|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015622 ID=TCONS_00015622|Name=TCONS_00015622|organism=Clytia hemisphaerica|type=transcript|length=1067bp
aaaattactcTTAAATCCTTCCTAAGCCTTCACATCAACAGACCGGAAAT
TGTCCGCAAACAGGATCACTtaaaaatttgtaatactttacAAGTTGTTA
TATTTAGCGTGTATAATTAGCAGATAATGTCCTTGCTACCTAAATATGTC
GTTTGGCTTTTCATTGGTACTCATCCTGGATGATCCAAAGGCTTTAGATT
TTCGGGTATAAAACCTTTCACCCAACTTCATTCAACTAGTGAATTTCAAT
CTACTTAAACATAACCTTGTGTTTGTTAAGCTCTCTCAGTTTTTGCTGAA
TTCAATTTTTCCGAAGCAGGGAATTTTCGAAGCAgcaaaaatgagatttt
tgaaTACGATTTTTGTTAGCCTTTTAGTGGTTACTATAGCAACAGGGCTT
GTTGACGCGAGTAATATTGAGTTCTGTGAAGGGACTGGATACCAGTGTTC
CAGGCATGCACAATGCTGGCCTGGCGGATGGCGTATTGATGACATTGTTA
CGGGACCGAAATGTTTGTGTAAATATGGTTGGGTTGGCAACAATGCTGTT
TATGACAACAACCCGTTGTCAAGCAAGATGAACTTAATCCGTGCGGATGG
GTGCTCCGTGGCTTGCCATTATACACCTTATGTCAGAAATACCCAATGTG
CATCAGAGGGATTACCTACAACCACGGCGACGACTACCACCCCTACAACC
ACCACCCAACCGCCTCTCAACACCCAAGCAAACACACCCTTGACACAAAA
GCCAGTCATAGTTACGCCCGTTGGTAATAACAACCCAAACAATCCATTAA
CTTGTACCGCCCTTGGTTTGGAATGTACGCGATGTGACGATTTATGTGGC
GTTGGGGGATGGTGCGTGCTAAACACGGACTTTCTACCACGTTGTCTTTG
TGATTATGGATTCACGGGCTCACAAAGTGTTTACATCACGGGAGCGACAG
GTTATACAACGTTGAGCTTGAACCGTGTGCGTGCGTTTGATtgtaaaaca
aaatgtttttattcacCTTATGTCAGAAATCCACGATGCGCAAGTGAAAT
GACAACGACCACCCCAC Run BLAST on NCBI protein sequence of TCONS_00015622-protein >TCONS_00015622-protein ID=TCONS_00015622-protein|Name=TCONS_00015622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MRFLNTIFVSLLVVTIATGLVDASNIEFCEGTGYQCSRHAQCWPGGWRID
DIVTGPKCLCKYGWVGNNAVYDNNPLSSKMNLIRADGCSVACHYTPYVRN
TQCASEGLPTTTATTTTPTTTTQPPLNTQANTPLTQKPVIVTPVGNNNPN
NPLTCTALGLECTRCDDLCGVGGWCVLNTDFLPRCLCDYGFTGSQSVYIT
GATGYTTLSLNRVRAFDCKTKCFYSPYVRNPRCASEMTTTTP Run BLAST on NCBI transcript from alignment at sc0000214:385255..387548+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015622 ID=TCONS_00015622|Name=TCONS_00015622|organism=Clytia hemisphaerica|type=transcript|length=2294bp|location=Sequence derived from alignment at sc0000214:385255..387548+ (Clytia hemisphaerica)
aaaattactcTTAAATCCTTCCTAAGCCTTCACATCAACAGACCGGAAAT
TGTCCGCAAACAGGATCACTtaaaaatttgtaatactttacAAGTTGTTA
TATTTAGCGTGTATAATTAGCAGATAATGTCCTTGCTACCTAAATATGTC
GTTTGGCTTTTCATTGGTACTCATCCTGGATGATCCAAAGGCTTTAGATT
TTCGGGTATAAAACCTTTCACCCAACTTCATTCAACTAGTGAATTTCAAT
CTACTTAAACATAACCTTGTGTTTGTTAAGCTCTCTCAGTTTTTGCTGAA
TTCAATTTTTCCGAAGCAGGGAATTTTCGAAGCAgcaaaaatgagatttt
tgaaTACGATTTTTGTTAGCCTTTTAGTGGTTACTATAGCAACAGGGCTT
GTTGACGCGAGTAATATTGAGTTCTGTGAAGGGACTGGATACCAGTGTTC
CAGGCATGCACAATGCTGGCCTGGCGGATGGCGTATTGATGACATTGTTA
CGGGACCGAAATGTTTGTGTAAATATGGTTGGGTTGGCAACAATGCTGTT
TATGACAACAACCCGTTGTCAAGCAAGATGAACTTAATCCGTGCGGATGG
GTGCTCCGTGGCTTGCCATTATACACCTTATGTCAGGTAACTCGTTCTTA
AATAATAACAAACTGTTTCAAGttgattaaatattttcataaaaactgCG
CACTTTCTCTCACatgaaaaatttcttccaaaataTCCTCCCGCTTTCAA
