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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015550 ID=TCONS_00015550|Name=TCONS_00015550|organism=Clytia hemisphaerica|type=transcript|length=890bp
CCGTCGTATTAACCGTAGTATagcaggaattattcaatggaaTAATGAAT
AATGGTGTATTGGAGGATCTAAATTATGGACAAATGCCTCCAAAGTTTGA
TAGGTTCGACCATCGTAGAGCAATAACAACAACTCTTCAAGAATATTTCT
TGCCTCGCTTAATTCACTAAGGAGTGTTGTTTTCAAATGTGTTCGGatat
tttttattcgttttTGACAATTGTCTCTCAAACTTTTGTCAAAACGTTTG
AGAACATTGATTTCTGGtataaaatattctttcaaaaagCCTTCTTTTAA
AGCCTCTTGTAAATCAGTAAATAAAATGTCAATCGTCTCCCAAATCCTCG
TGTCGTTTAGCCAATCGTCAAAGTATATCAAACTGCTGTCTTCAAATCTC
CATAAAACGATAGTTTTGACGATGTAAGAAGTTACTATTTcttcatctaa
aaattttaacgatttattgaatattgatttgaaaatcaCGTAAACAAGTT
TTTTTGCATCAGAAAATGAGTTCAATATAAAATTCTCGATATGAGAGAAA
GAATAAGTCCATTCTGTTGTATTGATGTTGTGTTTTTGCTCGTGTGATGT
TTTAGCTAGGACATGAATATATTCTGATATTTCTCTACTAACATTGTATT
GTGTCCTTGCTAGAAAATTTAACATGACCCTTGGTCTGTAGAATACTTTA
AACATAAAAGCATAATCGAGCTCGGTGGTCAAGTAAAGTTTCTCATCttt
ctgaatttcaaaaatatgtttCACAGTAGCTTTGCTTGTTTTCCCGGAAA
CCTTTACATTTATACTTTTAAATATGATTCCTCGTTTTAAGAAATGATAG
AGAAAAAGATCATGCACTGCTCTTTTCCTGGTGTTTGATT Run BLAST on NCBI transcript from alignment at sc0000212:396489..405723- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015550 ID=TCONS_00015550|Name=TCONS_00015550|organism=Clytia hemisphaerica|type=transcript|length=9235bp|location=Sequence derived from alignment at sc0000212:396489..405723- (Clytia hemisphaerica)
CCGTCGTATTAACCGTAGTATAGCAGGAATTATTCAATGGAATAATGAAT
AATGGTGTATTGGAGGATCTAAATTATGGACAAATGCCTCCAAAGTTTGA
TAGGTTTGACCATCGTAGAACAATAACAACAACTCTTCAAGAATATTTCT
TGCCTCGCTTATTTCACTAATAAGGAGTATTGTTTTCAAATTTGTTCGGA
TATTTTTTATTCGTTTTTGACAATTGTCTCTCAAACTTTTGTCAAAACGT
TTGAGAACATTGATTTCTGGTATAAAATATTCTTTCAAAAAGCCTTCTTT
TAAAGCCTCTTGTAAATCAGTAAATAAAATGTCAATCGTCTCCCAAATCC
TCGTGTCATTTAGCCAATCGTCAAAGTATATCAAATTGCTGTCTTCAAAT
CTCCATAAAACGATAGTTTTGACGATGTAAGAAGTTACTATTTCTTCATC
TAAAAACTTTAACGATTTACTGAATATTGATTTGAAAATCACGTAAACAA
GTTTTTTTGCATCAGAAAAAGAGTTCAATATAAAATTCTCGATATGAGAG
