|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015670 ID=TCONS_00015670|Name=TCONS_00015670|organism=Clytia hemisphaerica|type=transcript|length=323bp
GAAGTTTTTCTTCATTACGATCATGTTGAATCGTAAGGTTTTTCCCTGCC
ATTGCAATAAGCTTTTGGATAGTATGTCTTTTCCGATTTTTCTGTATTAT
ATAAATTTTGATAGCCTCTTGGTACAACGAATGAATAGTCaaataattca
cttttttgtgaCTGAACTCGACGATCCTTTCGTTTCTTTCAACGATGGAA
TAGTTAGTCAAAATTAGTTTGACCTTGTTATATTCTCTCTTCCGTTTATA
ACATCTTTCAAGAAACTCTTCTTTCATGCAAGTACCGTCTAGAATACCGA
CAACCGATAGAAGTTCAATGGCT Run BLAST on NCBI transcript from alignment at sc0000215:74421..83624- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015670 ID=TCONS_00015670|Name=TCONS_00015670|organism=Clytia hemisphaerica|type=transcript|length=9204bp|location=Sequence derived from alignment at sc0000215:74421..83624- (Clytia hemisphaerica)
GAAGTTTTTCTTCATTACGATCATGTTGAATCGTAAGGTTTTTCCCTGCC
ATTGCAATAAGCTTTTGAATAGCATGTCTTTTCCGATTTTCCTGTATTAT
ATAAATTTTGATGGCCTCTTGGTACAAAGAATGAATAGTCAAATAATTCA
CTTTTTTATGACTAAACTCAACGATCCTTTCTTTTCTTTCAACAATGGAA
TAGTTAGTCAAAATTTGTTTGACTTTGTTATATTCTCTCTTCCGTTCGTA
ACATCTTTCAAGAAACTCTTCTTTCATGCAAGTACCGTCTAGAATACCGG
CAACCGATAAAAGTTCAATGGCTTCTGGATTGTCTTTCTCAATTCTCTTG
ATTGTTTTTGAGAAAGAAGCCAGTACTGAAGTGTTGATTCCCAAGCCAAG
AGCAACCCTTTGAGACAAAACATCACCTTTATCTTCTTGGAGATCTGTAA
GGTATTCAGCCACAGACATTCCAGTTTGATGCATTGTTGCCACCGCATGT
TGAAGCCCTAATGGATGACATTCTAATTCGTCTGTCAGTTTCGTTATAGC
CTGGATGTTAGGTGTGGGTAGATGGTCTTTTAAAAACTGGATTGCTATTG
GTTGAGCCCAGTTCTCCAATGGAACGACTTCAAATCCTTGTCCCCAATGT
TTTATTTGTGTTGTGATGACTTTGTGTTGAGAGAGGTCCAAGTAATCGAA
CAATTGGCCAACATCGGTGCAGTTATCGTAAATGTAAAGCACTCTTTCAT
TCGTAAAGTATGTCTTCAGAAGGTTCACAATGATTTTGACGTTGGTTTTG
TCGTGAAATTGGAGGATAGAGGCGATGTTCGTGAATGTGTCTTCGATGTT
ATCGACATTAACCCAAATCACGTGATCGTAATTAGTTTTATTGATGACGT
AATATTGTTTTGCAAGTTCACTTTTACCGACACCTGGGATACCAGAAATC
ACCACATTAGATTTGTTGTTAACATTCAGATGTTGATAAATTTCGCCTAA
TTCGTTTTGTCTCCCGATAAAGTTTTGGTTTGCTGGTGGAAGGTCATATT
CAAAAGACGGTAACAAGTCATTCAGTTTGTTTTGAGGACATCCTAAAGCC
AGTAATGGTTTTTCCAGGTATCTAAAGGACTTTCGATATTCTAATGTCAA
AATGGGTACTGGACCATGCTGCATTCGATTTCTTTCGAGTTTCAATCGAA
GAGCATTTGCAATGTCATCAATATCATTGACATCTGGTTCATTATCCCAA