TTGCTCACAATACTGTAAAAGTTTAAAGTGTTTagtttttgcaggttttt
gcTCATTTAATATCGAGCTTCACGGAATAGATTCCCCGATTTCCCATTTT
aacgaaaatttccccgattgaAATTCTCTAGACTTGAAAAACTGACTGAA
CAGAAATTTCATTTGGACTCCGTTGATAGCTTTGCAAATACTATCACGTG
CGACTTTGTTGATCGGGAAAAGAGAACAGTATGAAAATATGGCGTCGTTG
TTTAGTTACCAGGGTTCCAGAAATGACAACCCCTCCCCCAACAGtttaga
acaactttacctgcaaattgaaaacaaatattTGAATTCTGTCagatgca
aaatttcatgaaaactTTCAGAATTCGGTGAAGATTTCAGATTTTGGAAA
AGGAAGTCTGACCAGCGGTAGGTCCCATTGTACCTGATTTGCGTGAGTTA
TTCCTGGGAACTTTTTCTaataaataacattttttattcgACTTTAGAAA
TACCCAATGTGCATCAGAGGGATTACCTACAACCACGGCGACGACTACCA
CCCCTACAACCACCACCCAACCGCCTCTCAACACCCAAGCAAACACACCC
TTGACACAAAAGCCAGTCATAGTTACGCCCGTTGGTAATAACAACCCAAA
CAATCCATTAACTTGTACCGCCCTTGGTTTGGAATGTACGCGATGTGACG
ATTTATGTGGCGTTGGGGGATGGTGCGTGCTAAACACGGACTTTCTACCA
CGTTGTCTTTGTGATTATGGATTCACGGGCTCACAAAGTGTTTACATCAC
GGGAGCGACAGGTTATACAACGTTGAGCTTGAACCGTGTGCGTGCGTTTG
ATtgtaaaacaaaatgtttttattcacCTTATGTCAGGTAAGGTCTGCTA
ATTGGCGATGCCCTTCTATTAAGAGTTTGTATTTTAGCTTGTTATATGCG
CCATTGTAATGGCTCCTgaggacccaacagctgattggttgtaagtgacg
taaatcagtcaatcaatacgtcacttgcagccaatcagctgttgggtccg
tggaagacattgcaatggcgcatatcatgaatagaagcttctaaaatttt
tgccttcggatgtttttaactttctaagttttaagcctatttttattttg
ttcttagcctgttctttatattttggtcattatattcttatataatttgt
tcttataaaaaacgtgtaaccacTTTATTTGAAGTTTTAGAGACATTTTC
AACACTGTATACCTCTATTTTTCTATGCTGAAAACAGTTTTGAAGATTTA
TCTATCCAGGTTAAAGATAGAGGGATCTAGAAAAGCCTGATTACCTTTTC
ACAAGGCACGGTCCtttcaagaagaaaaaagtCCGGCCACTCTTTGTAGT
TTGTAGATCTGACAGACCtgacattttaatttttataaaaaaagcaacaT
TCAGGCTGACTGATTTTCTCATCAACTCTCAAAACTTTTCCATTCTTTTC
TAGAAATCCACGATGCGCAAGTGAAATGACAACGACCACCCCAC Coding sequence (CDS) from alignment at sc0000214:385255..387548+ >TCONS_00015622 ID=TCONS_00015622|Name=TCONS_00015622|organism=Clytia hemisphaerica|type=CDS|length=2178bp|location=Sequence derived from alignment at sc0000214:385255..387548+ (Clytia hemisphaerica)
atgagatttttgaaTACGATTTTTGTTAGCCTTTTAGTGGTTACTATAGC
AACAGGGCTTGTTGACGCGAGTAATATTGAGTTCTGTGAAGGGACTGGAT
ACCAGTGTTCCAGGCATGCACAATGCTGGCCTGGCGGATGGCGTATTGAT
GACATTGTTACGGGACCGAAATGTTTGTGTAAATATGGTTGGGTTGGCAA
CAATGCTGTTTATGACAACAACCCGTTGTCAAGCAAGATGAACTTAATCC
GTGCGGATGGGTGCTCCGTGGCTTGCCATTATACACCTTATGTCAGAAAT
ACCCAATGTGCATCAGAGGGATTACCTACAACCACGGCGACGACTACCAC
CCCTACAACCACCACCCAACCGCCTCTCAACACCCAAGCAAACACACCCT
TGACACAAAAGCCAGTCATAGTTACGCCCGTTGGTAATAACAACCCAAAC
AATCCATTAACTTGTACCGCCCTTGGTTTGGAATGTACGCGATGTGACGA
TTTATGTGGCGTTGGGGGATGGTGCGTGCTAAACACGGACTTTCTACCAC
GTTGTCTTTGTGATTATGGATTCACGGGCTCACAAAGTGTTTACATCACG
GGAGCGACAGGTTATACAACGTTGAGCTTGAACCGTGTGCGTGCGTTTGA
TtgtaaaacaaaatgtttttattcacCTTATGTCAGAAATCCACGATGCG
CAAGTGAAATGACAACGACCACCCCAatgagatttttgaaTACGATTTTT
GTTAGCCTTTTAGTGGTTACTATAGCAACAGGGCTTGTTGACGCGAGTAA
TATTGAGTTCTGTGAAGGGACTGGATACCAGTGTTCCAGGCATGCACAAT
GCTGGCCTGGCGGATGGCGTATTGATGACATTGTTACGGGACCGAAATGT
TTGTGTAAATATGGTTGGGTTGGCAACAATGCTGTTTATGACAACAACCC
