TCONS_00015652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015652
Unique NameTCONS_00015652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015652 ID=TCONS_00015652|Name=TCONS_00015652|organism=Clytia hemisphaerica|type=transcript|length=1527bp
ATTACAGCTAAAGAACTCTCTTAATTGATATCAAGAAAACAACTTCTTGG
AGATTGACGTTCCATGAACTTACTTACAACTTGAAGTTTATAAAACTACA
TGTGTTGCGATACGTTTTTGATTTCGAGAGCCAAAATCGTCATCCGTTCA
TTACGTCAGCGAAAATAAAACACTTGAAGAAGCAAGATTTTCGACCATTT
AACAACTTAATTGAATTGAGTTGAAAGAGTTGTTTTGATATTAAGTTATG
GAGTCTCTTGTAGTTatgatgtttttgatttttcttcctttGATAAATGG
TCTCTCGATCACTGAAGACATAGCAGAACAGattgaagttgaaaatgaag
ACAGCTCATTGATCCATTTCGAAAGTGGTCAACAGAATAATGACCAAGGA
AAATCATCAAAGAACTTAGATAACCTTTTACAGAAACCAACGCAAATTTG
GAATGTTCCTAACGAGCTATCTATACACCCATCATCATGCGAGCAATATA
CATACTGTGAGAGAGAAGACCGACCAGCAGAGGGAGTTTACAGACGTTTA
CCCATCTACCCTTGGTGGTATTATTCATGTGAGGGTAACAAAGTCAAATG
TCAACCATGCCCCTCCACTGAAGATCTCGATCATCCAACTTTATTCTTCT
CAGAAAGATGCCAGAAATgtatttcagaatttaaagACGAGAAGATCGCA
TGCCCACCAAAAACTAAAGAAGATGAGAAAACAAGCAACTGGacgaaatt
gaaattgatgttTTGGTAAATTAGTGGAATAATGATATTAACATCACGAA
AAAAACGAAAAcagattttacattttacaattttattaccAAGAATCTTT
TNATGAGAAAACAAGCAACTGGacgaaattgaaattgatgttTTGGTAAA
TTAGTGGAATAATGATATTAACATCACGAAAAAAACGAAAAcagatttta
cattttacaattttattaccaacaatcttttatatttttatttattcttc
aaaagattttattaatttattctaatttttttaatagcgaacaaggaaaa
aatcattttagggTACCTGGTATTTTCTGGTATTTCCaagagagaaattt
caaatacaCACAAAACCAACGTTGAATTCTCAAATTGTTTGGACTTAATT
CTACTAAGTtattgttttagaaaatttaattctgtttaaaagaaaatatt
tttgttttatcaatttttatatATACAGATATTgtaaataataacaaaaa
cagtttttatcttcattcaaaatatattattttcaagCTTAATCCAAGAA
GAAAAATAGACCCCCCCCTAAGAAGGATAGCCGATGGTCAAAGGCCAAAA
TACTTTTGAAGGATTTCATAAGTTTAGGAGAGAGAAGGAGCATAATGTCT
TGGTGACCAGGTGATATTGTAAAATCCAAATCTAAATTTCTACAGAGAGC
TCAAGGAGGATTTTCAATGAATTCAAACGAACAAATCTTTGAGATTAGTC
AAAAACAATATCTCATGTCACAAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000215:87217..91137+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015652 ID=TCONS_00015652|Name=TCONS_00015652|organism=Clytia hemisphaerica|type=transcript|length=3921bp|location=Sequence derived from alignment at sc0000215:87217..91137+ (Clytia hemisphaerica)
ATTACAGCTAAAGAACTCTCTTAATTGATATCAAGAAAACAACTTCTTGG
AGATTGACGTTCCATGAACTTACTTACAACTTGAAGTTTATAAAACTACA
TGTGTTGCGATACGTTTTTGATTTCGAGAGCCAAAATCGTCATCCGTTCA
TTACGTCAGCGAAAATAAAACACTTGAAGAAGCAAGATTTTCGACCATTT
AACAACTTAATTGAATTGAGTTGAAAGAGTTGTTTTGATATTAAGTTATG
GAGTCTCTTGTAGTTatgatgtttttgatttttcttcctttGATAAATGG
TAAGCTGTGGAGAGTTTTTCATTTCTGTTGGGGGTAATTGCAAAGAAAAA
CAACATCGTAGCTTCTTCTATGATCGCTGTCTTTGAGAATCATTGTCTTT
GAGAAGATTTtaaccttctttttttaatcatgGTCATTTTCTTAAACCTC
AAACTCATCATGGGTCTCGAACAATCCAATTAGCATTGAGATTAGTAAGG
TAAAGAAAGAAGGGCTTCAACTAATGAATAGTCTGATTAATAGCCTTAAA
AGTTTTGCAGCAGTGTCGTCCTTAAGCAGTATTTTTAAAAAAGCTATTag
tcaggaagaaaagacactttttctTTCTGACTGACATCGCTCTACTTATG
