TCONS_00015581 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00015581
Unique Name	TCONS_00015581
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1378

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000214:50618..53912+

transcript sequence

>TCONS_00015581 ID=TCONS_00015581|Name=TCONS_00015581|organism=Clytia hemisphaerica|type=transcript|length=1378bp
NTGGAGTTGCCGAGTAGACGAGAGATTCGTGTCAAAAATCTCTTCAATGT
GCATGATTGTAAGATGCATTGGCAAAAGAACGGAGATTTCTTATGCGTCA
AAGTCGAGCGGCACACCAAATCTAAAAAGggatTTTATTACAATTTGGAG
TTGTTCCGCATGCGGGAGAAGAATATCCCGATTGATACTTTAGAAATTAA
AGATACAATCCAAGCGTTCGAATGGGAACCGAACGGCAATAAATTTGGCG
TTATCCACGGTGAAAGTCCGCGCATTTGTGCAAGCTTCTACGAGTTGGAG
AAAACGACGCTTGGACATGCTAATCTGTTGAAAACACTCGAAAAGAAAAC
ATGTAACACTATTTCATGGTGCCCAGCTGGCCAATTTTGCGTCCTTGCTG
GCCTTCGTAGCATGAACGGAGTATTCGAATTCGTAGACACAGCAGATATG
ACGACTATGAACATGGGTGAGCATTACATGGCTACTGACGTCGAATGGGA
TCCAACTGGACGTTACCTGATGACTGGTGTATCCTGGTGGGCACACAAAG
TGGACAACGGATATTTTATTTGGTCTTTCCAAGGAAAAATCTTGCAGCGT
CATCCCCTCGATCAATTCTGTAACTTCAGCTGGCGGCCACGGCCTGAATC
GTTACTTTCGGAAAAAGAGTTAAGCAAAATCAAGAAGGAGTTAAAGAAAT
ACCAGAAGCAATTCGAACAAAAGGATAAGTTATCTCAATCCAAAGCATCC
AAGGAATTGATTGACAAGCGTCGCAACTTGTTCAACGAATTCGAAGAGTT
CCGTGCCCGCCACCGTGCCACTTTCGAGGAGTACAAATCCGACAGATTGG
CACTCCGTGAAGgTATGGATTCAGAAGAGGAAAGCGGGGACCAGCTTGaa
gagaaaattgaattttttatccGTGAAGAAACTGAAGTCATTGCAAAGAA
GAAAAGCGAGTAATCAACTCCACGCAGTACCTCCAAAATTTGTTGTCGGC
GACAAAAAGTGGTATCAATTGGGTCCCCAACCGCTTATACCACACATCGT
GAAAAATTACATTAGACTTTAGAAATTAtatcattaaattattttttcct
ttttatttgtATGTTAAGAATATGAAGGGAACTGGCACGAGGCGATTCTC
gtgtttctgtttgttttttgaatGTAGTGCTCGGATTCATTTCACATTGA
AGTGGTTCCTATGGAAACCGTGGAGAAGGCGATATCTCATCTGTTGGAAA
ATATATCATACACATGGAAATTTGTTGTTCTCTTTCTTTGGttcactaca
cgtttttttaagaaactagttttaccaaacagcctcaatgtttcttaaga
aatcggccttttgaggcTTAAACGTTTC