GTTGTCAAGCAAGATGAACTTAATCCGTGCGGATGGGTGCTCCGTGGCTT
GCCATTATACACCTTATGTCAGAAATACCCAATGTGCATCAGAGGGATTA
CCTACAACCACGGCGACGACTACCACCCCTACAACCACCACCCAACCGCC
TCTCAACACCCAAGCAAACACACCCTTGACACAAAAGCCAGTCATAGTTA
CGCCCGTTGGTAATAACAACCCAAACAATCCATTAACTTGTACCGCCCTT
GGTTTGGAATGTACGCGATGTGACGATTTATGTGGCGTTGGGGGATGGTG
CGTGCTAAACACGGACTTTCTACCACGTTGTCTTTGTGATTATGGATTCA
CGGGCTCACAAAGTGTTTACATCACGGGAGCGACAGGTTATACAACGTTG
AGCTTGAACCGTGTGCGTGCGTTTGATtgtaaaacaaaatgtttttattc
acCTTATGTCAGAAATCCACGATGCGCAAGTGAAATGACAACGACCACCC
CAatgagatttttgaaTACGATTTTTGTTAGCCTTTTAGTGGTTACTATA
GCAACAGGGCTTGTTGACGCGAGTAATATTGAGTTCTGTGAAGGGACTGG
ATACCAGTGTTCCAGGCATGCACAATGCTGGCCTGGCGGATGGCGTATTG
ATGACATTGTTACGGGACCGAAATGTTTGTGTAAATATGGTTGGGTTGGC
AACAATGCTGTTTATGACAACAACCCGTTGTCAAGCAAGATGAACTTAAT
CCGTGCGGATGGGTGCTCCGTGGCTTGCCATTATACACCTTATGTCAGAA
ATACCCAATGTGCATCAGAGGGATTACCTACAACCACGGCGACGACTACC
ACCCCTACAACCACCACCCAACCGCCTCTCAACACCCAAGCAAACACACC
CTTGACACAAAAGCCAGTCATAGTTACGCCCGTTGGTAATAACAACCCAA
ACAATCCATTAACTTGTACCGCCCTTGGTTTGGAATGTACGCGATGTGAC
GATTTATGTGGCGTTGGGGGATGGTGCGTGCTAAACACGGACTTTCTACC
ACGTTGTCTTTGTGATTATGGATTCACGGGCTCACAAAGTGTTTACATCA
CGGGAGCGACAGGTTATACAACGTTGAGCTTGAACCGTGTGCGTGCGTTT
GATtgtaaaacaaaatgtttttattcacCTTATGTCAGAAATCCACGATG
CGCAAGTGAAATGACAACGACCACCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015622-exon-sc0000214-1491911889:385255..385890 | TCONS_00015622-exon-sc0000214-1491911889:385255..385890 | Clytia hemisphaerica | exon |
| TCONS_00015622-exon-sc0000214-1510915933:385255..385890 | TCONS_00015622-exon-sc0000214-1510915933:385255..385890 | Clytia hemisphaerica | exon |
| TCONS_00015622-exon-sc0000214-1575043694:385255..385890 | TCONS_00015622-exon-sc0000214-1575043694:385255..385890 | Clytia hemisphaerica | exon |
| TCONS_00015622-exon-sc0000214-1491911889:386502..386891 | TCONS_00015622-exon-sc0000214-1491911889:386502..386891 | Clytia hemisphaerica | exon |
| TCONS_00015622-exon-sc0000214-1510915933:386502..386891 | TCONS_00015622-exon-sc0000214-1510915933:386502..386891 | Clytia hemisphaerica | exon |
| TCONS_00015622-exon-sc0000214-1575043694:386502..386891 | TCONS_00015622-exon-sc0000214-1575043694:386502..386891 | Clytia hemisphaerica | exon |
| TCONS_00015622-exon-sc0000214-1491911889:387508..387548 | TCONS_00015622-exon-sc0000214-1491911889:387508..387548 | Clytia hemisphaerica | exon |
| TCONS_00015622-exon-sc0000214-1510915933:387508..387548 | TCONS_00015622-exon-sc0000214-1510915933:387508..387548 | Clytia hemisphaerica | exon |
| TCONS_00015622-exon-sc0000214-1575043694:387508..387548 | TCONS_00015622-exon-sc0000214-1575043694:387508..387548 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000214 | supercontig | sc0000214:385255..387548 + |
Blast
The following BLAST results are available for this feature:
|