CCATTGGAAGGTGCCTTGTGACCACATAATGTTCGTATCAAAAGAAAAAG
CAAAGTGATATCAAATTGTGTTGGATCTGTTTGCTGAGATGGTGGAAAGA
CTAGATCGTATTGGTCGTTTTTCAACACTCCTCTCTTTTTCAATTTATCC
AATTTATTCTTGTGTTTGGTCTGTGACAATTCTTGATACAATGCCATTGG
ATTTATTGAAAACCTTTTGTGAAATAAATTACGTAAACATATTGTAGATT
TCTCACGTAAGGTTCGCTGTTTGAAACCGTTCTTCTGTTGTTGTGTCGGA
TATTTTGTTTGTAATCCAATATTCGCTGAAGCCATTTTCGTTTCAGATTT
AACTTTCAGGTCACCATCTTGACCTCCTTGAGAACGTTTGTATCTGAATT
ATTTTCTTTAAGTACATAAGTAACATAAGCAGGATATCAGTTCATTATAA
TTATGATATCTGAAGCATTGATCGATCCTTTAGTTTACTAGATCTTATCA
CATTACTGCTAANCAGGATATCAGTTCATTATAATTATGATATCTGAAGC
ATTGATTGATCCTTTAGTTTACTAGATCTTATCACACTTCATTACTGCTA
CAAACTGCTACTTCTTAAAAGAAGTTTTTACTAAAGAAGTTATAGGTTCA
GACAAAATATATCACCCACTTTTTTCTCTTATTGCATCTGTTTATTCAGG
TTTATTTCTTAATTCGTGTTTCCCAGCAACGATATAAAGGAATAACAAAG
GGGTCGTTGCGCGGGCCTTTTCCATTTTTTCCCTATGATCGCTATAATAG
AAAGTGAAGCTTAGCATATCGCCCCAGTCTTTTTTTCCGTTTCTCAGCAA
ACCGACAATTTTACGACTTATTTTCTAATTCGTAGACTCAACGAAAATAA
CCTTTTATATTATTTTACTTCTTCTTCTTTTCTTTTTATATACCTAGTAT
ATAAAATAAAGTATGGTCGTCTAGACAACAAGAGTACGAAAAAGAAATTT
GTAAACATAGACAAACTAACATAACACCAAGTTAACAAAAATAAGTACTA
TACAGTATGTGGCCCCCAAAACGTCGATCAAATTTAAAATTTCTCTGAAA
TCTATTAGAGGAAAAGACGTTTTACAAAAATTTTTGCTGCATTAAAAACT
TTAACATCTCTACTTTATTTCCCAGAAGTTCTTTTTCAAAATTTTCAATT
TCAACAATATTTCAATCGCTGAAAGATAGGTAGCTTTTTTCAAATGGCCC
CCAAAACGGAGGTTTGCGATTTTAGCGATTTCTCGAGATATCTTTAAGAT
ATGAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATACAAAATTTTG
ACCATAGTTTTGAAATGTGATTTAGAGGGTTTTGGGCATAAATTTGTTTG
ATAAAATTTTTACAGTATACCCCTGGTTGTCAAAACGCACGTTTGGGGCC
CCCAAAACGTCGGTGTAGTTAAAATCAAATTATGAAGCCCAGAGGTAATA
GGGGGAGAAACTATGAACATATTTGTATTTTCCCTTAAATTTGCGACCCG
ATGGATGTAAAATTTATGATTTTTATAAAATATTTATGATTTTTATAAAA
TATTTCAAGATTTTTGATATTGCAAAGTCCAAACTGAAAATTTAGAAATT
TTCATAATGACAATTTTGATTGAACAACGTCTTAATCAAGTTTCTGAAAA
CCAATCTCTTTTGAAAATAGTTCCATTCATGTATGGAATATGCTGTGAAA
GTTTTAGAAAAACAGCTTAACTGAAACTGAAAATATTAAGCTTTAATAGT
ATTTTTCTCCTACATTTTGCAAAAAAAATGACAGATTTTGCCGTATTTGC
TGATTCAGCGAAAGTTTTTATATATAATGTTAATTTTTTGTTATAAACTA
TCAAGTCAAGCTGGTAGGAACGGAATTTCAAGATTTTTGCTGTTACCCAT
GTTTAGAATTTTCGGTTTTATCAATGCTGATTCTAGGACCCAAAATACTG
GTTGACCTTAAAGATGCTATATATATTTACCCATCCTCTAAAGTCACAGA
