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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015643 ID=TCONS_00015643|Name=TCONS_00015643|organism=Clytia hemisphaerica|type=transcript|length=980bp
AANGGCTGtttatttgatcgttcttcgGGCTGTTAATTTGATCGTTCTTC
GGGCTGTTCTTTTGTTCGTTCTTCGGGCTGTTCATTTGATCGTTCTTCAG
GCTGTTCTTTTGTTCGTTCTTCGGGCTGTTTATTTGATCGTTCTTTGGGC
TTTTCAGCTTTGGTCAATAATATATCCACTCTTCTGATGGCGTCGACGTC
TACGACAATGCTTTTGGTTTCTTTCCTGTTTTTATTCTTCTTCAACTCTA
CTTTTGGTGTTGATGTTATGATCATAACAGCAATGTAATACCTTGCATCA
CGACAATCTTGTGGAGATAAATGAATCAAGGAGTTATTTATGATGTTAAG
GGAATTGATGCACGCGTGAACTCCACAATCCACGACGCCTTCTTGCTTAG
CAATGTCTGTTCTTGCAACAAAAACCCATTCGCTCTTTGTTGTTTCTTTA
TGTGTCACACTGTACAGGATGTGTTTCATAAAGCGGAAAACGGTTGACAT
GATCTCGGCATTGACAATGTGAAACGAGTCAAGATAAtgaatttgttttc
tttgtaAATAAACAACTATGATGGACCAATGATTTCCAGCACGGTGGTGG
ATTGGCATGATTAGAAGTCTTTTTGTTACAATTGGCTCATAGTTTTCTAG
ATTAAGATGGATAGATGATGTTCCAGCTTCAAGAGCATTATAAACGTGGC
TGTTAAAAACATAGATGTCGTCTTTGTCGTGGGAGATTGCTAGCAAATAC
GCGTTTATTACGTCACCTTTCAAGCATCTATCGGGAATAAGACTTCTTTC
TCAAGAACCAAAATAGATgtgaacttgattttttctgtaaaaggtcacta
ttgagtatatctattgtccacactatgtttgggtcacgtgccattcgatc
caagttggccagagcACTAAAATCGGGGTTTCGACAGATTCGCCTATGTC
AAGCAAAAGTGGTTTCCGCGCAGTTTCTCA Run BLAST on NCBI protein sequence of TCONS_00015643-protein >TCONS_00015643-protein ID=TCONS_00015643-protein|Name=TCONS_00015643-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MPIHHRAGNHWSIIVVYLQRKQIHYLDSFHIVNAEIMSTVFRFMKHILYS
VTHKETTKSEWVFVARTDIAKQEGVVDCGVHACINSLNIINNSLIHLSPQ
DCRDARYYIAVMIITSTPKVELKKNKNRKETKSIVVDVDAIRRVDILLTK
AEKPKERSNKQPEERTKEQPEERSNEQPEERTKEQPEERSN Run BLAST on NCBI transcript from alignment at sc0000214:281253..282232 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015643 ID=TCONS_00015643|Name=TCONS_00015643|organism=Clytia hemisphaerica|type=transcript|length=980bp|location=Sequence derived from alignment at sc0000214:281253..282232 (Clytia hemisphaerica)
TGAGAAACTGCGCGGAAACCACTTTTGCTTGACATAGGCGAATCTGTCGA
AACCCCGATTTTAGTgctctggccaacttggatcgaatggcacgtgaccc
aaacatagtgtggacaatagatatactcaatagtgaccttttacagaaaa
aatcaagttcacATCTATTTTGGTTCTTGAGAAAGAAGTCTTATTCCCGA
TAGATGCTTGAAAGGTGACGTAATAAACGCGTATTTGCTAGCAATCTCCC
ACGACAAAGACGACATCTATGTTTTTAACAGCCACGTTTATAATGCTCTT
GAAGCTGGAACATCATCTATCCATCTTAATCTAGAAAACTATGAGCCAAT
TGTAACAAAAAGACTTCTAATCATGCCAATCCACCACCGTGCTGGAAATC
ATTGGTCCATCATAGTTGTTTATTtacaaagaaaacaaattcaTTATCTT
GACTCGTTTCACATTGTCAATGCCGAGATCATGTCAACCGTTTTCCGCTT
TATGAAACACATCCTGTACAGTGTGACACATAAAGAAACAACAAAGAGCG
AATGGGTTTTTGTTGCAAGAACAGACATTGCTAAGCAAGAAGGCGTCGTG
GATTGTGGAGTTCACGCGTGCATCAATTCCCTTAACATCATAAATAACTC
CTTGATTCATTTATCTCCACAAGATTGTCGTGATGCAAGGTATTACATTG
CTGTTATGATCATAACATCAACACCAAAAGTAGAGTTGAAGAAGAATAAA
AACAGGAAAGAAACCAAAAGCATTGTCGTAGACGTCGACGCCATCAGAAG
AGTGGATATATTATTGACCAAAGCTGAAAAGCCCAAAGAACGATCAAATA
AACAGCCCGAAGAACGAACAAAAGAACAGCCTGAAGAACGATCAAATGAA
CAGCCCGAAGAACGAACAAAAGAACAGCCCGAAGAACGATCAAATTAACA
GCCcgaagaacgatcaaataaaCAGCCNTT Coding sequence (CDS) from alignment at sc0000214:281253..282232 >TCONS_00015643 ID=TCONS_00015643|Name=TCONS_00015643|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at sc0000214:281253..282232 (Clytia hemisphaerica)
ATGCCAATCCACCACCGTGCTGGAAATCATTGGTCCATCATAGTTGTTTA
TTtacaaagaaaacaaattcaTTATCTTGACTCGTTTCACATTGTCAATG
CCGAGATCATGTCAACCGTTTTCCGCTTTATGAAACACATCCTGTACAGT
GTGACACATAAAGAAACAACAAAGAGCGAATGGGTTTTTGTTGCAAGAAC
AGACATTGCTAAGCAAGAAGGCGTCGTGGATTGTGGAGTTCACGCGTGCA
TCAATTCCCTTAACATCATAAATAACTCCTTGATTCATTTATCTCCACAA
GATTGTCGTGATGCAAGGTATTACATTGCTGTTATGATCATAACATCAAC
ACCAAAAGTAGAGTTGAAGAAGAATAAAAACAGGAAAGAAACCAAAAGCA
TTGTCGTAGACGTCGACGCCATCAGAAGAGTGGATATATTATTGACCAAA
GCTGAAAAGCCCAAAGAACGATCAAATAAACAGCCCGAAGAACGAACAAA
AGAACAGCCTGAAGAACGATCAAATGAACAGCCCGAAGAACGAACAAAAG
AACAGCCCGAAGAACGATCAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015643-exon-sc0000214-1491911889:281253..282232 | TCONS_00015643-exon-sc0000214-1491911889:281253..282232 | Clytia hemisphaerica | exon |
| TCONS_00015643-exon-sc0000214-1510915933:281253..282232 | TCONS_00015643-exon-sc0000214-1510915933:281253..282232 | Clytia hemisphaerica | exon |
| TCONS_00015643-exon-sc0000214-1575043694:281253..282232 | TCONS_00015643-exon-sc0000214-1575043694:281253..282232 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000214 | supercontig | sc0000214:281253..282232 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003653 | Peptidase_C48_C |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008234 | cysteine-type peptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0008234 |
cysteine-type peptidase activity |
Blast
The following BLAST results are available for this feature:
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