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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015625 ID=TCONS_00015625|Name=TCONS_00015625|organism=Clytia hemisphaerica|type=transcript|length=973bp
CTGTGTCAAAGAGTCACCCATCCATGTAGAAACAACCAAAACCACCTACG
CCCCAAAGACGACAACCACGCACGCTCCAAAAACCACAACCACCACACAC
GCTCCAAAAACCACCACCACAGACTCTCCAAAAACAACAACCACACACGC
CCCAAAAACCACAACCACCCACGCCCCAAAAACAACCAACCACACCCCAA
AAACAACCACAACCACACACGCCCCAAAGACTACAACAACGCACGCCCCA
AAAACCACAACCCTTGCGCACACAACAGTAACAACAACACCAACGACCAC
CTCTACAACTCCAGCAACGACCAAGCAAACTGAAGAAAacccaGAACCGT
GCAAGCGACTTGGTTTGGAATGTGTTGTCTGTTCACAATGCGGTGAAAAT
GGATTTTGTATCACCAATCTCGATTTACGAAATTCCAACATGGTTTGTTT
ATGTCGATATGGTTTCACTGGAAGTCGAGCTAAATTTGTTCCTCAGCATT
TGGAAACAAGTACATTTACCAAAAATCGAATAAGAGCTGATTCTTGTGAA
CTCAAATGCAATTATTCGCCTCATAACAGaaacCCTCACTGTGTCAAAGA
GTCACCCATCCATGTAGAAACAACCAAAACCACCTACGCCCCAAAGACGA
CAACCACGCACGCTCCAAAAACCACAACCACCACACACGCTCCAAAAACC
ACCACCACAGACTCTCCAAAAACAACAACCACACACGCCCCAAAAACCAC
AACCACCCACGCCCCAAAAACAACCAACCACACCCCAAAAACAACCACAA
CCACACACGCTCCAAAGACAACAACCACAACACCAACGACCACCTCTACA
ACAATAGTAACGAACAAGCAAACTGAAAACTCAGAACCGTGCAAGCGACT
TGGTTTGGAATGTGTTGTCTGTTCACATTGCGGTGAAAATGGATTTTGTA
TCACCAATCTCGATTTACGAAAT Run BLAST on NCBI transcript from alignment at sc0000214:394049..396019+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015625 ID=TCONS_00015625|Name=TCONS_00015625|organism=Clytia hemisphaerica|type=transcript|length=1971bp|location=Sequence derived from alignment at sc0000214:394049..396019+ (Clytia hemisphaerica)
CTGTGTCAAAGAGTCACCCATCCATGTAGAAACAACCAAAACCACCTACG
CCCCAAAGACGACAACCACGCACGCTCCAAAAACCACAACCACCACACAC
GCTCCAAAAACCACCACCACAGACTCTCCAAAAACAACAACCACACACGC
CCCAAAAACCACAACCACCCACGCCCCAAAAACAACCAACCACACCCCAA
AAACAACCACAACCACACACGCCCCAAAGACTACAACAACGCACGCCCCA
AAAACCACAACCCTTGCGCACACAACAGTAACAACAACACCAACGACCAC
CTCTACAACTCCAGCAACGACCAAGCAAACTGAAGAAAGTAAGAAACCTT
CCTGTTGAAATTTTCATCGCTGAGGGCTTCTTTTTTACGCCGAAACGATT
TTAATCCGAATACGCAACTTTGCTTACAAAGAGACTTAATCGGCCTTTCG
TTACGTTGTGAATATTAAATGCATCATTTTGAATTCAATCTCGACGCAGT
TCACCAAATTCGACTCTATTAAAAAATGTGTCCATTGTAGCGCATTGTTT
TTCGTgcaatttgaaaacaaaacgcCGTGGAATAACATACTTGAATCCCT
CCtgtatattttacagacccaGAACCGTGCAAGCGACTTGGTTTGGAATG
TGTTGTCTGTTCACAATGCGGTGAAAATGGATTTTGTATCACCAATCTCG
ATTTACGAAATTCCAACATGGTTTGTTTATGTCGATATGGTTTCACTGGA
AGTCGAGCTAAATTTGTTCCTCAGCATTTGGAAACAAGTACATTTACCAA
AAATCGAATAAGAGCTGATTCTTGTGAACTCAAATGCAATTATTCGCCTC
ATAACAGGTATCTAGTCTCTCGTGTTGAAATTTTCGCGATTATTGCAAAT
TGTTAGAATTCGCGAGATTAAATGATTGCAAAactaaattcccgcgaaat
ttggTTATTTCGTTCAAGCTCAGTTATCAAAACTCCCTCATTCTAAAGTT
TTTATAGAAAGGAAGTTTTTAGAAATCAGTAAAACAAATACTTTCACGCT
TTACTTTAAGAGAAAgccaggaaaagttttttactCTCTCGTcatgattc
gcgaaattaaatctccGCGAAATACAAAAAAATGCAATAATAGCCTGAAT
CACGAAATTTTCTGCCGGGAAAATTTCTGTCGTTATTTTTTGTtatcttt