AAAGAATAAGTCCATTCTGTTGTATTGATGTTGTGTTTTTGCTCGCGTGA
TGTTTTAGATAGGACATAAATATATTCTGATATTTCTCTACTAACATTGT
ATTGTGTCCTTGCTAGAAAATTTAACATGACCCTTGGTCTGTAAAATACT
TTAAACATAAAAGCATAATCGAGCTCGGTGGTCAAGTAAAGTTTCTCATC
TTTCTGAATTTCAAAAATATGTTTCACAGTAGATTTGCTTGTTTTCCCGG
AAACCTTTACATTTATACTTTTGAATATGATTCCTCGTTTTAAGAAATGA
TAGAGAAAAAAAACTTGGACTCCTTTTTCCTTGGTGTTTGATTCAGCACC
ATTCAATCTATCCTTTACCTTGCTTTTAAACATGACTGGTCGGATATATT
TGGTTGCTTTCTCGATAAAAACATACCAAGTTCCTTTATCTGGTATACAG
CGGGTCAGGAATTGTACATATCCCGGTTTTCCTTTTATTTCTCTCAGACA
TTGTCGGGGTTTTTTCAGATCTAGTCTAAGATTCATCAAGCAATCAATGT
CAATCTGTCTAGTGATAACCGACCCTTTGTATTTCAGATTTTCTTTAAAA
AATGATGCGATAAATGTTCCTTGATTGAGGCTTCCAGTCAATGATGCTCC
TTCGTAAATATCGGAAAATGATTCATATGTTGCCATATTAATAAACGATT
GAATAACTTTCTTCAGAATTTCCTCTCGTTGTTGAACTTGTCGAAATTCT
TCAATGAGACATTCTAATAGGGTGTAAAATAGAATTGTTTTATTAAGAAA
GGCAGAACATTTTCAGAACAAGTATTGAAAATATGTATATTGGACGGCAT
ATTTTTCAAAGTCTAATTGAATAAAAAATCCAGGATTTTGAGGCTTGCTT
ACTTTCATCATTCAGAAAGAGGATGTTTGTTTTTGACAAATTATTAAAAT
AAACAGGTAATAAAGTCCCAAGGAAAAATTAGAGATTCAAAATATGAACA
GGTTCCTTGACTAGTGTAAGTGTCAGTGTAAACAATAGAGGTTAAATTGG
ATTTCTTAAACTTACTATTGACTCTTGAATTCGTAGTCAAAAGTTCGATG
CAAAAATGAAAGGTAAAAACAAACAAAATTCTTTGAATTGGGTTTTTGTA
CATCCTTCTTCATCAATAACACGAAACAGTGCACAAAATGTACTTATCAA
ATCATAAACTAAACGATGAATATTTATATCTTCACTTGTCTCACTCTCAA
AAGTACTTTCTGTGCTACGGACGATTTTATTGCTAAAGAGAGATTTATAT
TTGTTCATGTCTCTTACTGATTAGCTCAGAAGAAATCAATCAAAAGTTTT
TAAAAGATCCTTTTAAGCTAGAGTAGATTATCAGTAAGTTTATGCGTTAT
TTTATCATAAGAACATCCAACAATTTTTGGATTAATCTGGTGTTTTATAC
TCTGCAAAGCCTTAAAATGTTTCTGAACTTGTATTTGGCCATCGAACCCT
TATGTTCTTATATAGTTTGTTCTTATATAAAATAAACGTGATAGGGAGAC
TATTTTTACTTAGATTAGATTTCTTAAACTTGACCCTTCAACGAGTGTGT
CTTTTTATTTGTCTGTGCCTATAATAATGCGAGTTTTTTAACTGACAGTT
CTTAAAATACAATGGCTTTTTCACGAGCCGAGCCGAAAAGAATTATCTCG
TCATTAGACATTATCTTGTTTGGGGGTTTGCAACTGAATGACGAAATATT
TCGTCAGAGTCCAGTGGGGTTTTGTTACCATAACTGAAAAACAAAATGAC
TTCAGGCGAAAATATTTCTTAAACCTTTTTTGACCCTTTAACGACTGTAT
TTTTATGTATCCGTGCCTATGATACTGCGATTTTTTTAACTGATCACAAC
GGCTTATTCATGACTGTATTTTTACGACTTTAGTACTAAACTATTAAATA
