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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015671 ID=TCONS_00015671|Name=TCONS_00015671|organism=Clytia hemisphaerica|type=transcript|length=211bp
AAATAGCCTTTACTCTGTTCAAGCAAATTGACATCATAAAGAGCTCGGCC
AATGTCACGAAATGAGTCATACGAACTTGATAAATCCAAAGATTCGATAA
TTTCAAGACCTTCTTTGACTTTTCCTTTCAAGATCATACAGCAGGCAATT
TGAACCTTGCTATTGGTTCCATATGTAGTATTATCATCATACTCTGGTAT
TTTGAAGAGTA Run BLAST on NCBI transcript from alignment at sc0000215:75266..84363- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015671 ID=TCONS_00015671|Name=TCONS_00015671|organism=Clytia hemisphaerica|type=transcript|length=9098bp|location=Sequence derived from alignment at sc0000215:75266..84363- (Clytia hemisphaerica)
AAATAGCCTTTACTCTGTTCAAGCAAATTGACATCATAAAGAGCTCGGCC
AATGTCACGAAATGAGTCATACGAACTTGATAAATCCAAAGATTCGATAA
TATCAAGACCTTCTTCGACTTTTTCTTTCAAGATCATACAGCAGGCAATT
TGAACCTTGCTATTGGTTCCATATAAATTATTATCATCTAACTCTGGTAT
TTTGAAGAGTAATTCCAACGCTTTATCATACTCTCCTAACTCTTTGTAAC
AAATGCTTGCCAAAAAGGTTTCTATTGATGTTGACATTTTTTTCTTCATA
CATTCCAAAGCTTTCTTCCAATGTCCATTTCCTATTAAAACCAATTCCTT
AAATCTATGGTTGATTTTTTTATGACTTTGTGGTGAAAGAACTTCACGAT
AGGCGCACAGGGAATCCAATAAACGATCTTTAGCCAACGATGATGGAACA
TTGATAAGAATCCTCACTTCCAAACTGCCCAGTGCTGACAGCATATATTG
AGCTTGTTCGTTTTCAATACACATGTTAGGCAGAAGATTCAGCTCAATAA
GATAAGGCACTGGATGAGATTGATCATTTTCCTTAAAATTATAAATATAT
CTTGAAATATAAAACTTGTCGACTGAGTTGACCATTGCCATCATAAATTC
AACGAGAAAGAAATCATCGGATAAGAATTGCAGCAAAGTATCCCGATAAC
ACGGTTGCTTATAAATGAACATGATTTGATTATACCAAAGAAGTTTTTCT
TCATTACGATCATGTTGAATCGTAAGGTTTTTCCCTGCCATTGCAATAAG
CTTTTGAATAGCATGTCTTTTCCGATTTTCCTGTATTATATAAATTTTGA
TGGCCTCTTGGTACAAAGAATGAATAGTCAAATAATTCACTTTTTTATGA
CTAAACTCAACGATCCTTTCTTTTCTTTCAACAATGGAATAGTTAGTCAA
AATTTGTTTGACTTTGTTATATTCTCTCTTCCGTTCGTAACATCTTTCAA
GAAACTCTTCTTTCATGCAAGTACCGTCTAGAATACCGGCAACCGATAAA
AGTTCAATGGCTTCTGGATTGTCTTTCTCAATTCTCTTGATTGTTTTTGA
GAAAGAAGCCAGTACTGAAGTGTTGATTCCCAAGCCAAGAGCAACCCTTT
GAGACAAAACATCACCTTTATCTTCTTGGAGATCTGTAAGGTATTCAGCC
ACAGACATTCCAGTTTGATGCATTGTTGCCACCGCATGTTGAAGCCCTAA
TGGATGACATTCTAATTCGTCTGTCAGTTTCGTTATAGCCTGGATGTTAG