TGTATCTGCATTTTCTGAAAGGCATTAGGTGTAGAAAGTTTCCTATACCC
TATTTTAATAACTTATTTTCACTATCCAGGGAGCTATAGTGAATTATATG
CTAATTTTATCTAATTTTGTTGTTGAAATATTTCCTTTAGACGCAAATAT
GTTATTTTGAAGCCTGTTGAAGCTGCCTTAAACCATCCAATCCAACCAAC
CAACCAATTCAATTCAATTCAATTCAAAAGCATTCTCATTTTTTAAATAT
GACCATCATTCTTTCAAAATAAATAAAAATCGTCTAATTCTGATAAATCT
ACAGGTCAGAATCCTCATTTTAATGACGACCTACGTTATAGGGGCCGTCT
CCGTTTTGGGGGCCATATACTGTAGTGATTCAAAAAGGGCAGGTGAATGA
GAAAATCTGAAAGAAATCTATCGACGTGTGACTAATCTCGATATTCTTTC
CGCCGTTATACTAAGTATCACTTGACAAAAAGCGCCGAAGGAATAAATAT
AAATTCATTTATTTTCTAATTCGTAAACTCAAACGAAAATAACCTTATTT
ATTATTTCACTTCTTTTTCTTTTCTCTTGATATACCTAATATATAAAACA
TAGTATGGTCGTCTAGATAACCTGTAACTTGTCACAGAGAGAGAGGTACG
TGTGTATCAGAGGCCCATCCCTAAGGAAACTTTCAAAAGACATTTTCATC
TTCTTGAACATATCTATCTTTCACACCAGTGGTTTTCCACCTGCCATGTT
TCTGAAAAAGCCTATCATTAACTCCCTGGTTAGCAGCTTCTGTAGCTCCA
CCCCTCCTTAGGCCGTGGAGTCCAAAAGGTTTTTCATCGAGATATATTCT
CTTGATATAAGACAAGACAACGGACCTACTCTTGTCTCCCGAATAGACGT
CCCCCTGCTAATTGTTAAGAGAAAAAAATCCATCCCCCCGCTCTTATTAA
GACCCCCCCCCGCTATTTCATTACAGTGAAGATACACCTTAAATTTGTTA
AGATTTTCCTTTTTGTTGGTATTGGTTCTTATTTTACGTGTTCCTTTATT
AAAATTTATTTTTTGTTGTTAAAATTGATATCAGTTAAAAAAAATTCTGT
TTTCAAATTACCTCCCCCCCTCTTATTCCATCCCCCTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTATTCCCCCCCCCCTGCTTATTCGGACCCCGC
CTCCCGTCTATTCGGGAGACAAGAGTAGCCTTTATTCTTTCTCTATTTAT
GAATACCCTTTTTCTTAAAGAAAGATGTTGCACGGGATAGATACGCTTGC
AGTGTCAGTGAATCTTTGTAGTGTCTTGCTGGACAACTTAACTGTCCAAC
TTGACAATAAACACCCAGGTATCTTCACGATGTGGATCAGTTTTCGATTT
TTCTATGAATATTTTCATATATGTCTCAAATTAGAAAATTAGATTCGAAA
CCTCGTCATACTGTAGAAAACCAGTGTATGATAAAATGATAACGGCAAAG
TTCCTCAGATCAACTAGGCTAGCCTGATCTCCCTTGACCAATTGAAAGAT
CTTGCGAATATCATCTGACTGGTGATTGGTTCTTTCTTCGACTTTTTCCT
ATGGCAGATCCTTTTTACTTCGAAGCGACATTATGGAAATGTTTCACGGC
GTAGAAAAACGGCTTCTTGGAAAGATACGTCCAGGGTTTGATACGTCTAA
CTAGATAAAACTGATGATAAATAAAACGAAGTAAAAGTCTTTAGCTGGAT
AAGGTTGGATCTCTTCAAAAGTCGCACACCATCTTTCCAATCTTTTGAAG
TAGCAGCTATATTTGTATATACTCTCCGCACGAGCGTTCGTCAGGATATC
TCCGATTCCAGTGGCAAGCTCTTTAAGCTGTGGATCATCAACGCGAGAAG
ATAGGTCTTGGGCAACTTGTGCTAAAAGAATTGTTGAAATAAATTGATGA
AATTACAATTATGCCATAAATGGGGTATTTTCGACTTTATGCTATGACAG
CCAAGCTGCCATAATGACCCAGTCACTTAACTCTTGCCTCGGTTGATACC