CACATTCATTTTAAAAAAGACTTCGAGTTTAATTTATGTCATTTAGTGTA
GTGTTGAATTTTATTTTTGCTCGAAAAAGGAAATACTTAAAAAAATTTGG
AAACGAAAGTACTTGATACGGTGGACGAACTCACTAAATTTAATTTACAA
ATTACACGCTCGTATAACCACAGACGATTTTTGCGGGTTTTCTTTGGATT
ACGTCGTATATCTTTGTGATTTTTTTCTTCATTTTTTTATACTTTATAAG
AATCAAATCAATAATTCTTGATAGACGGTGATATAGCCTTTCGGTAATTA
GTTCTTTCAAAGTAAACAAGGGATGGTGCACAATATGAGCATATTCATTT
TTCTTATAAGCATTTACTTTATAAGAATCAAATTAAAAACTCTTGATAGA
CGGTGATATAGCCTTCGGTAATTAGTTTTTACAAAGTAAACAAGAGATGG
CAGGCGNATTACATACTCCAGGCTCCGTAAGGTTCCTTATTATAATTGAA
AAAGCGTATACTAACAAACGATACGGAACTCGTGAGAGTGTTTTTAAACT
GTTGTCTTTGTTTATCTTCACAAGATTTTGTTTATCTTTGCGACTTAGTT
CTCGCTTTCGGCCTTTCTTCTACTCGTTTTCAGCCTATCACCTTCGATTT
CAGCCTCNTCAAATCAATAACTCTTGATAGACGGTGATATACCTTTCGGT
AATTAGTTCTTACAAAGTAAACAAGGGATGGGGCGCAATATGAGCATATT
TATTTTTCTTATAAGCATATACTTTATAAGAATCAAATTAAAAACTCTTT
ATAGACGGTGATATACCCTTCAGTTATTAGTTCTTAAGAGTTAAACAACC
ATTGTTCTAAAAATGGTCTTTTCTTTTTAGCGATTTTGAGCCTTGTTGTT
CATATAAAATTGTTTCATCAAGGCTCAATGTAAAGTGGATTTCAGATTAG
CTTCCATCTCTACTTCTTGTTTTTCCCATGAGGTTTAAACTTAAGGCGTA
ATTTTCGACTTCAATTCGTCTTGTTTTACTTCCCTTAGAACTAAAACTAT
AAACGTAAAACCATTGGCATACAGGAAAACTGGGAGCAGNCCGCCTCCCG
CCTCCCGCCTCCCACTTTCGTTTTCAGCCTCCTGCCTCCCACTTTCAATT
TCAGCCTCCCGCCTCCCACTTTCGTTTTCAGCCTCCCGCCTCCAACTTTC
GTTTTCAGTCTCCCGGTTTAGCCTCCCGTCTCCCACCTCCCACTTTCGAT
TTCAGCCTCCCAACTCCCAGCTCCCGGTTCAGCCTCCCGCCTCCCGGCTC
CCAGTTTTCCTGTATGCCAAACCATTAGTTTTTAACGATCAATTTAGATT
TACTTTCTTTCGGTATATCAGATGACACTTTTTCAATAACCGCGGTATTG
TGTGAACATAGCGCCATCGCAAAATATCTCGGCATCAGTATTTTTGGCAT
GACATGCGATGACGGGATATCTTATTAGGAGTATTTTTGGCACGGAACGC
GATGATGAGGCATATCGTATATCACTCCTTAAATGGTTAATAAATAATTT
CAATTAACTCCTACCATCATTTAATTCTAGTGTCCAATTTTATATAAGAA
ATAGACCTAATTCCCTCTTTATATATTATAAGTTGTGATTTAAAAAAAAG
AAGCCTAAACTAAAATTTGCTAGCTCTTCTTTAACCAGCTTTTTATTTAT
ATTTTCCTTACATACACATGGAATGACTAAAAATGGTATAATGTTTTTCT
TTTGTTACATAAAAATGCGAGATTGATATAAAAATCGACAAAACCCTATA
CAAATACAAATACACTAGGATAGGGAATAGCGAAAGATCGGAAGGATGGG
TGCAGTCAAATTTGATTGAATATTTAAAAATACTTACTAATTCCTGAATT