GTGTGGGTAGATGGTCTTTTAAAAACTGGATTGCTATTGGTTGAGCCCAG
TTCTCCAATGGAACGACTTCAAATCCTTGTCCCCAATGTTTTATTTGTGT
TGTGATGACTTTGTGTTGAGAGAGGTCCAAGTAATCGAACAATTGGCCAA
CATCGGTGCAGTTATCGTAAATGTAAAGCACTCTTTCATTCGTAAAGTAT
GTCTTCAGAAGGTTCACAATGATTTTGACGTTGGTTTTGTCGTGAAATTG
GAGGATAGAGGCGATGTTCGTGAATGTGTCTTCGATGTTATCGACATTAA
CCCAAATCACGTGATCGTAATTAGTTTTATTGATGACGTAATATTGTTTT
GCAAGTTCACTTTTACCGACACCTGGGATACCAGAAATCACCACATTAGA
TTTGTTGTTAACATTCAGATGTTGATAAATTTCGCCTAATTCGTTTTGTC
TCCCGATAAAGTTTTGGTTTGCTGGTGGAAGGTCATATTCAAAAGACGGT
AACAAGTCATTCAGTTTGTTTTGAGGACATCCTAAAGCCAGTAATGGTTT
TTCCAGGTATCTAAAGGACTTTCGATATTCTAATGTCAAAATGGGTACTG
GACCATGCTGCATTCGATTTCTTTCGAGTTTCAATCGAAGAGCATTTGCA
ATGTCATCAATATCATTGACATCTGGTTCATTATCCCAACCATTGGAAGG
TGCCTTGTGACCACATAATGTTCGTATCAAAAGAAAAAGCAAAGTGATAT
CAAATTGTGTTGGATCTGTTTGCTGAGATGGTGGAAAGACTAGATCGTAT
TGGTCGTTTTTCAACACTCCTCTCTTTTTCAATTTATCCAATTTATTCTT
GTGTTTGGTCTGTGACAATTCTTGATACAATGCCATTGGATTTATTGAAA
ACCTTTTGTGAAATAAATTACGTAAACATATTGTAGATTTCTCACGTAAG
GTTCGCTGTTTGAAACCGTTCTTCTGTTGTTGTGTCGGATATTTTGTTTG
TAATCCAATATTCGCTGAAGCCATTTTCGTTTCAGATTTAACTTTCAGGT
CACCATCTTGACCTCCTTGAGAACGTTTGTATCTGAATTATTTTCTTTAA
GTACATAAGTAACATAAGCAGGATATCAGTTCATTATAATTATGATATCT
GAAGCATTGATCGATCCTTTAGTTTACTAGATCTTATCACATTACTGCTA
ANCAGGATATCAGTTCATTATAATTATGATATCTGAAGCATTGATTGATC
CTTTAGTTTACTAGATCTTATCACACTTCATTACTGCTACAAACTGCTAC
TTCTTAAAAGAAGTTTTTACTAAAGAAGTTATAGGTTCAGACAAAATATA
TCACCCACTTTTTTCTCTTATTGCATCTGTTTATTCAGGTTTATTTCTTA
ATTCGTGTTTCCCAGCAACGATATAAAGGAATAACAAAGGGGTCGTTGCG
CGGGCCTTTTCCATTTTTTCCCTATGATCGCTATAATAGAAAGTGAAGCT
TAGCATATCGCCCCAGTCTTTTTTTCCGTTTCTCAGCAAACCGACAATTT
TACGACTTATTTTCTAATTCGTAGACTCAACGAAAATAACCTTTTATATT
ATTTTACTTCTTCTTCTTTTCTTTTTATATACCTAGTATATAAAATAAAG
TATGGTCGTCTAGACAACAAGAGTACGAAAAAGAAATTTGTAAACATAGA
CAAACTAACATAACACCAAGTTAACAAAAATAAGTACTATACAGTATGTG
GCCCCCAAAACGTCGATCAAATTTAAAATTTCTCTGAAATCTATTAGAGG
AAAAGACGTTTTACAAAAATTTTTGCTGCATTAAAAACTTTAACATCTCT
ACTTTATTTCCCAGAAGTTCTTTTTCAAAATTTTCAATTTCAACAATATT
TCAATCGCTGAAAGATAGGTAGCTTTTTTCAAATGGCCCCCAAAACGGAG
GTTTGCGATTTTAGCGATTTCTCGAGATATCTTTAAGATATGAATANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAATACAAAATTTTGACCATAGTTTT
GAAATGTGATTTAGAGGGTTTTGGGCATAAATTTGTTTGATAAAATTTTT
ACAGTATACCCCTGGTTGTCAAAACGCACGTTTGGGGCCCCCAAAACGTC
GGTGTAGTTAAAATCAAATTATGAAGCCCAGAGGTAATAGGGGGAGAAAC
TATGAACATATTTGTATTTTCCCTTAAATTTGCGACCCGATGGATGTAAA
ATTTATGATTTTTATAAAATATTTATGATTTTTATAAAATATTTCAAGAT
TTTTGATATTGCAAAGTCCAAACTGAAAATTTAGAAATTTTCATAATGAC
AATTTTGATTGAACAACGTCTTAATCAAGTTTCTGAAAACCAATCTCTTT
TGAAAATAGTTCCATTCATGTATGGAATATGCTGTGAAAGTTTTAGAAAA
ACAGCTTAACTGAAACTGAAAATATTAAGCTTTAATAGTATTTTTCTCCT
ACATTTTGCAAAAAAAATGACAGATTTTGCCGTATTTGCTGATTCAGCGA
AAGTTTTTATATATAATGTTAATTTTTTGTTATAAACTATCAAGTCAAGC
TGGTAGGAACGGAATTTCAAGATTTTTGCTGTTACCCATGTTTAGAATTT
TCGGTTTTATCAATGCTGATTCTAGGACCCAAAATACTGGTTGACCTTAA
AGATGCTATATATATTTACCCATCCTCTAAAGTCACAGATGTATCTGCAT
TTTCTGAAAGGCATTAGGTGTAGAAAGTTTCCTATACCCTATTTTAATAA
CTTATTTTCACTATCCAGGGAGCTATAGTGAATTATATGCTAATTTTATC
TAATTTTGTTGTTGAAATATTTCCTTTAGACGCAAATATGTTATTTTGAA
GCCTGTTGAAGCTGCCTTAAACCATCCAATCCAACCAACCAACCAATTCA
ATTCAATTCAATTCAAAAGCATTCTCATTTTTTAAATATGACCATCATTC
TTTCAAAATAAATAAAAATCGTCTAATTCTGATAAATCTACAGGTCAGAA
TCCTCATTTTAATGACGACCTACGTTATAGGGGCCGTCTCCGTTTTGGGG
GCCATATACTGTAGTGATTCAAAAAGGGCAGGTGAATGAGAAAATCTGAA
AGAAATCTATCGACGTGTGACTAATCTCGATATTCTTTCCGCCGTTATAC
TAAGTATCACTTGACAAAAAGCGCCGAAGGAATAAATATAAATTCATTTA
TTTTCTAATTCGTAAACTCAAACGAAAATAACCTTATTTATTATTTCACT
TCTTTTTCTTTTCTCTTGATATACCTAATATATAAAACATAGTATGGTCG
TCTAGATAACCTGTAACTTGTCACAGAGAGAGAGGTACGTGTGTATCAGA
GGCCCATCCCTAAGGAAACTTTCAAAAGACATTTTCATCTTCTTGAACAT
ATCTATCTTTCACACCAGTGGTTTTCCACCTGCCATGTTTCTGAAAAAGC
CTATCATTAACTCCCTGGTTAGCAGCTTCTGTAGCTCCACCCCTCCTTAG
GCCGTGGAGTCCAAAAGGTTTTTCATCGAGATATATTCTCTTGATATAAG
ACAAGACAACGGACCTACTCTTGTCTCCCGAATAGACGTCCCCCTGCTAA
TTGTTAAGAGAAAAAAATCCATCCCCCCGCTCTTATTAAGACCCCCCCCC
GCTATTTCATTACAGTGAAGATACACCTTAAATTTGTTAAGATTTTCCTT
TTTGTTGGTATTGGTTCTTATTTTACGTGTTCCTTTATTAAAATTTATTT
TTTGTTGTTAAAATTGATATCAGTTAAAAAAAATTCTGTTTTCAAATTAC
CTCCCCCCCTCTTATTCCATCCCCCTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTATTCCCCCCCCCCTGCTTATTCGGACCCCGCCTCCCGTCTAT
TCGGGAGACAAGAGTAGCCTTTATTCTTTCTCTATTTATGAATACCCTTT
TTCTTAAAGAAAGATGTTGCACGGGATAGATACGCTTGCAGTGTCAGTGA
