TCONS_00015553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015553
Unique NameTCONS_00015553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015553 ID=TCONS_00015553|Name=TCONS_00015553|organism=Clytia hemisphaerica|type=transcript|length=229bp
GTCATACCAAAACTTCTCCTATGGCCTTGAATTAGTTGAACTTACAAAAT
CAGAGATGGAGTACCTTAATTCTCAGGCAAGGGCTTGTTTAAAATCTCTA
TTCAATGTATCGAAGAGAAGCAAAAAACGGCATTCATCGACTGTACAGTA
TTCCCAATGTATGCAGCATTATCGATGAACGTCGTCTGAACTTACTCAGG
CAGTTAGTGCTTAATGAATCTACCAAGAG
Run BLAST on NCBI

transcript from alignment at sc0000212:4351..4579

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015553 ID=TCONS_00015553|Name=TCONS_00015553|organism=Clytia hemisphaerica|type=transcript|length=229bp|location=Sequence derived from alignment at sc0000212:4351..4579 (Clytia hemisphaerica)
CTCTTGGTAGATTCATTAAGCACTAACTGCCTGAGTAAGTTCAGACGACG
TTCATCGATAATGCTGCATACATTGGGAATACTGTACAGTCGATGAATGC
CGTTTTTTGCTTCTCTTCGATACATTGAATAGAGATTTTAAACAAGCCCT
TGCCTGAGAATTAAGGTACTCCATCTCTGATTTTGTAAGTTCAACTAATT
CAAGGCCATAGGAGAAGTTTTGGTATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008680XLOC_008680Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015553-exon-sc0000212-1491911889:4351..4579TCONS_00015553-exon-sc0000212-1491911889:4351..4579Clytia hemisphaericaexon
TCONS_00015553-exon-sc0000212-1510915933:4351..4579TCONS_00015553-exon-sc0000212-1510915933:4351..4579Clytia hemisphaericaexon
TCONS_00015553-exon-sc0000212-1575043694:4351..4579TCONS_00015553-exon-sc0000212-1575043694:4351..4579Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:4351..4579 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.9618	0.317256	1.21521	0	19.0959	20.5291	19.3567	15.7377	5.99949	6.30796	12.379	11.2347	7.86779	8.41711	3.11176	4.05708	1.11721	2.24199	6.26993	3.54346	8.90606	0	7.06502	5.00835	11.1194	6.21802	5.74929	9.75556	2.40514	1.21369
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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