TTTAGTTAAAAACTCAACTTGAAAACAGAAAACAAAAACAAATAGTATCC
TCTGAATAGTCAAAACTTCCATCTTTTATGAAAGACACAAATGCCTTGTT
ACATATTACATGTTACATTTCTGTTTTATTAGACTTTTCGAATTTATTAA
AAAAAGAGATCTTATTGAATGATAAAACTGCAGTTTTAATCAGATTTATG
AATTGCGATGTTTTTTGTTTTTTTATACTCTTATTAGTCCAGGGAAAGTG
TGCATCAATTGTGCGTTTTTGACTAGAAAGCATGAAATTTGGTACAGTGG
TACCTTAGGGGGTAAGAAACATTTTAAGCCTCTGACCCATTTCTAGAACA
CCTGTTTGTGTATTTTACAGACCGGAATGCCTCCCAGGCAAGAAAAAAAA
ATTTTATCTTCAAAGCATGTCATATGATATATCGTTGGAAAGGTTTTCTC
ACACTGATTCTAAAAAACATCACAACATATATCTGCAAATGGACTGGGTC
CGAGTTATGGGCTACGGAAGTAATTTACAGACCAGTCTGCATGCCCGAAA
AAAAATTTTGTTTTTGTTCTAAAACATGTCAAATCATATACTGTTGGAAA
GGATTTTTCACACTGATTCTAAAAATCATCATGATATGTATCTCAAAATG
GACTGGGTCCGTGAAATAAGCCATAGGAGTAATTTACAGACCAGAACGGC
TCCCCGGCATACAAAAAATATTTTTATCTCCAAACCATGGCATATCATAT
ACCGTTGGAAAGGTATTTTTACACTGATTCTAAAAAATATCACAACATGT
ATCTGAAAATGGACTAGGTCCGAGTTATGGGCCAGGAGCCATTCTGGTCT
GTAAAATACTCCCATGGCCTATAACTCGAACCCAGTCCATTTTGAGATGC
ATGTTGTGATGTTTTTTGGAATCAGTGTAAAAATACCTTTCCAACGGTAT
ATGATATGTCATGGTTTGGAGATAAAAATATTTTTTTGTATGCCCGGGAG
CCGTTCTGGTCTGTAAATTACTCCTATGGCTTATTTCACGGACCCAGTCC
ATTTTGAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGAGATACATATCATGATGATTTTTAGAATCAGTGTG
AAAAAACCTTTCCAACGGTATATGATATGACATGTTTTGGAACAAAAATA
AAAAATTTTTTCGGGCATGCAGACTGGTCTGTAAATTACTTCCGTAGCCA
ATAACTCGGACCCAGTCCATTTGCAGATATATGTTGTGATGTTTTTTAGA
ATCAGTGTGAGAAAATCTTTCCAACGATATATCATATGACATGCTTTGAA
GATAAAAAATTTTTTCTTCCCTGGGAGGCATTCTGGTCTGTAAAATACAC
AAACAGGTGTTCCAGAAGTGGGTCAGAGGCTTAAAATGTTTCTTACCCCC
TAAGGTACCACTGTACCAAATTTCATGCTTTCTAGTCAAAAATGCACAAT
TGTATTCATTTTTAGCACACTTTCCCTGGACTATATGATAGAAATCCAAT
GACAGTCTTTTCATTAATATTTCTCATTTCAGAACTATTAGTTCTAAAAC
TTTATTTGAAATCATCTTTCTAAGAGTTCTCTTTTCGCTAAAAATAACCC
CTCAAAGATTAGGGTTCAGAGGACCTATCAGTACATATCCGGTATTCTTC
AATCCTTAAACTCTTGGCCTAGAAATATCGACGAGCTGCACGCCAACAGC
CTAGAAAATAGAATTAGCAAACAAGTAAGCCATGTAAATATCGATATTTC
CAAACGTTGGTCGTCTTTTAACTGAAGGACTAGCTAGAGAACTCTTAGAA
AATTATTCGAAAAATCTCCCCCTAACTTTTAGACATGTTACCGTTTTCTT
ACTGTTAGAGTCCTTAAAAGATTAGAGACTGTGAAAGATTAAAATAAAGA