Run BLAST on NCBI

transcript from alignment at sc0000214:50618..53912+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00015581 ID=TCONS_00015581|Name=TCONS_00015581|organism=Clytia hemisphaerica|type=transcript|length=3295bp|location=Sequence derived from alignment at sc0000214:50618..53912+ (Clytia hemisphaerica)
NTGGAGTTGCCGAGTAGACGAGAGATTCGTGTCAAAAATCTCTTCAATGT
GCATGATGTAAGACTTTTTGTCCAAGACTGTTTGTTCGGTTTCTGGGCTG
ATAGGTTTTTCTCTTTATAGGTTTCTGGGCTTGACAGGTTATGCTCTTAT
GTCTAGACTTGAAAGATTTTCCAATTTTAGGTTTTTAGGCTTGATAGGTT
TTTCCATATTTCTacattttctagatttttttgtGAGACTTCACACCAAG
ACAAAATTCACAGACGCTCTTACGCCAGATTTAAGCTCTATACACTTGAT
TGTTCTGACGAATTCTTATGCTTAATTTGTTTGAATCACTaaattttctg
aagaaaaaaaacacatttaaGGTAAATGCCATAGCCTGCTATAGCGCTGC
AAAACCAAAGGTCCAAAACTGTTAAAAGCTGTGTTTTTAACACAACAGTT
TGTTTATCTTGAGCAACTTCTTACTTATTCCCATCCATGTTTACTTTCAG
TGTAAGATGCATTGGCAAAAGAACGGAGATTTCTTATGCGTCAAAGTCGA
GCGGCACACCAAATCTAAAAAGGTATACACTTAACTTGTGAAGGCCGTAC
TCCTTAGGCCCATAATTGggatgatatgcaccactggagagtcttctgaa
aacttttacaatattccacccaatacgtcacttattaaacaatagaaaaa
gtgacgtattgggtggaacaaaacagaaaagttgcgaacttgtgaagtca
ttgcagtggtgcatatcatgaatttagcTCTTAGCTGGGAGCTACTTTTT
TTAACATGAGTATCTCGCAGAACTGAAGCCAAAAGTTCCCTTCATGATTG
ACCTTGATTAAGCTTTTCAAAGAGTTACTGTTCTTCATGTTTCtgactac
agttgacgctctctaattcgatcttcaaagggctttggattttcatcgaa
taagggagcgtcgtttatgagagtttcttgttgatcgGGACttaaaattt
catcgaataagggagcctatcgaatagttagtagaacgtcgaattagaga
gcgtcaactgtatttcttttctatttttttttcagggatTTTATTACAAT
TTGGAGTTGTTCCGCATGCGGGAGAAGAATATCCCGATTGATACTTTAGA
AATTAAAGGTGAATTGAAAACGATACTCTTTGTCTGTCTATCTGTGTGTC
TGGAATTTTCTGTCTGTGTTTGCCTCCGATCTGAATATTGAACTCGTGCA
AAAACTACTTTGATTAGCTGAATTTCAGTTACTTGACAATTCAAGTTGTG
CTTCTTTTGTAAAGCTAAATTTGGGACTAAATAAGATGTGAAGAAAAAAA
CTCGGTTATAAAGcgccaaaaaatttttgtaaaacaacTTCTTATTGTAC
ACTATTCTAGCGGGTATTGTAATTCCAAGTAAGTTGTTACCCCCTTGGAG
TTcgtaataactgaataattatgCATTTTGTTCTGTTTCAGATACAATCC
AAGCGTTCGAATGGGAACCGAACGGCAATAAATTTGGCGTTATCCACGGT
GAAAGTCCGCGCATTTGTGCAAGCTTCTACGAGTTGGAGAAAACGACGCT
TGGACATGCTAATCTGTTGAAAACACTCGAAAAGAAAACATGTAACACTA
TTTCATGGTGCCCAGCTGGCCAATTTTGCGTCCTTGCTGGCCTTCGTAGG
TAAGACTTCGAAACTTGACTGACGCACTTTTCTCCTGCTATCTGAACCCA
TATAAGCAGCATAAAGATTTGTCATTGTTCTAATCTGGGCTTGTAACTTT
CGGCAAGTTTTTTCTCGTGTATTACGTATCGCCTAGATCTTTTATAGCTG
ACCCTCCTTCTATTGCACTTTAATGCTTTGTGACTAGATACGAACCTTCC
TACGAACtaattgcatttatttttacTATAGCATGAACGGAGTATTCGAA
TTCGTAGACACAGCAGATATGACGACTATGAACATGGGTGAGCATTACAT
GGCTACTGACGTCGAATGGGATCCAACTGGACGTTACCTGATGACTGGTG
TATCCTGGTGGGCACACAAAGTGGACAACGGATATTTTATTTGGTCTTTC
CAAGGAAAAATCTTGCAGCGTCATCCCCTCGATCAATTCTGTAACTTCAG
CTGGCGGCCACGGCCTGAATCGTTACTTTCGGAAAAAGAGTTAAGCAAAA
TCAAGAAGGAGTTAAAGAAATACCAGAAGCAATTCGAACAAAAGGATAAG
TTATCTCAATCCAAAGCATCCAAGGAATTGATTGACAAGCGTCGCAACTT
GTTCAACGAATTCGAAGAGTTCCGTGCCCGCCACCGTGCCACTTTCGAGG
AGTACAAATCCGACAGATTGGCACTCCGTGAAGGTATTACTTCTTTACTC
CCTACAATCCCTGCTTTTATACACAATGACGTACATATTATGTAACTTAC
CGACGGCGACAATGTTTGAAATTGAAGAAGCGATTCCTTTCGTGCAAGTC
AAATGTCTTCTTTCATAATGATGTTAAACGTGTAACCAATGAAGtgcaag
cccgaagggctagaagcgaatctctaAACTTtgtcaggcaagaaaaagtg
aagccgtatttttgacgacggatgtGATCTAGTCTAGATTtagcgattcc
tttgttttcgtgtgatatttttttttcgaaatttagcggtaaattttagt
ttcaatctggcaTTTGTGCAAAATTTAGGGTGTAACCTAACAGAAGTTAG
ATGAtgtaattttaaaactttttttctaggTATGGATTCAGAAGAGGAAA
GCGGGGACCAGCTTGaagagaaaattgaattttttatccGTGAAGAAACT
GAAGTCATTGCAAAGAAGAAAAGCGAGTAATCAACTCCACGCAGTACCTC
CAAAATTTGTTGTCGGCGACAAAAAGTGGTATCAATTGGGTCCCCAACCG
CTTATACCACACATCGTGAAAAATTACATTAGACTTTAGAAATTAtatca
ttaaattattttttcctttttatttgtATGTTAAGAATATGAAGGGAACT
GGCACGAGGCGATTCTCgtgtttctgtttgttttttgaatGTAGTGCTCG
GATTCATTTCACATTGAAGTGGTTCCTATGGAAACCGTGGAGAAGGCGAT
ATCTCATCTGTTGGAAAATATATCATACACATGGAAATTTGTTGTTCTCT
TTCTTTGGttcactacacgtttttttaagaaactagttttaccaaacagc
ctcaatgtttcttaagaaatcggccttttgaggcTTAAACGTTTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008707	XLOC_008707	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000214	supercontig	sc0000214:50618..53912 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.0851	28.7849	21.7875	23.6181	43.4571	22.8252	43.844	47.598	53.5937	40.5935	55.7555	61.8938	52.3872	72.4421	38.4717	35.9515	53.1629	39.0355	30.3469	25.5689	19.36	15.8296	57.2979	33.0477	49.8664	44.3923	38.3578	50.0259	33.9798	28.5703

