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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015600 ID=TCONS_00015600|Name=TCONS_00015600|organism=Clytia hemisphaerica|type=transcript|length=3678bpRun BLAST on NCBI transcript from alignment at sc0000214:169270..194918+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015600 ID=TCONS_00015600|Name=TCONS_00015600|organism=Clytia hemisphaerica|type=transcript|length=25649bp|location=Sequence derived from alignment at sc0000214:169270..194918+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015600 vs. Swiss-Prot (Human)
Match: CAC1H (Voltage-dependent T-type calcium channel subunit alpha-1H OS=Homo sapiens GN=CACNA1H PE=1 SV=4) HSP 1 Score: 538.11 bits (1385), Expect = 1.717e-162 Identity = 325/631 (51.51%), Postives = 429/631 (67.99%), Query Frame = 2
Query: 224 EYEQKEEESSCCRI---------SFFERRKDWALYIFSPKNSARNGAINLVGKQWFDNVVLFFILLNCIIMAIERPSIKDGSIERKIIDVSNHVFTVVFTIEMFIKIFAAGFYFGEKTTYLKNSWNRIDFVLVIISLVDIFVTYVVQSKSGVLGVLKVFRAFRTLRPLRVISRAPGLKIVVETLIHSLVPIGNLLIVGLVFFTIFGILGVQLFKGKFHHCTGLSESDLENVVTKEDCQNLGGRWSNKKYNFDNLFQALFTLFVFSTKDGWVSLMYDGIDAVGIERQPKRNANRWAFLYFVAFLLIAGFVVINMVVGVIIDNFQKCR---------VLVEEEEMENGHTISSSHPASDEDDIPEHLDEYSWVRRKIYNFVSHYKFDLVIAIVIGLNVVFMAIEHNNMSKDLVTFLSILNYIFTAIFILEAIFKIWGFGPRMFFAQRWNQLDXXXXXXXXXXXXXE--ELNSELPINPTIIRIMRVLRIARVLKILKAADGIQKLLNCVTEAIPQVGNLSMLFMLIFFIYSALGIELFGDLDCTRD-TCFGISRHAHFKNFGYALLTLFRVSTGDNWSGLLKDCINQQLCPDG-C-PMMPYMAPIYYSTFXXXXXXXXXXXXXXXXMKQLEDA 2047
E + E+S C R+ + R+ WALY+FSP+N R ++ + FD+VVL FI LNC+ +A+ERP I GS ER + VSN++FT +F EM +K+ A G GE YL++SWN +D +LV++SLVDI V + +LGVL+V R RTLRPLRVISRAPGLK+VVETLI SL PIGN++++ FF IFGILGVQLFKGKF++C G D N+ TK C+ RW +KYNFDNL QAL +LFV S+KDGWV++MYDG+DAVG+++QP +N N W LYF++FLLI F V+NM VGV+++NF KCR E+ S+ P+ + P + D YS RR I++ + + DL I +I +NV+ M++EH N K L L NY+FT +F+ EA K+ FG R FF RWNQLD+ IV LS++GI E E+++ LPINPTIIRIMRVLRIARVLK+LK A G++ LL+ V +A+PQVGNL +LFML+FFIY+ALG+ELFG L+C+ D C G+SRHA F NFG A LTLFRVSTGDNW+G++KD + + D C +P ++P+Y+ TFVL +QFVLVNVVVAVLMK LE++
Sbjct: 1241 ELDDDSEDSCCLRLHKVLEPYKPQWCRSREAWALYLFSPQNRFRVSCQKVITHKMFDHVVLVFIFLNCVTIALERPDIDPGSTERVFLSVSNYIFTAIFVAEMMVKVVALGLLSGEHA-YLQSSWNLLDGLLVLVSLVDIVVAMASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQLFKGKFYYCEG---PDTRNISTKAQCRAAHYRWVRRKYNFDNLGQALMSLFVLSSKDGWVNIMYDGLDAVGVDQQPVQNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLERRRRSTFPSPEAQRRPYYAD-YSPTRRSIHSLCTSHYLDLFITFIICVNVITMSMEHYNQPKSLDEALKYCNYVFTIVFVFEAALKLVAFGFRRFFKDRWNQLDLAIVLLSLMGITLEEIEMSAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHATFSNFGMAFLTLFRVSTGDNWNGIMKDTLRECSREDKHCLSYLPALSPVYFVTFVLVAQFVLVNVVVAVLMKHLEES 1866 HSP 2 Score: 112.849 bits (281), Expect = 7.516e-25 Identity = 77/277 (27.80%), Postives = 139/277 (50.18%), Query Frame = 2
Query: 344 LVGKQWFDNVVLFFILLNCIIMAIE---RPSIKDGSIERKIIDVSNHVFTVVFTIEMFIKIFAAGFYFGEKTTYLKNSWNRIDFVLVIISLVDIFVTYVVQSKSGVLGVLKVFRAFRTLRPLRVISRAPGLKIVVETLIHSLVPIGNLLIVGLVFFTIFGILGVQLFKGKFHHCTGLSESDLENVVTKEDCQNLGGRWSNKKYNFDNLFQALFTLFVFSTKDGWVSLMYDGIDAVGIERQPKRNANRWAFLYFVAFLLIAGFVVINMVVGVIIDNFQ 1165
+V ++F ++ IL+N + M +E +P ++E +SN VFT +F +EM +K+ A G Y++N +N D ++V+IS+ +I V Q+ G L V R FR LR L+++ P L+ + L+ ++ + + ++F IF ILG+ LF KF ++D + V + NFD+L A+ T+F T++ W ++Y+G+ + + WA LYFVA + +V+ N++V ++++ FQ
Sbjct: 789 IVDSKYFSRGIMMAILVNTLSMGVEYHEQPEELTNALE-----ISNIVFTSMFALEMLLKLLACG-----PLGYIRNPYNIFDGIIVVISVWEI----VGQADGG----LSVLRTFRLLRVLKLVRFLPALRRQLVVLVKTMDNVATFCTLLMLFIFIFSILGMHLFGCKFSL-----KTDTGDTVPD-------------RKNFDSLLWAIVTVFQILTQEDWNVVLYNGMAST----------SSWAALYFVALMTFGNYVLFNLLVAILVEGFQ 1019 HSP 3 Score: 92.0485 bits (227), Expect = 1.797e-18 Identity = 63/174 (36.21%), Postives = 100/174 (57.47%), Query Frame = 2
Query: 326 RNGAINLVGKQWFDNVVLFFILLNCIIMAIERPS--IKDGSIERKIIDVSNHVFTVVFTIEMFIKIFAAGFYFGEKTTYLKNSWNRIDFVLVIISLVDIFVTYVVQSKSGVLGVLKVFRAFRTLRPLRVISRAPGLKIVVETLIHSLVPIGNLLIVGLVFFTIFGILGVQLFKG 841
R+ + LV WF++V + I+LNC+ + + RP ++ GS I++ + F +EM IK+ A G FG+K YL ++WNR+DF +V+ +++ S G L R R LRPLR I+R P ++I+V L+ +L +GN+L++ F IFGI+GVQL+ G
Sbjct: 90 RSWCLRLVCNPWFEHVSMLVIMLNCVTLGMFRPCEDVECGSERCNILEAFDAFIFAFFAVEMVIKMVALGL-FGQKC-YLGDTWNRLDFFIVVAGMMEY-------SLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAG 254 The following BLAST results are available for this feature:
BLAST of TCONS_00015600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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