CCCTAAAACCCAACAAAAACCCAGCACCCTACTTTGGCCAATTATGCTTT
TATGGGGCGGAGGTTCAGGGGGTACCCGATTCCGCAATTCCGCAAATTTC
TTCTCCATTTTCCGTCAAATGGTCTGAAAACCGAAATTCTGCCACGTTTT
TGTCGAAAAATTCCGCGAATTTTGAATATTTCTTGCAAATTCCGAAATTC
CGCCTTTTTTGAGTTGATTTTGAATTGATTTTCCCTAAGTTATCTCATTG
GTTGAATTTTTATTACGGAATGCAAGTATGGTTTTTCTCTATTCATTCAA
CTATGTACATCTACACCATACAAGCTCATGCTGTATATTATAGCTTGATT
AAAAAAATCATTTGCGTACTTATCATTAAAAAATCATGATCNCTCATGCT
GTATATTATAGCTTGATTAAAAAAATCATTTGCGTACTTTTCATTAAAAA
ATCATGATCGAAATCATGTTCCAATTTTTTACTTATTTAAAATGAATTGG
AAAAATCGTTTTTACAATTTCTTTTCAAATCTTGGATGAAGCTTCTCCTC
CTAACGTCCTTTGTTCTAAGAGGTACCCAAACCTACCTCTTGTAACAATG
GACTCAATGAGGGGAAGGCCGATTAATAAAAGAATTCGTAAAAAGGATTT
TGCAGTCTTGAGAGTCAATTTTGCTCATGCAACAGTTAGAGACCTTAAAA
GATTAGAGACAGTGACAGATCAAAATAGAACCTTTAGGGAAACACGTTTG
ACTTATTGTTGTTTTTTAACCATTGAAGAAACTTGCAATGATCGAAAACC
CAACAAAAACCCAGCACCATATTTTGCCCAATTATCCTTATATAAAGCAC
GGAATTCAAAACTACCTTACTTACCTAAATATTCTCAGGTGAATAAAATT
GAACAATAAGCAGATATTCAATAGGTAAAATTTGGTCATAAAGGGTGGGT
TTACATCTAGGTGAGAATCAATATTAAGAATTACAATAGAGATTTCATCA
CGATTTCCTTTTTTGATTTATAATTGATTTTCCTTAAGTTTTCTCATTGG
TTGACTTTTTATTACGGAATGCAAGTATGGTTTTTCTCTATTTATTCGAC
TATGCATTTCTACACATACAAGCTGACGCTGTATATTATAGCTTGATTAA
AAAAAATATTTTTATACTTTTCATTAAAAAAATCATCATCTAAATCATGT
TCCAATTTTTTACTCATTTAAAATTAATTGGAAAATTCGTTTACACATTT
TCTTTTCCAATCTGATGGATCTTCTCCTCGATACGTCCTTTGTACCCAAG
GAGGTACCCAAACCTACCTCTTGCAACAATGGCCTCAATAAGGGGAAAGT
CAGTTATTTTCGTTTATGTTCGGAATTGCTATCGACAAAGGGAGTGGTAA
TTGATTCTCTCCTAAAAAAAGTATCGAGTTGGAACATGATTCTGAGTAGA
AGGTTGTTGCATGTGTTTAACAAAATGTAAGAAAATTATATATATCAACA
CATCAATTGTTTTTACGACAGTCAATATGATTAAAAACAATTAACTTACT
TTACAATTCTCATAACGTTATGGTTATTCGGATTGTTTTTTGTTTTTTTT
AGTTATTCATAAAAGATTTCTCGTGGCAATTAATATGACACAGAAAAACT
TTGATAAACATTGCAAATTTAGTGAAACACACACAAGAACTTTCTTCCTA
TACAGGGTGTCCGGAAAAAAAGTACCGAGTCATACCACTTCTATAGAAAG
AAAGTTCTTGTGTGTGTTTCACTAAATTTGCAATGCTCATCAAAGTTTTT
CTCTGTGTTCACCCGGACTTGTATACCTAAGGCGAAAAAAAAACATAAAT
CATTTAAATAGTTAAACGACTTTGAAAGCAAAAATTCTACCGTTGTCTAA
TAATCGTGGTATATCAGGAATTATTCAATGGCCTGCAGGTGTATGATAAT