tatcatttttaagaaacCCTCACTGTGTCAAAGAGTCACCCATCCATGTA
GAAACAACCAAAACCACCTACGCCCCAAAGACGACAACCACGCACGCTCC
AAAAACCACAACCACCACACACGCTCCAAAAACCACCACCACAGACTCTC
CAAAAACAACAACCACACACGCCCCAAAAACCACAACCACCCACGCCCCA
AAAACAACCAACCACACCCCAAAAACAACCACAACCACACACGCTCCAAA
GACAACAACCACAACACCAACGACCACCTCTACAACAATAGTAACGAACA
AGCAAACTGAAAGTAAGAAATTTTCTTGTTAGAATTTTCCCATGAGTAGT
GGAGAAGAAAGAACCTCAAAACATAAGTTCAGGTCAAAATTTAAAGCTAT
GAATGAATCCAAAGTAACCTTTCTCAACTAAATATTCCAATGTTATGCAA
ATCAGATTCTTTGCTCTGTCTAAATATATATATAGTCGAACCTCAAAATA
TGACTTCTTTATGAGCGTGTCAATACAATGGCTTTAGATATTGACACATT
GTTTCCAGAGGTGCTCCCTCTCAAGGATCCCTTTAAGTAATAGGGTTTGC
AAGATGTCCGTGTATTTTACGGGTCTATACCTATTCAAGGGACactttga
gaaattctttcCGGTATATTTTACAGACTCAGAACCGTGCAAGCGACTTG
GTTTGGAATGTGTTGTCTGTTCACATTGCGGTGAAAATGGATTTTGTATC
ACCAATCTCGATTTACGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015625-exon-sc0000214-1491911889:394049..394386 | TCONS_00015625-exon-sc0000214-1491911889:394049..394386 | Clytia hemisphaerica | exon |
| TCONS_00015625-exon-sc0000214-1510915933:394049..394386 | TCONS_00015625-exon-sc0000214-1510915933:394049..394386 | Clytia hemisphaerica | exon |
| TCONS_00015625-exon-sc0000214-1575043694:394049..394386 | TCONS_00015625-exon-sc0000214-1575043694:394049..394386 | Clytia hemisphaerica | exon |
| TCONS_00015625-exon-sc0000214-1491911889:394665..394905 | TCONS_00015625-exon-sc0000214-1491911889:394665..394905 | Clytia hemisphaerica | exon |
| TCONS_00015625-exon-sc0000214-1510915933:394665..394905 | TCONS_00015625-exon-sc0000214-1510915933:394665..394905 | Clytia hemisphaerica | exon |
| TCONS_00015625-exon-sc0000214-1575043694:394665..394905 | TCONS_00015625-exon-sc0000214-1575043694:394665..394905 | Clytia hemisphaerica | exon |
| TCONS_00015625-exon-sc0000214-1491911889:395262..395560 | TCONS_00015625-exon-sc0000214-1491911889:395262..395560 | Clytia hemisphaerica | exon |
| TCONS_00015625-exon-sc0000214-1510915933:395262..395560 | TCONS_00015625-exon-sc0000214-1510915933:395262..395560 | Clytia hemisphaerica | exon |
| TCONS_00015625-exon-sc0000214-1575043694:395262..395560 | TCONS_00015625-exon-sc0000214-1575043694:395262..395560 | Clytia hemisphaerica | exon |
| TCONS_00015625-exon-sc0000214-1491911889:395925..396019 | TCONS_00015625-exon-sc0000214-1491911889:395925..396019 | Clytia hemisphaerica | exon |
| TCONS_00015625-exon-sc0000214-1510915933:395925..396019 | TCONS_00015625-exon-sc0000214-1510915933:395925..396019 | Clytia hemisphaerica | exon |
| TCONS_00015625-exon-sc0000214-1575043694:395925..396019 | TCONS_00015625-exon-sc0000214-1575043694:395925..396019 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000214 | supercontig | sc0000214:394049..396019 + |
Blast
The following BLAST results are available for this feature:
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