TCONS_00015673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015673
Unique NameTCONS_00015673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1148

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015673 ID=TCONS_00015673|Name=TCONS_00015673|organism=Clytia hemisphaerica|type=transcript|length=1148bp
TTCTTCATGAAATCTGTTCTCCCTAAATGATTAACATCATCAAGGTTTTT
GTttgcttcttcatttttattgtcTAGAATAACATTTGGTGTAAGTGGGA
TTGGTGGAAGAGTTTTTGATCGTCTTTGTAGAGGAGGTATTGAGGTGTCT
GATGAGAGATCAGTAGTACTTTTGGCAAGTGAGGGTGTAGGTGTTTGTTT
TGGAGAGTCAGTAACGATTGTAGTGTTAGTCTTTGTGGTTATTTGTGTAG
GTGTCTGGGTAGAGTTAATGTTGACATTGTTGACATTAGCATTGACAGCT
TTATATGCTTTGTGTGGAAAGTTGATTGTGTTTTCCTGGCAATGTTGGCA
AAGATAAAACATACCAGGAATTTGGTAAACCAAGTCTCTCAATTCCTCAT
CTTGATCAATCAAATTCATGTTCTTTAACAGATTTAGGTAACATGGTCGA
TGGACTTCTTGCCCACAGGAGCCGCATTTTAGGAGTGAACTGTCGTGTAT
TTTTACTCTTTATGACTGGTTGCACAGTTGGCATATATCTGGAAAATAGC
TTTGTATAACCACACATAATTTTTCAATGGCTTCATCTTTGTTcataaag
ttagttttttttgacAGGAAATTCAATGTTTCCATAAAAGGATCCTTTCG
ACACGATTTCagcgtttttacgttatctTTGGTTGGCTTTTCTGGATCAT
AGAGTCTGATGCAATTTCTAATTGTTTCGTTGCTGGCCTCTTCCGTTAGT
TCAGCAAGTACCTGCTTCCAACTATTGATGAGTTTGNCTGGCCTCTTCCG
CTAGTTCAGCAAGTACCTGCTTCCAACTATAGACGAGTTTGACTGATACA
ACATTCCTCATGGTGTTTGAGAGTTTTGTCGAGTCGGCATGGCTGCAAAC
AAACAGCACCAAACCAGAGACTGTGTAGGTACTTAACTCAGTCATaactt
cagccaggtttctagctccccccaacaaagtaaggcccccccccaacaat
ttagctccccccaaaaaattgccttgtgctaggtcccctaacacttaggg
aaaaacaaaaacattgttctcccgcccccatagagaagtcaataaaaaat
atatgcgagtacagtactgataaatgaaaactcaattttacttgtatt
Run BLAST on NCBI

transcript from alignment at sc0000215:100900..102143-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015673 ID=TCONS_00015673|Name=TCONS_00015673|organism=Clytia hemisphaerica|type=transcript|length=1244bp|location=Sequence derived from alignment at sc0000215:100900..102143- (Clytia hemisphaerica)
TTCTTCATGAAATCTGTTCTCCCTAAATGATTAACATCATCAAGGTTNGA
TTTTGATGTGAGCTTTGTGTTGTTCTCAATCTCTTTTAGAAATCTTTTCT
TCATGAAATCTGTTCTCCCTAAATGATTAACATCATTAAGGTTTTTGTTT
GCTTCTTCATTTTTATTGTCTAGAATAACATTTGGTGTAAGTGGGATTGG
TGGAAGAGTTTTTGATCGTCTTTGTAGAGGAGGTATTGAGGTGTCTGATG
AGAGATCAGTAGTACTTTTGGCAAGTGAGGGTGTAGGTGTTTGTTTTGGA
GAGTCAGTAACGATTGTAGTGTTAGTCTTTGTGGTTATTTGTGTAGGTGT
CTGGGTAGAGTTAATGTTGACATTGTTGACATTAGCATTGACAGCTTTAT
ATGCTTTGTGTGGAAAGTTGATTGTGTTTTCCTGGCAATGTTGGCAAAGA
TAAAACATACCAGGAATTTGGTAAACCAAGTCTCTCAATTCCTCATCTTG
ATCAATCAAATTCATGTTCTTTAACAGATTTAGGTAACATGGTCGATGGA
CTTCTTGCCCACAGGAGCCGCATTTTAGGAGTGAACTGTCGTGTATTTTT
ACTCTTTATGACTGGTTGCACAGTTGGCATATATCTGGAAAATAGCTTTG
TATAACCACACATAATTTTTCAATGGCTTCATCTTTGTTCATAAAGTTAG
TTTTTTTTGACAGGAAATTCAATGTTTCCATAAAAGGATCCTTTCGACAC
GATTTCAGCGTTTTTACGTTATCTTTGGTTGGCTTTTCTGGATCATAGAG
TCTGATGCAATTTCTAATTGTTTCGTTGCTGGCCTCTTCCGTTAGTTCAG
CAAGTACCTGCTTCCAACTATTGATGAGTTTGNCTGGCCTCTTCCGCTAG
TTCAGCAAGTACCTGCTTCCAACTATAGACGAGTTTGACTGATACAACAT
TCCTCATGGTGTTTGAGAGTTTTGTCGAGTCGGCATGGCTGCAAACAAAC
AGCACCAAACCAGAGACTGTGTAGGTACTTAACTCAGTCATAACTTCAGC
CAGGTTTCTAGCTCCCCCCAACAAAGTAAGGCCCCCCCCCAACAATTTAG
CTCCCCCCAAAAAATTGCCTTGTGCTAGGTCCCCTAACACTTAGGGAAAA
ACAAAAACATTGTTCTCCCGCCCCCATAGAGAAGTCAATAAAAAATATAT
GCGAGTACAGTACTGATAAATGAAAACTCAATTTTACTTGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008748XLOC_008748Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015673-exon-sc0000215-1575043694:102100..102143TCONS_00015673-exon-sc0000215-1575043694:102100..102143Clytia hemisphaericaexon
TCONS_00015673-exon-sc0000215-1575043694:100900..102003TCONS_00015673-exon-sc0000215-1575043694:100900..102003Clytia hemisphaericaexon
TCONS_00015673-exon-sc0000215-1510915933:102100..102143TCONS_00015673-exon-sc0000215-1510915933:102100..102143Clytia hemisphaericaexon
TCONS_00015673-exon-sc0000215-1510915933:100900..102003TCONS_00015673-exon-sc0000215-1510915933:100900..102003Clytia hemisphaericaexon
TCONS_00015673-exon-sc0000215-1491911889:102100..102143TCONS_00015673-exon-sc0000215-1491911889:102100..102143Clytia hemisphaericaexon
TCONS_00015673-exon-sc0000215-1491911889:100900..102003TCONS_00015673-exon-sc0000215-1491911889:100900..102003Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:100900..102143 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.540706	1.0817	1.18273	1.1743	0.969514	0.810786	0.582904	1.09142	0.573584	0.434255	0.65327	0.503772	0.553729	0.756979	0.236672	0.461798	0.199051	0.552355	0.724953	0.296017	0.387263	0.384332	0.0433542	0.0394404	2.64211	2.32684	0.632664	0.54412	0.347901	0.428591
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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