ACTAAACAAGCCCTTGCCTCATTCTACCTCTGAGGTGTAGAAAATACATG
ATAAATAATAATTTTTAGCCCCAGTTGATACTACTAATTTACCCTTGCCT
CGTCCTACATCTGGGGTGTAGAGAATTCCATGATGATGGAGCTTATCGAT
TGTGGTAAATTGATGGAAAAATTAAATAGAAAACGCTGGATGAAGTAATG
CTGTGTATGTCGAAAAAACTTTGTAAGAAACCATGTAACCTGTCAAGAAA
TAACTTACTGAACTTAACTGGGAACAATAATCATGTTCAACATGCTATTG
ATTTAACATTGAAATTTAACAAGAATTTCTCATGGGTAAATGAGTACACG
TTTTTTTCTTTATTAGAACCCAGTTTATAAGAACATTTAGGCTGAAATTC
GTCGAAAAATTAAGAACATCGTAAGAACATGCCCAGCCTCAGTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAACGCGTTTAAGAACATTTTAGGCTG
AAAATTGCTAAAAAAAATAAGCACATCCAGGCTCAGCCAAATTTTAGGTG
TTCTAATAAAAAAAAAACGTGTACTCAACAATTTTGGTTTACTGTCTCAA
AAATGAACAAATAAAAACTTTTTATTTATTAAACTTTTTTTATTAATGCA
ATCCTAGAAATTATGACTTCTCGAGATGTTTTAAAAAGAAAAACTCAGAT
TGAAAATATGAAAATTAACAGTGCTAGTTTTAATACAACAAGACACATAA
AGTTAATGTGGATTTGCCAACACTTTTGATAACAAACAAAGTTTAGGATT
ATTTTTCTGAAAGATTTTATTTTATCTACAGTTAACTCAAAGAAAACAGA
TAAATTAAAGATAAATTTCAGTACAATTAGTAATTTTGTATTCCCAAATA
AAATATAATACTAAAAGTGCAGCTAATTCATAATTGATCATTTATAAAGA
TACTTTCAAAATGCAATTATTGATTAAAAGGTTTTATTTTTACATAAGTG
TTTCCGTTTCATATCAGACACATATTTCATATCAGGACAGTGTCTTGCTA
TTGTTATATTATGCTGATATAAGCAAAAATTGTTTTTCTTTTCCTCATTC
TGACCAATTTTGCTCCACTTCCGTGTCAATTCAATGTGAAAAGACTTGAG
AATCAAAGTTGAAGAACAACCATCTTATTCAAAAACAAAACCTTTAACTA
TCAGGTCAAAAAGTAAAGCTACCGAATTTTCGGAGTCCCGATGCTATTTG
TTTTATTTCATCTCATATCCCCCGCTTATTTATTTCTAAAATGTTTTCAG
CTATTAAAAGCTGAACTGGTTTAATTAGCCTGGTTTTAGTCTATAATTAC
CTTGTTATTGGGTTTTTAGAGGTACAATTTCGGACCCTCCGGTAATCAGG
TCTCCCCGTTTATTATAATTTGAAGAAATTTCGGAACCCGTCCTTTTATT
CAGACCCTCTACTATTTGGAATCTTATAGAATATTTGAAAAACATGATAG
AATGAGCAAGTTGGTAGCTGCTGAAAACTTAGATTTAGTGCATGGAAAAA
TATTAAACAACGAATCAAAAAGCAATAGCAAGTAACAGATTGTTTATTTT
GATTTCTGCATTTTTAAAAATATCTGCATCAACGTCTTCAATGATGTTCT
CATGGTTACAAATTTTGCCTTCGAAACTTTTAATCATTCGATACAAAATC
AATGCTTTTCTAAATTCTTCATTTTTCTCCCAATATTCAGCAAGCATTAA
AGTTTCACGAAATAAATTCCCGGTGTATACTTGGTTATCTATTTCTGGTG
ATACTTCAGTTTGTAAATACTCCCTCGCTTCTTCGACTTTGTTTTGGTCA
ATCAAATGACAATAAATTAACAGTTTCGCCCGACTTGGACGACAAAATAC
ATAAGGTGAAAGCACAGAAAGATCTAATTTGAGCAATGCAATTATCAGTT
CATTAGTGGTAGTTCCCGTAGTAGTACTCTGCAAGATGATCATTTTGCAA
AAAGCATCCAGATCATAATGGTCGCAGCGTGGTTTAAGCCATTTCTTGAA