ATCTTTGTAGTGTCTTGCTGGACAACTTAACTGTCCAACTTGACAATAAA
CACCCAGGTATCTTCACGATGTGGATCAGTTTTCGATTTTTCTATGAATA
TTTTCATATATGTCTCAAATTAGAAAATTAGATTCGAAACCTCGTCATAC
TGTAGAAAACCAGTGTATGATAAAATGATAACGGCAAAGTTCCTCAGATC
AACTAGGCTAGCCTGATCTCCCTTGACCAATTGAAAGATCTTGCGAATAT
CATCTGACTGGTGATTGGTTCTTTCTTCGACTTTTTCCTATGGCAGATCC
TTTTTACTTCGAAGCGACATTATGGAAATGTTTCACGGCGTAGAAAAACG
GCTTCTTGGAAAGATACGTCCAGGGTTTGATACGTCTAACTAGATAAAAC
TGATGATAAATAAAACGAAGTAAAAGTCTTTAGCTGGATAAGGTTGGATC
TCTTCAAAAGTCGCACACCATCTTTCCAATCTTTTGAAGTAGCAGCTATA
TTTGTATATACTCTCCGCACGAGCGTTCGTCAGGATATCTCCGATTCCAG
TGGCAAGCTCTTTAAGCTGTGGATCATCAACGCGAGAAGATAGGTCTTGG
GCAACTTGTGCTAAAAGAATTGTTGAAATAAATTGATGAAATTACAATTA
TGCCATAAATGGGGTATTTTCGACTTTATGCTATGACAGCCAAGCTGCCA
TAATGACCCAGTCACTTAACTCTTGCCTCGGTTGATACCACTAAACAAGC
CCTTGCCTCATTCTACCTCTGAGGTGTAGAAAATACATGATAAATAATAA
TTTTTAGCCCCAGTTGATACTACTAATTTACCCTTGCCTCGTCCTACATC
TGGGGTGTAGAGAATTCCATGATGATGGAGCTTATCGATTGTGGTAAATT
GATGGAAAAATTAAATAGAAAACGCTGGATGAAGTAATGCTGTGTATGTC
GAAAAAACTTTGTAAGAAACCATGTAACCTGTCAAGAAATAACTTACTGA
ACTTAACTGGGAACAATAATCATGTTCAACATGCTATTGATTTAACATTG
AAATTTAACAAGAATTTCTCATGGGTAAATGAGTACACGTTTTTTTCTTT
ATTAGAACCCAGTTTATAAGAACATTTAGGCTGAAATTCGTCGAAAAATT
AAGAACATCGTAAGAACATGCCCAGCCTCAGTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAACGCGTTTAAGAACATTTTAGGCTGAAAATTGCTAA
AAAAAATAAGCACATCCAGGCTCAGCCAAATTTTAGGTGTTCTAATAAAA
AAAAAACGTGTACTCAACAATTTTGGTTTACTGTCTCAAAAATGAACAAA
TAAAAACTTTTTATTTATTAAACTTTTTTTATTAATGCAATCCTAGAAAT
TATGACTTCTCGAGATGTTTTAAAAAGAAAAACTCAGATTGAAAATATGA
AAATTAACAGTGCTAGTTTTAATACAACAAGACACATAAAGTTAATGTGG
ATTTGCCAACACTTTTGATAACAAACAAAGTTTAGGATTATTTTTCTGAA
AGATTTTATTTTATCTACAGTTAACTCAAAGAAAACAGATAAATTAAAGA
TAAATTTCAGTACAATTAGTAATTTTGTATTCCCAAATAAAATATAATAC
TAAAAGTGCAGCTAATTCATAATTGATCATTTATAAAGATACTTTCAAAA
TGCAATTATTGATTAAAAGGTTTTATTTTTACATAAGTGTTTCCGTTTCA
TATCAGACACATATTTCATATCAGGACAGTGTCTTGCTATTGTTATATTA
TGCTGATATAAGCAAAAATTGTTTTTCTTTTCCTCATTCTGACCAATTTT
GCTCCACTTCCGTGTCAATTCAATGTGAAAAGACTTGAGAATCAAAGTTG
AAGAACAACCATCTTATTCAAAAACAAAACCTTTAACTATCAGGTCAAAA
AGTAAAGCTACCGAATTTTCGGAGTCCCGATGCTATTTGTTTTATTTCAT
CTCATATCCCCCGCTTATTTATTTCTAAAATGTTTTCAGCTATTAAAAGC
