000215-1575043694:163912..164434TCONS_00015675-exon-sc0000215-1575043694:163912..164434Clytia hemisphaericaexon
TCONS_00015675-exon-sc0000215-1575043694:163302..163638TCONS_00015675-exon-sc0000215-1575043694:163302..163638Clytia hemisphaericaexon
TCONS_00015675-exon-sc0000215-1510915933:163912..164434TCONS_00015675-exon-sc0000215-1510915933:163912..164434Clytia hemisphaericaexon
TCONS_00015675-exon-sc0000215-1510915933:163302..163638TCONS_00015675-exon-sc0000215-1510915933:163302..163638Clytia hemisphaericaexon
TCONS_00015675-exon-sc0000215-1491911889:163912..164434TCONS_00015675-exon-sc0000215-1491911889:163912..164434Clytia hemisphaericaexon
TCONS_00015675-exon-sc0000215-1491911889:163302..163638TCONS_00015675-exon-sc0000215-1491911889:163302..163638Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:163302..164434 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.572	22.7218	19.6234	20.5517	15.5261	12.1384	18.8476	20.7352	22.9584	20.2843	23.6837	19.8834	19.2774	19.348	13.764	16.216	20.4911	21.3339	17.1079	16.8577	21.535	19.2762	25.875	22.2674	10.8791	12.7765	18.2152	15.4177	18.7598	18.801
Blast
[Close]
BLAST of TCONS_00015675 vs. Swiss-Prot (Human)
Match: YIPF4 (Protein YIPF4 OS=Homo sapiens GN=YIPF4 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.549e-23
Identity = 50/82 (60.98%), Postives = 58/82 (70.73%), Query Frame = 2 
Query:  410 VTYSQCLGVIGYSLLPLIVTGLTLPVLHSLPYIPNLVKILGVVWACYSAGSLLATEELQMKRSLLLYPIFLLYVYFFSLYTG 655
            V Y Q LGVIGYSLLPLIV    L V+ S   +  L+K+ GV WA YSA SLL  EE + K+ LL+YPIFLLY+YF SLYTG
Sbjct:  162 VAYGQVLGVIGYSLLPLIVIAPVLLVVGSFEVVSTLIKLFGVFWAAYSAASLLVGEEFKTKKPLLIYPIFLLYIYFLSLYTG 243
The following BLAST results are available for this feature:
BLAST of TCONS_00015675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YIPF44.549e-2360.98Protein YIPF4 OS=Homo sapiens GN=YIPF4 PE=1 SV=1[more]
back to top