TCONS_00015663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015663
Unique NameTCONS_00015663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015663 ID=TCONS_00015663|Name=TCONS_00015663|organism=Clytia hemisphaerica|type=transcript|length=595bp
ATATACTTGAAATTGTAATATCATAGTATCGTTCAGAAATTTGGTTGAGT
GCAGGTTTGAACCTTTGAGGAACTTTCAGCAGCCGAAGTTTTTGAAGATC
CGCTGCGTTAAACCATATCTGAAATGAAGTTGATATTAGCTGCCCTAGTA
TGCATCATCTACATATCCGATGTCCAGGCAGTCCGTTGTAAAGCCGGATA
CCCAAAACTCGGTAAAGGGGTGACTCCACCGAACTTGCCAGATACGGAAT
GTTCCGGACCGAATTNGATACCCAAAACTCGGTAAAGGGGTGACTCCACC
GAACTTGCCAGATACTGAATGTTCCGGACCGAATTTCGAAGACTTGTGCT
ATGTGATGTTTACAGACTACAATCTCCCTGGATTCGACAAAGAAGCTTAT
ACCTATGGCTGTATTCTTAAGGGATCGTTGGGTAATTGCAACAAAACGTT
CAAAAGATATGGTGTCGAGAATCATTACTGCTGTTGTAAAGATGCTGGAT
GTAACGATGTCGACTTTGCACGAAATTGCCATGAAAAACGGAAAAGAAGA
AGATAGAAAGAAGACATTTGTTTCAAagaaaagattctaaaaaac
Run BLAST on NCBI

transcript from alignment at sc0000215:282987..284520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015663 ID=TCONS_00015663|Name=TCONS_00015663|organism=Clytia hemisphaerica|type=transcript|length=1534bp|location=Sequence derived from alignment at sc0000215:282987..284520+ (Clytia hemisphaerica)
ATATACTTGAAATTGTAATATCATAGTATCGTTCAGAAATTTGGTTGAGT
GCAGGTTTGAACCTTTGAGGAACTTTCAGCAGCCGAAGTTTTTGAAGGTG
AGCTGTAGATTGATTTTATCCCCGctactttttttctttgaatgttAAGT
CTTCAATCTTTTGGCGAAAGGATTTCTTACGTAGTTACTATTTTGTATTA
GAGCAAATAAATTTGTCAAAAGCTTGATTGATGTTTTTAGAATTTGAACC
CTGCAATACATTTTCATCTATTAAAAACATATCTAATCGATAGTTAAAGA
CTGTATCCAGTCTTTTGGTCTTTACTATTTGCAATCAAGCAATTAAGTAA
TGaataaaataaacttaaatCACTCTATTTTAGATCCGCTGCGTTAAACC
ATATCTGAAATGAAGTTGATATTAGCTGCCCTAGTATGCATCATCTACAT
ATCCGATGTCCAGGCAGTCCGTTGTAAAGCCGGATACCCAAAACTCGGTA
AAGGGGTGACTCCACCGAACTTGCCAGATACGGAATGTTCCGGACCGAAT
TNGATACCCAAAACTCGGTAAAGGGGTGACTCCACCGAACTTGCCAGATA
CTGAATGTTCCGGACCGAATTTCGAAGACTTGTGCTATGTGATGTTTACA
GACTACAATCTCCCTGGATTCGACAAAGAAGCTTATACCTATGGCTGTAT
TCTTAAGGTACACCATCATGTGACCTAGACCtattgttattgttattgtC
GAATTATCAGATCATTTCATCGGTAGACTTCCTTTTTTCTTTCGAAAttc
gttttctttttagaattttcgtgattttgaaCACTTTCTTTCTCTCGATT
TCGTCAGCGATGACGAtgagttttgatatttctttcagtcagttttttat
gtttattaGAAAAGTTCTTTGCataattgctgacgtcagcatcaCCACTA
AAGTACATTCTTGTTCTGCTTGCTATTTTTCAATTCTAGAATACCGTGCA
TAATATTGATAATTTTGGAATCACTACTACTGAAAAACAAGCTCCCCCTT
CCTCCTTACTACAATGCTCATGGATCGGTCAGCCTCTGTAATTTTTCGGC
CGGAATACCAGCTCAGCCAAGTAGTAAGGGGAAGGGGGAATACCTGATGA
AATTAACttaattcttaaaaattatcATATATTATGCACGGTATTCTGGC
AAATTGTTAACCGTTGAGAATCTACTACCAGAtatgtgtaccaaatttca
aaaaaataatacttcACAATTGCTTTGCTTTTGAAGTTAGTGAAGCGATC
TAACTAAGTTTGCCTCCCAGCATTTCCGGTCCTTCATTGCTCCTCTACCT
TTTTCTCCAGGGATCGTTGGGTAATTGCAACAAAACGTTCAAAAGATATG
GTGTCGAGAATCATTACTGCTGTTGTAAAGATGCTGGATGTAACGATGTC
GACTTTGCACGAAATTGCCATGAAAAACGGAAAAGAAGAAGATAGAAAGA
AGACATTTGTTTCAAagaaaagattctaaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008740XLOC_008740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015663-exon-sc0000215-1491911889:282987..283083TCONS_00015663-exon-sc0000215-1491911889:282987..283083Clytia hemisphaericaexon
TCONS_00015663-exon-sc0000215-1510915933:282987..283083TCONS_00015663-exon-sc0000215-1510915933:282987..283083Clytia hemisphaericaexon
TCONS_00015663-exon-sc0000215-1575043694:282987..283083TCONS_00015663-exon-sc0000215-1575043694:282987..283083Clytia hemisphaericaexon
TCONS_00015663-exon-sc0000215-1491911889:283370..283693TCONS_00015663-exon-sc0000215-1491911889:283370..283693Clytia hemisphaericaexon
TCONS_00015663-exon-sc0000215-1510915933:283370..283693TCONS_00015663-exon-sc0000215-1510915933:283370..283693Clytia hemisphaericaexon
TCONS_00015663-exon-sc0000215-1575043694:283370..283693TCONS_00015663-exon-sc0000215-1575043694:283370..283693Clytia hemisphaericaexon
TCONS_00015663-exon-sc0000215-1491911889:284347..284520TCONS_00015663-exon-sc0000215-1491911889:284347..284520Clytia hemisphaericaexon
TCONS_00015663-exon-sc0000215-1510915933:284347..284520TCONS_00015663-exon-sc0000215-1510915933:284347..284520Clytia hemisphaericaexon
TCONS_00015663-exon-sc0000215-1575043694:284347..284520TCONS_00015663-exon-sc0000215-1575043694:284347..284520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:282987..284520 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.551468	0.358512	1.45693	0.203626	0.371842	0.19589	0.472666	0.331878	0.0774518	0.767493	0.465592	0.183637	81.2993	73.8287	27.2955	77.2912	11.7986	16.4778	353.687	397.713	94.6412	87.6441	45.2096	68.0244	42.3342	39.8079	0.630143	0.134501	0.408057	0.103936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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