TGAACTGGTTTAATTAGCCTGGTTTTAGTCTATAATTACCTTGTTATTGG
GTTTTTAGAGGTACAATTTCGGACCCTCCGGTAATCAGGTCTCCCCGTTT
ATTATAATTTGAAGAAATTTCGGAACCCGTCCTTTTATTCAGACCCTCTA
CTATTTGGAATCTTATAGAATATTTGAAAAACATGATAGAATGAGCAAGT
TGGTAGCTGCTGAAAACTTAGATTTAGTGCATGGAAAAATATTAAACAAC
GAATCAAAAAGCAATAGCAAGTAACAGATTGTTTATTTTGATTTCTGCAT
TTTTAAAAATATCTGCATCAACGTCTTCAATGATGTTCTCATGGTTACAA
ATTTTGCCTTCGAAACTTTTAATCATTCGATACAAAATCAATGCTTTTCT
AAATTCTTCATTTTTCTCCCAATATTCAGCAAGCATTAAAGTTTCACGAA
ATAAATTCCCGGTGTATACTTGGTTATCTATTTCTGGTGATACTTCAGTT
TGTAAATACTCCCTCGCTTCTTCGACTTTGTTTTGGTCAATCAAATGACA
ATAAATTAACAGTTTCGCCCGACTTGGACGACAAAATACATAAGGTGAAA
GCACAGAAAGATCTAATTTGAGCAATGCAATTATCAGTTCATTAGTGGTA
GTTCCCGTAGTAGTACTCTGCAAGATGATCATTTTGCAAAAAGCATCCAG
ATCATAATGGTCGCAGCGTGGTTTAAGCCATTTCTTGAAATAGCCTTTAC
TCTGTTCAAGCAAATTGACGTCATAAAGAGCTCGGCCAATGTCACGTAAT
GATTTATACGAACTTGATAAATCCATTGATTCGATAACTTCAAGACCTTC
TTTGACTTTTCCTTTCAAGATCATACAGCAGGCAATTTGAACCTTGCTAT
TGGTTCCATATGTAGTATTATCATCATACTCTGGTATTTTGAAGAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015671-exon-sc0000215-1575043694:84263..84363 | TCONS_00015671-exon-sc0000215-1575043694:84263..84363 | Clytia hemisphaerica | exon |
| TCONS_00015671-exon-sc0000215-1575043694:75266..75375 | TCONS_00015671-exon-sc0000215-1575043694:75266..75375 | Clytia hemisphaerica | exon |
| TCONS_00015671-exon-sc0000215-1510915933:84263..84363 | TCONS_00015671-exon-sc0000215-1510915933:84263..84363 | Clytia hemisphaerica | exon |
| TCONS_00015671-exon-sc0000215-1510915933:75266..75375 | TCONS_00015671-exon-sc0000215-1510915933:75266..75375 | Clytia hemisphaerica | exon |
| TCONS_00015671-exon-sc0000215-1491911889:84263..84363 | TCONS_00015671-exon-sc0000215-1491911889:84263..84363 | Clytia hemisphaerica | exon |
| TCONS_00015671-exon-sc0000215-1491911889:75266..75375 | TCONS_00015671-exon-sc0000215-1491911889:75266..75375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000215 | supercontig | sc0000215:75266..84363 - |
Blast
The following BLAST results are available for this feature:
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