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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015604 ID=TCONS_00015604|Name=TCONS_00015604|organism=Clytia hemisphaerica|type=transcript|length=1650bp
AGATGGTGTGTTTTCTCGATGTCAAATTGGAAAAGAAGGTCGTACACTTT
TGTTTGCACATAACGATGGAATGGAGAGCAATGTTCACAAATTTGAACTT
GATAAAGGAGTCAAACCAACCGATAAATGCAAAGCGATTACCACAGGACC
TTCAGTTGCAAAGTCTATTGAAGGTTTTTACGAAAGGGCAACAAAATATT
ACATTGACCATCGATCAGTTAAGACATTCCCACCAACGTATTATCTACAA
AAGACTAGCACATCTCTCTTTATCGAGTTACTAAACGAGGTACTCTCGCA
GCGCCATGGAAATCACCTCATCTTATCCGGGTATAACCCAGAAGATCACC
TTAACCTCTTAGGTGTAGGTTCTCAACAGTTTGATAAAATAATTGATCTC
GTCAACAAAGATTACTACAAAAACTCTGTATTACTGGTTCACCCTAAAAA
AAGCTGTGTTTGCGTTTTCGTTGTAATTGATGATACGTCGAAACTGAAAG
AAAGTCTTAAAGCTCTCgataacattttaaaaacaatatatttcgcaagt
tttgaattgttttgcaCAGAATATCTGAGTATTACAGGAACACTTGTTTT
TCCTGATGAAGATATGAAAGATCTAGAACATTTGATGCACTTGAACATTC
cggaaaaaagtgaaacattgtTTATCACCAAACAAGAGTTCCAGAAATGT
AACTTCGAACAATGGATTGATAATCTTTTCAAAACCATAAGATCTGATTT
CAATACAATCCGTTCGAAAGACTTTCGATCAAATATTGATCTATTTCACA
CGTTGTGTGGCACATTAATGACTGTGATGGCGCAAACAACACAATTTCTT
CCACACGTATGTGAGAATGATACAGTCCAAGTTAAGACTATTCTTTTAAA
CGGAGAACAAATTGAGTGTATAACAAACCCTGCAAAGCATAAGATAATTA
AAGCTTGTTTTGGCAGTGGGAAAACAGTACTTTTAATCGAAATGATCCGA
TCCATATTGAAAGAGAAAGACCctcaaaattatattatatttctcTCTTA
TGATCCGTTCAGTGCACTGGACGGAAAAATAAGAGAGACATTCAAATTAA
TATCAAAGGAAGAAAAGGTTCCCGATGACCATTGCCTTAACTTGAAGGCG
ATGTCACTTACCGATGCCCTTGCTGATGCTGAGTTTCCTGTGTCTGATGT
TCTCAACCTTTCATCGACCCCGAAAAGAAATATTGGAGATGTGCTGTTAC
ATATTAAGAATAAACACCCTGAGAAAAAGGTTCACTTTTTCGTTGACGAG
ATACCTTGTGAGATGTTCGTCTCTGAATACTCCAAAGAGTTTTTCAATTA
TCTGAATGTAGACTTTAAGGACAATACAGTGGTTTTCAGCTTACAGAGcg
ttgaaaagaaaagagagaTAGTCCAAAGATATCTAACAGAGAAATCGTCA
GAGATAGACATTGAAAGCACCGGCATGACATTGCTAAAGTTAACGAAGAC
TATGAGGATGTCAAGAACTCTTCATGATTTGAAGGAGATCCTTGAAAAGG
AGATTGAAAGCACGTCGTATTCGATTCCATTGGagatgaagaagaaagaa
gaagaagacaaTGACAAAGATATcgcaaaagtgatttttgattatGAAGC Run BLAST on NCBI transcript from alignment at sc0000214:226292..228375+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015604 ID=TCONS_00015604|Name=TCONS_00015604|organism=Clytia hemisphaerica|type=transcript|length=2084bp|location=Sequence derived from alignment at sc0000214:226292..228375+ (Clytia hemisphaerica)
AGATGGTGTGTTTTCTCGATGTCAAATTGGAAAAGAAGGTCGTACACTTT
TGTTTGCACATAACGATGGAATGGAGAGCAATGTTCACAAATTTGAACTT
GATAAAGGAGTCAAACCAACCGATAAATGCAAAGCGATTACCACAGGACC
TTCAGTTGCAAAGTCTATTGAAGGTTTTTACGAAAGGGCAACAAAATATT
ACATTGACCATCGATCAGTTAAGACATTCCCACCAACGTATTATCTACAA
AAGACTAGCACATCTCTCTTTATCGAGTTACTAAACGAGGTACTCTCGCA
GCGCCATGGAAATCACCTCATCTTATCCGGGTATAACCCAGAAGATCACC
TTAACCTCTTAGGTGTAGGTTCTCAACAGTTTGATAAAATAATTGATCTC
GTCAACAAAGATTACTACAAAAACTCTGTATTACTGGTTCACCCTAAAAA
AAGCTGTGTTTGCGTTTTCGTTGTAATTGATGATACGTCGAAACTGAAAG