TTTTCTTATTTCTCAACATACATAAATGATAAAATAAAGTATAACAATTT
TACGAAAAAGAGCGTAAAATCTCAACAAATCCCTCCACAGTTACATAGGT
TCGACCATCGTAGAGCAATAACAACAACTCTTCAAGAATATTTCTTGCCT
CGCTTAATTCACTAAGGAGTGTTGTTTTCAAATGTGTTCGGATATTTTTT
ATTCGTTTTTGACAATTGTCTCTCAAACTTTTGTCAAAACGTTTGAGAAC
ATTGATTTCTGGTATAAAATATTCTTTCAAAAAGCCTTCTTTTAAAGCCT
CTTGTAAATCAGTAAATAAAATGTCAATCGTCTCCCAAATCCTCGTGTCG
TTTAGCCAATCGTCAAAGTATATCAAACTGCTGTCTTCAAATCTCCATAA
AACGATAGTTTTGACGATGTAAGAAGTTACTATTTCTTCATCTAAAAATT
TTAACGATTTATTGAATATTGATTTGAAAATCACGTAAACAAGTTTTTTT
GCATCAGAAAATGAGTTCAATATAAAATTCTCGATATGAGAGAAAGAATA
AGTCCATTCTGTTGTATTGATGTTGTGTTTTTGCTCGTGTGATGTTTTAG
CTAGGACATGAATATATTCTGATATTTCTCTACTAACATTGTATTGTGTC
CTTGCTAGAAAATTTAACATGACCCTTGGTCTGTAGAATACTTTAAACAT
AAAAGCATAATCGAGCTCGGTGGTCAAGTAAAGTTTCTCATCTTTCTGAA
TTTCAAAAATATGTTTCACAGTAGCTTTGCTTGTTTTCCCGGAAACCTTT
ACATTTATACTTTTAAATATGATTCCTCGTTTTAAGAAATGATAGAGAAA
AAGATCATGCACTGCTCTTTTCCTGGTGTTTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015550-exon-sc0000212-1575043694:405621..405723 | TCONS_00015550-exon-sc0000212-1575043694:405621..405723 | Clytia hemisphaerica | exon |
| TCONS_00015550-exon-sc0000212-1575043694:396489..397275 | TCONS_00015550-exon-sc0000212-1575043694:396489..397275 | Clytia hemisphaerica | exon |
| TCONS_00015550-exon-sc0000212-1510915933:405621..405723 | TCONS_00015550-exon-sc0000212-1510915933:405621..405723 | Clytia hemisphaerica | exon |
| TCONS_00015550-exon-sc0000212-1510915933:396489..397275 | TCONS_00015550-exon-sc0000212-1510915933:396489..397275 | Clytia hemisphaerica | exon |
| TCONS_00015550-exon-sc0000212-1491911889:405621..405723 | TCONS_00015550-exon-sc0000212-1491911889:405621..405723 | Clytia hemisphaerica | exon |
| TCONS_00015550-exon-sc0000212-1491911889:396489..397275 | TCONS_00015550-exon-sc0000212-1491911889:396489..397275 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000212 | supercontig | sc0000212:396489..405723 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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