TCONS_00015560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015560
Unique NameTCONS_00015560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015560 ID=TCONS_00015560|Name=TCONS_00015560|organism=Clytia hemisphaerica|type=transcript|length=368bp
NNAAATACAAGTCGAAGTACCTGAAGAATCCAAACCTACCACCATTCACA
AAGAACATAAGTCTTTCATTCCATTCGTGCTTCAAAACAACGCCTTCATC
AAATCCATCCACTTCACTAGACTATCAATCAACAAGTGACGATGAAGGCA
TCTACCTACTTCAAAACGTTGTAATCAACCACAAGGTATTCACAGTTTTC
TTCGACAGTGGTTGCAGTGACTTTATCGTGAAACACAGTGCAATCAAGAA
GCTTGGTACAAATGTCACTCAAGAGTCATCAGAGATCACATCAATTGGTG
GAGTTGGCACCTCGACACAAACAACACTTGGAACATACAACGTCCAGATA
CCCATGATGAATGGCCAN
Run BLAST on NCBI

protein sequence of TCONS_00015560-protein

>TCONS_00015560-protein ID=TCONS_00015560-protein|Name=TCONS_00015560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
KYKSKYLKNPNLPPFTKNISLSFHSCFKTTPSSNPSTSLDYQSTSDDEGI
YLLQNVVINHKVFTVFFDSGCSDFIVKHSAIKKLGTNVTQESSEITSIGG
VGTSTQTTLGTYNVQIPMMNGX
Run BLAST on NCBI

transcript from alignment at sc0000212:51470..51837

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015560 ID=TCONS_00015560|Name=TCONS_00015560|organism=Clytia hemisphaerica|type=transcript|length=368bp|location=Sequence derived from alignment at sc0000212:51470..51837 (Clytia hemisphaerica)
NTGGCCATTCATCATGGGTATCTGGACGTTGTATGTTCCAAGTGTTGTTT
GTGTCGAGGTGCCAACTCCACCAATTGATGTGATCTCTGATGACTCTTGA
GTGACATTTGTACCAAGCTTCTTGATTGCACTGTGTTTCACGATAAAGTC
ACTGCAACCACTGTCGAAGAAAACTGTGAATACCTTGTGGTTGATTACAA
CGTTTTGAAGTAGGTAGATGCCTTCATCGTCACTTGTTGATTGATAGTCT
AGTGAAGTGGATGGATTTGATGAAGGCGTTGTTTTGAAGCACGAATGGAA
TGAAAGACTTATGTTCTTTGTGAATGGTGGTAGGTTTGGATTCTTCAGGT
ACTTCGACTTGTATTTNN

Coding sequence (CDS) from alignment at sc0000212:51470..51837

>TCONS_00015560 ID=TCONS_00015560|Name=TCONS_00015560|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000212:51470..51837 (Clytia hemisphaerica)
NTGGCCATTCATCATGGGTATCTGGACGTTGTATGTTCCAAGTGTTGTTT
GTGTCGAGGTGCCAACTCCACCAATTGATGTGATCTCTGATGACTCTTGA
GTGACATTTGTACCAAGCTTCTTGATTGCACTGTGTTTCACGATAAAGTC
ACTGCAACCACTGTCGAAGAAAACTGTGAATACCTTGTGGTTGATTACAA
CGTTTTGAAGTAGGTAGATGCCTTCATCGTCACTTGTTGATTGATAGTCT
AGTGAAGTGGATGGATTTGATGAAGGCGTTGTTTTGAAGCACGAATGGAA
TGAAAGACTTATGTTCTTTGTGAATGGTGGTAGGTTTGGATTCTTCAGGT
ACTTCGACTTGTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008687XLOC_008687Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015560-exon-sc0000212-1491911889:51470..51837TCONS_00015560-exon-sc0000212-1491911889:51470..51837Clytia hemisphaericaexon
TCONS_00015560-exon-sc0000212-1510915933:51470..51837TCONS_00015560-exon-sc0000212-1510915933:51470..51837Clytia hemisphaericaexon
TCONS_00015560-exon-sc0000212-1575043694:51470..51837TCONS_00015560-exon-sc0000212-1575043694:51470..51837Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015560-proteinTCONS_00015560-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:51470..51837 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.28284	0.872983	0	1.239	0.902712	0.713335	0.860608	1.87995	0.376055	0.532453	0	0.48425	0.741985	0.462335	0.126701	0.135969	0	0.171685	1.18596	0.84055	0	0	0	0	1.67696	1.06903	0.305956	0	1.77457	1.91492
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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