TATCGAGCACTGTATacgccccccagcggtttgcgtgaatgcgtgaatgc
gtgaatgggcattttcggttgcgtgaatgcgtgaattgaaaaaacttgcg
tgaatgtgaaaatccactttttaactgcgtgaatgcgtgaatctgggcta
ttttttgcgtgaatacgtgaattttcccttttttccactgATTGTGTGCA
gtgttcccgattttccaatgtttctccgatttttcccgaaaattttccga
ttttctgaaaaattgggttattgcgtgaaactcgaggaaaatttgcgtga
ttgcgtggtttgagggtccgctggggggggggtggtGATGCTCGTATACT
GAAGAAATACTTAAAGAAGCTATTAGAAGTTCTGACCGAATCTATGACCC
ACTACGAGCTAAACATCATCTAAAGAATGATATTAAAATCATACGCCATA
ACAAAAAACAATCGTTCAAATCTTCCTTTGCAGGTCTCTCGATCACTGAA
GACATAGCAGAACAGattgaagttgaaaatgaagACAGCTCATTGATCCA
TTTCGAAAGTGGTCAACAGAATAATGACCAAGGAAAATCATCAAAGAACT
TAGATAACCTTTTACAGAAACCAACGCAAATTTGGAATGTTCCTAACGAG
CTATCTATACACCCATCATCATGTAAGGACATTCCTTTGTCAATCAAATA
CTGTTTGACGCTTGTTTCACACCTTTTATTTATTAAAACTAAAAGCCATA
AATGATTAACTCAGTGAAAGATACGAACATGATTCAATCGTTGTGAGAGG
AGCTTAAAGTATTCTTGATTTTCACCATCGTATCAAATCTTCTTTGACTT
ATTCAATCGTAAACACTTCATATTAAGTCTGATAACCATAAATGGTTAAT
TTAGTTTACAACTGATTTGAGGGGGATTCGATGACAGCTTCATTGTGAga
cgaatacacgtttttttttatataagaacatcaaaaattttcgaagcctt
cggatgttcttagttttttggatttgaagcctaaaaatgttcttaaaatg
ttcttattttcagcattttttgagaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNcaaagccttagtatgttcttagaat
gttcttaaatttttgggcctcgaagccttatgttcttatatagtttgttc
ttataaaaaaaaaacgtgtaagtcgGGAATTTATAATATCGACAATTTTG
ACCAACTTTATCAAAACTTTCATTTCCAGGCGAGCAATATACATACTGTG
AGAGAGAAGACCGACCAGCAGAGGGAGTTTACAGACGTTTACCCATCTAC
CCTTGGTGGTATTATTCATGTGAGGGTAACAAAGTCAAATGTCAACCATG
CCCCTCCACTGAAGATCTCGATCATCCAACTTTATTCTTCTCAGAAAGAT
GCCAGAAATgtatttcagaatttaaaggtaaGTGAGACGGAGAAAGGAAT
GAGCTTATGTCTTGGGATGCTAAAATCCTCATTAGGCTTGTCTAGAACAA
GCTTGGGGTAGACTAAAACACATTTTTCATCATGCTAAGTTTACTGGCAA
TACAAGAAAACATTGCATTCGTCTTTTGCACTACTGTTTTTTACACACTT
TTGGTTTTTGCTTATAACGAGACATATCTGACGGTGAGGGAGACATTTTG
TTTCCTTCGATACAGTACATACATCTAAAGTACGCAAAAGGTTTTTCACG
TATAGATGCCAACGACGAAAACACCGTCTCTCTCGGGTGCTCTTTGAAGA
CACCCGTCACAAAAAGACAAGTGAGCGACTGCTTAATTAAATCTAATCAA
TATTCATTTTCGTATTCTTTCTACATTTAGACGAGAAGATCGCATGCCCA
CCAAAAACTAAAGAAGGTAATTAAATTTCTCTCTATTTTTGTAGTTTTCG
ATCGCTTGCCCATTCATGTTATTAATATACCGTTGATTGAAATGGGCTAA
TTTCGTTTGATTCGAAGAGCGCATCTCGCTTTTAAAAAGAAGTCGTTAGG
AGGAACTTATGCGTTAAGTTCATTACCGGAGTAATTAGTCATTAAGAATC
TAATTATCCAGGAAAGAATGGAGGATATTATAAATTATAAGAGAATGTCT
ATCGAGAATTAAAGACTCGGTTAAATATCTGCTTTAGGGACGTCCCGTCC
ATCCGGTTATATAGCCTATAAGAACACATTATCACTTTGAAAGCACCTAT
AAATTCACATAACGAGTTTAAAAATTACATAAaccaaaattgttaatttt
tttttttgcaccatAGATGAGAAAACAAGCAACTGGacgaaattgaaatt
gatgttTTGGTAAATTAGTGGAATAATGATATTAACATCACGAAAAAAAC
GAAAAcagattttacattttacaattttattaccAAGAATCTTTTNATGA
GAAAACAAGCAACTGGacgaaattgaaattgatgttTTGGTAAATTAGTG
GAATAATGATATTAACATCACGAAAAAAACGAAAAcagattttacatttt
acaattttattaccaacaatcttttatatttttatttattcttcaaaaga
ttttattaatttattctaatttttttaatagcgaacaaggaaaaaatcat
tttagggTACCTGGTATTTTCTGGTATTTCCaagagagaaatttcaaata
caCACAAAACCAACGTTGAATTCTCAAATTGTTTGGACTTAATTCTACTA
AGTtattgttttagaaaatttaattctgtttaaaagaaaatatttttgtt