AAAGTCTTAAAGCTCTCgataacattttaaaaacaatatatttcgcaagt
tttgaattgttttgcaCAGAATATCTGAGTATTACAGGAACACTTGTTTT
TCCTGATGAAGATATGAAAGATCTAGAACATTTGATGCACTTGAACATTC
cggaaaaaagtgaaacattgtTTATCACCAAACAAGAGTTCCAGAAATGT
AACTTCGAACAATGGATTGATAATCTTTTCAAAACCATAAGATCTGATTT
CAATACAATCCGTTCGAAAGACTTTCGATCAAATATTGATCTATTTCACA
CGTTGTGTGGCACATTAATGACTGTGATGGCGCAAACAACACAATTTCTT
CCACACGTATGTGAGAATGATACAGTCCAAGTTAAGACTATTCTTTTAAA
CGGAGAACAAATTGAGTGTATAACAAACCCTGCAAAGCATAAGATAATTA
AAGCTTGTTTTGGCAGTGGGAAAACAGTACTTTTAATCGAAATGATCCGA
TCCATATTGAAAGAGAAAGACCctcaaaattatattatatttctcTCTTA
TGATCCGTTCAGTGCACTGGACGGAAAAATAAGAGAGACATTCAAATTAA
TATCAAAGGAAGAAAAGGTTCCCGATGACCATTGCCTTAACTTGAAGGCG
ATGTCACTTACCGATGCCCTTGCTGATGCTGAGTTTCCTGTGTCTGATGT
TCTCAACCTTTCATCGACCCCGAAAAGAAATATTGGAGATGTGCTGTTAC
ATATTAAGAATAAACACCCTGAGAAAAAGGTTCACTTTTTCGTTGACGAG
ATACCTTGTGAGATGTTCGTCTCTGAATACTCCAAAGAGTTTTTCAATTA
TCTGAATGTAGACTTTAAGGACAATACAGTGGTTTTCAGCTTACAGAGcg
ttgaaaagaaaagagagaTAGTCCAAAGATATCTAACAGAGAAATCGTCA
GAGATAGACATTGAAAGCACCGGCATGACATTGCTAAAGTTAACGAAGAC
TATGAGGATGTCAAGAACTCTTCATGATTTGAAGGAGATCCTTGAAAAGG
AGATTGAAAGCACGTCGTATTCGATTCCATTGGagatgaagaagaaagaa
gaagaagacaaTGACAAAGGTGATTTAtccttcattttcctttgaaatca
tCATACCATAAATATAGAATATCTTGCTTtgaattttaaggcttcgcaga
cCTTTTCAGAAGAGAgcattttaaaagatatttacGAAATGGTGAAAGAA
AGACCATTTAAGACGGTTTACTCTCGTCAAAGCAACCAACTAGGATAACT
AGGGCTGCAAGCTGCAGTATGTGCAGAACAACCTTCTGATTTAGGGTAAT
TACCAACAAAAAAGGCTTTATATGAATCTTATTGTAACAACCAAGACCGG
CAACCCATAAATTTACGTCCCCTAATCGAGGAAGGTTATACACAAGGAAA
ACActtattttttatctttgttttctACTCAATGGTCTGAATGCTATAAG
ATCATTTTACCATTTAAGTATTGAATTGTATgtatttcaatttaatttct
taGATATcgcaaaagtgatttttgattatGAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015604-exon-sc0000214-1491911889:226292..227910 | TCONS_00015604-exon-sc0000214-1491911889:226292..227910 | Clytia hemisphaerica | exon |
| TCONS_00015604-exon-sc0000214-1510915933:226292..227910 | TCONS_00015604-exon-sc0000214-1510915933:226292..227910 | Clytia hemisphaerica | exon |
| TCONS_00015604-exon-sc0000214-1575043694:226292..227910 | TCONS_00015604-exon-sc0000214-1575043694:226292..227910 | Clytia hemisphaerica | exon |
| TCONS_00015604-exon-sc0000214-1491911889:228345..228375 | TCONS_00015604-exon-sc0000214-1491911889:228345..228375 | Clytia hemisphaerica | exon |
| TCONS_00015604-exon-sc0000214-1510915933:228345..228375 | TCONS_00015604-exon-sc0000214-1510915933:228345..228375 | Clytia hemisphaerica | exon |
| TCONS_00015604-exon-sc0000214-1575043694:228345..228375 | TCONS_00015604-exon-sc0000214-1575043694:228345..228375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000214 | supercontig | sc0000214:226292..228375 + |
Blast
The following BLAST results are available for this feature:
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