ATAGCCTTTACTCTGTTCAAGCAAATTGACGTCATAAAGAGCTCGGCCAA
TGTCACGTAATGATTTATACGAACTTGATAAATCCATTGATTCGATAACT
TCAAGACCTTCTTTGACTTTTCCTTTCAAGATCATACAGCAGGCAATTTG
AACCTTGCTATTGGTTCCATATGTAGTATTATCATCATACTCTGGTATTT
TGAAGAGTAATTCCAATGCTTTATCATACTCCCTCAACTCTTTGTAACAA
ATGCTTGCCAAAAATGTTTCTCTTGATGTTGACATTTTTTTCTTAATATA
TTCCAAAGCTTTCTGCCAATGCTCATTGTCCATCAAAACTATTTCATTAA
AGCTATGGTTGCTTTTTGTTGAAAAAAATTCACGATTTCTGTACAGCAAA
TCCAATAAACTGTATTTAGCCTTTGATGATCGAACATGGATAAGAATCCT
CATTTCCAAACTGTCCAGTGCTGACAGTATATATTGAGCTTGTTCGTTAT
CCACAAGCTTCTCATGCAGAAAATACAGTTCGATAAGATAAGGCACTGGA
TGAGATTGATCATTTTTCTTGAAATTATAAATATATCTTGAAATATAAAA
CCTGTCTTTTGAAAAAACCTGGAGCATTCTCATCATAATTTCAACGACAA
AGAAATCATCGGATAAGATTTGCAGCAAAGTATCCCGATAACACGGTTGC
TTATAAATGAACATGATTTGATTGTACCAAAGAAGTTTTTCTTCATTACA
ATCATGTTGAATCGTAAGGTTTTTCCCTGCCATTGCAATAAGCTTTTGGA
TAGTATGTCTTTTCCGATTTTTCTGTATTATATAAATTTTGATAGCCTCT
TGGTACAACGAATGAATAGTCAAATAATTCACTTTTTTGTGACTGAACTC
GACGATCCTTTCGTTTCTTTCAACGATGGAATAGTTAGTCAAAATTAGTT
TGACCTTGTTATATTCTCTCTTCCGTTTATAACATCTTTCAAGAAACTCT
TCTTTCATGCAAGTACCGTCTAGAATACCGACAACCGATAGAAGTTCAAT
GGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015670-exon-sc0000215-1575043694:83588..83624 | TCONS_00015670-exon-sc0000215-1575043694:83588..83624 | Clytia hemisphaerica | exon |
| TCONS_00015670-exon-sc0000215-1575043694:74421..74706 | TCONS_00015670-exon-sc0000215-1575043694:74421..74706 | Clytia hemisphaerica | exon |
| TCONS_00015670-exon-sc0000215-1510915933:83588..83624 | TCONS_00015670-exon-sc0000215-1510915933:83588..83624 | Clytia hemisphaerica | exon |
| TCONS_00015670-exon-sc0000215-1510915933:74421..74706 | TCONS_00015670-exon-sc0000215-1510915933:74421..74706 | Clytia hemisphaerica | exon |
| TCONS_00015670-exon-sc0000215-1491911889:83588..83624 | TCONS_00015670-exon-sc0000215-1491911889:83588..83624 | Clytia hemisphaerica | exon |
| TCONS_00015670-exon-sc0000215-1491911889:74421..74706 | TCONS_00015670-exon-sc0000215-1491911889:74421..74706 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000215 | supercontig | sc0000215:74421..83624 - |
Blast
The following BLAST results are available for this feature:
|
