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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015588 ID=TCONS_00015588|Name=TCONS_00015588|organism=Clytia hemisphaerica|type=transcript|length=1643bpRun BLAST on NCBI transcript from alignment at sc0000214:113508..161230+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015588 ID=TCONS_00015588|Name=TCONS_00015588|organism=Clytia hemisphaerica|type=transcript|length=47723bp|location=Sequence derived from alignment at sc0000214:113508..161230+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015588 vs. Swiss-Prot (Human)
Match: CAC1H (Voltage-dependent T-type calcium channel subunit alpha-1H OS=Homo sapiens GN=CACNA1H PE=1 SV=4) HSP 1 Score: 216.468 bits (550), Expect = 2.401e-59 Identity = 163/333 (48.95%), Postives = 220/333 (66.07%), Query Frame = 1
Query: 658 VFWCLERKSRFRHWAIRMTLSPYFERITIFVILMNCVTLGLYDP-YDEDCKTQRCQILEGFETFIYAYFVAEMVIKIIASGLLGKQGYLSEGWNRLDCFIVVAGTFEL-IYGDGEFXXXXXXXXXXXXXXXINRVPSIRIXXXXXXXXXXXXGNVFILCVLILMVFAIIGVQLWNGILRNRCALTIPDTMPVSLQNTTESLMKYYIPDDSDEWEIICPTKDTSSNPELQCLGRIQGLESMVYSMP---GCNTTYGPKSNFTELVAKNLTHCIDWNMFYSSCKDFGLNPNFDAISFDNSGVAFIAIFQAMTLEGWVDIMYYLQDAYSSWVWIYF 1641
VF+CL + +R R W +R+ +P+FE +++ VI++NCVTLG++ P D +C ++RC ILE F+ FI+A+F EMVIK++A GL G++ YL + WNRLD FIVVAG E + G LS++R VRVLRPLRAINRVPS+RILVTLLLDTLPMLGNV +LC + +F I+GVQLW G+LRNRC L D+ V N T L YY ++ +E IC ++ + +Q I G + MP G P++ E V CI+WN +Y+ C+ NP+ AI+FDN G A+IAIFQ +TLEGWVDIMYY+ DA+S + +IYF
Sbjct: 79 VFFCLGQTTRPRSWCLRLVCNPWFEHVSMLVIMLNCVTLGMFRPCEDVECGSERCNILEAFDAFIFAFFAVEMVIKMVALGLFGQKCYLGDTWNRLDFFIVVAGMMEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFL---DSAFVRNNNLT-FLRPYYQTEEGEENPFICSSRRDNG---MQKCSHIPGRREL--RMPCTLGWEAYTQPQA---EGVGAARNACINWNQYYNVCRSGDSNPHNGAINFDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYF 399 The following BLAST results are available for this feature:
BLAST of TCONS_00015588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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