Blast

[Close]

BLAST of TCONS_00015581 vs. Swiss-Prot (Human)
Match: EIF3B (Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B PE=1 SV=3)

HSP 1 Score: 359.762 bits (922), Expect = 7.977e-115
Identity = 181/312 (58.01%), Postives = 240/312 (76.92%), Query Frame = 1

Query:    4 ELPSRREIRVKNLFNVHDCKMHWQKNGDFLCVKVERHTKSKKGFYYNLELFRMREKNIPIDTLEIKDTIQAFEWEPNGNKFGVIHGESPRICASFYELEKTTLGHANLLKTLEKKTCNTISWCPAGQFCVLAGLRSMNGVFEFVDTADMTTMNMGEHYMATDVEWDPTGRYLMTGVSWWAHKVDNGYFIWSFQGKILQRHPLDQFCNFSWRPRPXXXXXXXXXXXXXXXXXXXXXXXXXXDKLSQSKASKELIDKRRNLFNEFEEFRARHRATFEEYKSDRLALREGMDSEE---ESGDQLEEKIEFFIREE 930
            +LP+R+EIRV+NLFNV DCK+HWQKNGD+LCVKV+R  K  +G   N E+FRMREK +P+D +E+K+TI AF WEPNG+KF V+HGE+PRI  SFY ++    G   L+K  +K+  NTI W P GQF VLAGLRSMNG   FVDT+D T MN+ EHYMA+DVEWDPTGRY++T VSWW+HKVDN Y++W+FQG++LQ++  D+FC   WRPRP +LLS++++ +IKK+LKKY K FEQKD+LSQSKASKEL+++RR +  +F ++R   +  + E K++RL LR G+D++E      D  EE IEFF+ EE
Sbjct:  497 QLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNN--GKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQKNERLELRGGVDTDELDSNVDDWEEETIEFFVTEE 806

The following BLAST results are available for this feature:

BLAST of TCONS_00015581 vs. Swiss-Prot (Human)

BLAST of TCONS_00015581 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EIF3B	7.977e-115	58.01	Eukaryotic translation initiation factor 3 subunit...	[more]

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TCONS_00015581 (transcript) - C. hemisphaerica