ttatcaatttttatatATACAGATATTgtaaataataacaaaaacagttt
ttatcttcattcaaaatatattattttcaagCTTAATCCAAGAAGAAAAA
TAGACCCCCCCCTAAGAAGGATAGCCGATGGTCAAAGGCCAAAATACTTT
TGAAGGATTTCATAAGTTTAGGAGAGAGAAGGAGCATAATGTCTTGGTGA
CCAGGTGATATTGTAAAATCCAAATCTAAATTTCTACAGAGAGCTCAAGG
AGGATTTTCAATGAATTCAAACGAACAAATCTTTGAGATTAGTCAAAAAC
AATATCTCATGTCACAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008731XLOC_008731Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015652-exon-sc0000215-1491911889:87217..87515TCONS_00015652-exon-sc0000215-1491911889:87217..87515Clytia hemisphaericaexon
TCONS_00015652-exon-sc0000215-1510915933:87217..87515TCONS_00015652-exon-sc0000215-1510915933:87217..87515Clytia hemisphaericaexon
TCONS_00015652-exon-sc0000215-1575043694:87217..87515TCONS_00015652-exon-sc0000215-1575043694:87217..87515Clytia hemisphaericaexon
TCONS_00015652-exon-sc0000215-1491911889:88350..88538TCONS_00015652-exon-sc0000215-1491911889:88350..88538Clytia hemisphaericaexon
TCONS_00015652-exon-sc0000215-1510915933:88350..88538TCONS_00015652-exon-sc0000215-1510915933:88350..88538Clytia hemisphaericaexon
TCONS_00015652-exon-sc0000215-1575043694:88350..88538TCONS_00015652-exon-sc0000215-1575043694:88350..88538Clytia hemisphaericaexon
TCONS_00015652-exon-sc0000215-1491911889:89296..89493TCONS_00015652-exon-sc0000215-1491911889:89296..89493Clytia hemisphaericaexon
TCONS_00015652-exon-sc0000215-1510915933:89296..89493TCONS_00015652-exon-sc0000215-1510915933:89296..89493Clytia hemisphaericaexon
TCONS_00015652-exon-sc0000215-1575043694:89296..89493TCONS_00015652-exon-sc0000215-1575043694:89296..89493Clytia hemisphaericaexon
TCONS_00015652-exon-sc0000215-1491911889:89897..89932TCONS_00015652-exon-sc0000215-1491911889:89897..89932Clytia hemisphaericaexon
TCONS_00015652-exon-sc0000215-1510915933:89897..89932TCONS_00015652-exon-sc0000215-1510915933:89897..89932Clytia hemisphaericaexon
TCONS_00015652-exon-sc0000215-1575043694:89897..89932TCONS_00015652-exon-sc0000215-1575043694:89897..89932Clytia hemisphaericaexon
TCONS_00015652-exon-sc0000215-1491911889:90333..91137TCONS_00015652-exon-sc0000215-1491911889:90333..91137Clytia hemisphaericaexon
TCONS_00015652-exon-sc0000215-1510915933:90333..91137TCONS_00015652-exon-sc0000215-1510915933:90333..91137Clytia hemisphaericaexon
TCONS_00015652-exon-sc0000215-1575043694:90333..91137TCONS_00015652-exon-sc0000215-1575043694:90333..91137Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:87217..91137 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.217256	0	23.6003	18.1666	13.8157	13.1724	6.95522	10.0522	3.40654	3.90874	3.3528	1.10712	1.52327	2.32921	1.00031	1.43167	1.5763	0.654843	0.295823	0.158417	0	0.326753	0.751413	0.490067	0.124018	0.0393911	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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