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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015616 ID=TCONS_00015616|Name=TCONS_00015616|organism=Clytia hemisphaerica|type=transcript|length=633bp
agatttcttatTCGATGGTTTTTTGTTCGTTTCGTCGACGCCTTCCATCA
AACTTTTCCAAATTCCAACAACAACatacaacaaacaacaaacatgAGAA
GtcgtttcagtcattttgaCGCCGTTTACGCTTGCGTTATTACGTTCCTT
GAATCTACGTATTCCCTTCACTTTTTTCAGCGTAAGTCGAATATCACTTG
TGGAAATCTTTCTTAAGGAagacccccttctcacagacccggtgggattt
tccAAAGTAGCAGACCAAATATCGATGGAGGTTGATATTCCCGTGCTATT
TTATGgttggggatttgaattccattgttttcgagccagaaaatttagCG
GGAATATAAAAAGTAGCACAAAATTTTGTAGTGAGGATtagcttatctga
ttattttcattggggacaaaaattaaaaaaaagagtatGATTTTCCACTG
AGGATGATATACAGAAGTTCTGACTGTAATTCTGTTCTGGTCATATTTCG
GCCAAATCTCACTGCTGTTACcatttttaaggcatttttttGTGTCCTTG
TGAActttggtcaaaaatattcatttcgaCTGAAAAAAACCTTTTAGTTA
TTTATCTTCTTGCTGTCTTGCTATCTATTTTTC Run BLAST on NCBI transcript from alignment at sc0000214:303382..305942+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015616 ID=TCONS_00015616|Name=TCONS_00015616|organism=Clytia hemisphaerica|type=transcript|length=2561bp|location=Sequence derived from alignment at sc0000214:303382..305942+ (Clytia hemisphaerica)
agatttcttatTCGATGGTTTTTTGTTCGTTTCGTCGACGCCTTCCATCA
AACTTTTCCAAGTAAgtccattgttttttttttcagaaaccAAATGAGTT
GTTTCTTGATAAAAGGTTATAGTTTTTTTTGGTTGAATGAGTTCATTTTA
AAAAGCTTCAAAGTAGATTTCTGTTTGGATgtaaacccggggggggggca
gtcaggcaaattgaccgacggatATGTGCttggcggttaagggtatgttt
ttcaaaatatcagaaatgcactgtaagggtggacttttgataaatgcact
gtaagggtggaaattttagcaaatctgggaaaaattgcaaatttttgctc
aaaaatgttgattttttttgctctaaaagagtttaaaatttgaaaaaatg
cactgtaagggtggaaattttagcaaatctgggaaaaattgcaaattttt
gctcaaaaatgttgattttttttgctctaaaagagtttaaaatttgaaaa
aatgcactgtaagggtatgaatttcaccgatttttttctgcactgtaagg
gtgcaattctaaaagtcatttttttcaccgcacataccgtcagttggtaa
acccactgcccccccggATGTAAAACAGACATTTAGTACCCATTTTAAAT
GTGAAATTTACTTGACTTGAAaatgtttatttgttttttttataaaagca
aaatggttcgaatttgaaaaaaagaagaatatagcgccacaaatttaatt
tttccttttttgatacatataaaatggcttctgtatgttctatggaaaga
aagtttaaaaacgtcaatttttattgattttttgtacGTATTCTACAAAC
CCCTGTCTCACTCTCTAGAGGCTTTTTCgcaatacactcttttttttata
agaatacactttataagaatgtccatgatgaaaatcgccataaaactaag
aatatgctaagaatatcaccatcatggaattatgctaataaagctaagaa
tgccatttttagagtattttcaattataaactgtcaattatccccaagta
aggctcactccttttacaaaaatgccattttatgcttgagaagtatgtac
taaatgttaaatctagtatgaattaggatcctaacctaagaatatgctgt
aagaatattttgatgattttcccaaaaaagttaagaatatctatgatgaa
atgaatttacaccattcttataaaaaaaacgtgtatctaacAACAAAGAC
CATTTGAGAGAGAAAAAATTGGTGTTTttggacccttagagagacttttc
ccaaagtttttgtcgatttttactCCATTTTGTCCAAGTTTTTTAAAATT
GTGACCCTTTTAGAGAGGAAATGTCTATTtgacttacacgtttttttttt
attatacctAAGattacacctaaaatttggctgggcctggatgtgcttat
ttttttagcaattttcagcctaaaatgttcttaaacgcgttcttaatttt
tcggactactttaaatcgacaacatcatgcaaaataaagagcacttaaag
ttggtaaaatttgcacaatatttgactctcgattttagaaaatccatcac
TAAGTTtagttaaaactgcttgaaaagaggaaaaaattgtagtttcttgt
catttttttccaagctgaggctgggcatgttcttacgatgttcttaattt
ttcgacgaatttcagcctaaatgttcttataaactgggttctaataaaga
aaaaaacgtgtaatttgctTTTAAATGGACCGGATTTCACTTTatttaat
ttatcatttttataaaATCACGTTTTTCGAATCATGGCGTCATATTTTAa
atcgttcttttcttttaaaggacacatttttgaaatgttttgttgTGATG
TTATTCaagtttttcattcaaaacacAACCATTAATATTGAGTCCAACCA
ACTTCATCgcaatttttattctttcaatATTCTTTCTAGATTCCAACAAC
AACatacaacaaacaacaaacatgAGAAGtcgtttcagtcattttgaCGC
CGTTTACGCTTGCGTTATTACGTTCCTTGAATCTACGTATTCCCTTCACT
TTTTTCAGCGTAAGTCGAATATCACTTGTGGAAATCTTTCTTAAGGAaga
cccccttctcacagacccggtgggattttccAAAGTAGCAGACCAAATAT
CGATGGAGGTTGATATTCCCGTGCTATTTTATGgttggggatttgaattc
cattgttttcgagccagaaaatttagCGGGAATATAAAAAGTAGCACAAA
ATTTTGTAGTGAGGATtagcttatctgattattttcattggggacaaaaa
ttaaaaaaaagagtatGATTTTCCACTGAGGATGATATACAGAAGTTCTG
ACTGTAATTCTGTTCTGGTCATATTTCGGCCAAATCTCACTGCTGTTACc
atttttaaggcatttttttGTGTCCTTGTGAActttggtcaaaaatattc
atttcgaCTGAAAAAAACCTTTTAGTTATTTATCTTCTTGCTGTCTTGCT
ATCTATTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015616-exon-sc0000214-1491911889:303382..303442 | TCONS_00015616-exon-sc0000214-1491911889:303382..303442 | Clytia hemisphaerica | exon |
| TCONS_00015616-exon-sc0000214-1510915933:303382..303442 | TCONS_00015616-exon-sc0000214-1510915933:303382..303442 | Clytia hemisphaerica | exon |
| TCONS_00015616-exon-sc0000214-1575043694:303382..303442 | TCONS_00015616-exon-sc0000214-1575043694:303382..303442 | Clytia hemisphaerica | exon |
| TCONS_00015616-exon-sc0000214-1491911889:305371..305942 | TCONS_00015616-exon-sc0000214-1491911889:305371..305942 | Clytia hemisphaerica | exon |
| TCONS_00015616-exon-sc0000214-1510915933:305371..305942 | TCONS_00015616-exon-sc0000214-1510915933:305371..305942 | Clytia hemisphaerica | exon |
| TCONS_00015616-exon-sc0000214-1575043694:305371..305942 | TCONS_00015616-exon-sc0000214-1575043694:305371..305942 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000214 | supercontig | sc0000214:303382..305942 + |
Blast
The following BLAST results are available for this feature:
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