TCONS_00015548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015548
Unique NameTCONS_00015548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015548 ID=TCONS_00015548|Name=TCONS_00015548|organism=Clytia hemisphaerica|type=transcript|length=847bp
AGGACATCGACCGAACGCTAATCGAGTTTTATTTCTCTTAACCGATGGTA
CTCAATCGTTTTCACTCGATAAAGTCGATAATCATTTGATATCGAGAAAC
ATTCGATATTCGGGTACAGAGTTCTTCGTCATCGGTGTGGGTCGTAGTGT
GAAGAAAGACGAATTGGTCAAAATTGCCGGTGGCGAAGAGCGAGTTTTCA
TTGCGGAAGATTTCGATAAATTGAGCTCCAAAGAATTTATCGACCAATTT
AATATGAGTTGCAGTGATGTCGATTTTAGATACAGTCAGAAATATTATCT
AAATATCTTGTTCATCAGTGAAGCATCCCAAGACGCTACTattcaaatcg
aaagtgaaagtggaaATGCGAATGATAGAACGTCCTTTGTTGTAACTGTC
AATAGCCGTCAATCTTACAAGCGACAAATCTTGACGCAGAAAACTCGCAG
CGTATTGGTGCGAGGTGAACGTTCAGGATCTTTCATTCCGATTTTGAACG
GACAAAGTGGACATTTGATATACCGATATAATCCGGTTGAAGAATTGGGC
ATCGTTCGTATAACTGACGGAGGGTTGAAACAAAGCAGAGCGCACCGTGT
GTTCGTACACTTTTTGAACCAACTACCTTACACCGTCTACTTGAAATGTT
CCTTCAAAAATCAAGTGGTTGCGCAGTACAACATTTCTTCCAATAGAATG
TATCATGTCTTCATGTTCGATCTGGAAACTCACGGACAGGTTACATTCTC
AGTGGCCAATGCTGATGGAAACACAGTGAAGATCAATGGTGGACGAAACA
GCTGGTATCTTGATGTTGACAGTGGAACATTTCTATATCGAGTGAAC
Run BLAST on NCBI

protein sequence of TCONS_00015548-protein

>TCONS_00015548-protein ID=TCONS_00015548-protein|Name=TCONS_00015548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
GHRPNANRVLFLLTDGTQSFSLDKVDNHLISRNIRYSGTEFFVIGVGRSV
KKDELVKIAGGEERVFIAEDFDKLSSKEFIDQFNMSCSDVDFRYSQKYYL
NILFISEASQDATIQIESESGNANDRTSFVVTVNSRQSYKRQILTQKTRS
VLVRGERSGSFIPILNGQSGHLIYRYNPVEELGIVRITDGGLKQSRAHRV
FVHFLNQLPYTVYLKCSFKNQVVAQYNISSNRMYHVFMFDLETHGQVTFS
VANADGNTVKINGGRNSWYLDVDSGTFLYRVN
Run BLAST on NCBI

transcript from alignment at sc0000212:343773..346256-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015548 ID=TCONS_00015548|Name=TCONS_00015548|organism=Clytia hemisphaerica|type=transcript|length=2484bp|location=Sequence derived from alignment at sc0000212:343773..346256- (Clytia hemisphaerica)
AGGACATCGACCGAACGCTAATCGAGTTTTATTTCTCTTAACCGATGGTA
CTCAATCGTTTTCACTCGATAAAGTCGATAATCATTTGATATCGAGAAAC
ATTCGATATTCGGGTACAGAGTTCTTCGTCATCGGTGTGGGTCGTAGTGT
GAAGAAAGACGAATTGGTCAAAATTGCCGGTGGCGAAGAGCGAGTTTTCA
TTGCGGAAGATTTCGATAAATTGAGCTCCAAAGAATTTATCGACCAATTT
AATATGAGTTGCAGTAAGTAGAATCTTCATCTCATGTCTTTCTTATTTCT
TCGTGTACCCATGGGTAACGAGAATATCCTGATCCAGAGCCGAACGTAAG
ATTAAATCGGCTTATGGAAAATCAAAGAGATAAATCCGGGTTGTATTACA
GTGTTATCTGAGGGGTTGAAAGTTGGAATGAACCAGAATAATTCTGTACT
CAAGGATCTGAAAGTTTTCTTCAAATCGGAAGAAGATTCCAATTATGAAG
TTCTTCTATACGAATTTGGACCTGAGAGAATACACTGATGTGTCAGTGCG
AATAGAAAAAGAATAAATAATAGAGGCTTAAATTTATAGATATTAAATTG
ACTTGTTTCCACTGTAGGTTGAGCCATCTTTTCGAAGGTCTTATGCAATT
TTGCTTTCATTGCTCTATGTTCTGTTTTTCAGGTGATGTCGATTTTAGAT
ACAGTCAGAAATATTATCTAAATATCTTGTTCATCAGTGAAGCATCCCAA
GACGCTACTATTCAAATCGAAAGTGAAAGTGGAAATGCGAATGATAGAAC
GTCCTTTGTTGTAACTGTCAATAGCCGTCAATCTTACAAGCGACAAATCT
TGACGCAGAAAACTCGCAGCGTATTGGTTGGTTCATTTTTTTTATTTGTC
TACTTTTTTTATTGGCAAAGTAGCAGTCGATTTGATAGTCAGGGGTTAGC
AGCATGAGGAATTTAATACGAGAATTATGAATTGACTTTCGTTAAAAAAT
GTTCATTTAATGCTCTCCAAGATGTAGTTAAATTATAAATCGTTTTTTAA
AACCAAAGAAAATATTTTGAAAAATTAAATTTGGGTCCTTTACTAAAACT
ATTTTTTAGATCTATCTTTCCGAGCTGCTGAACTCCTAAGTTATGACGAC
TGTCGTAAAAAAATCATATCAAAAAGCATTGAATTTGTATGGGAAAGGGT
GAAAATATAAATTTCGGTCTCTTCCGAAAGTCTGAATGTCTGAATCTGAA
ATTTTGTCCGCACAAAAAAAAACATGACCGATTCTTTTAGGTGCGAGGTG
AACGTTCAGGATCTTTCATTCCGATTTTGAACGGACAAAGTGGACATTTG
ATATACCGATATAATCCGGTTGAAGAATTGGGCATCGTTCGTATAACTGA
CGGAGGTAAGCGGTATTTTTATGTCATCAAGATTGTTTGAGAGATCGAGA
CTAGCACGTGACCGAGACATCCCCTCGGGAGAGTATTCACCTAAAAGTTC
AAGAGCATTTGTTTTGAACTATTTCCATCAATGATCTTTACCATTGATTT
TGTCGTATATTTTTTCTTTGGATCGGTTTTGCTAGTTTTGAAGGTGGGGT
TTGACCTTCATCAACAGTTCTGTAATGCTTTCTTCGTGTATTCTTAAAGC
AATATCCCATGAAATTGACGGTAATCTGACCAATTGATATTAAAAGAATG
TGGTGCATCCAATCTGATCGGATAAACAGTCAACACTGACCGATTAAGTA
ATGCCTCCACAAATAAGTAGTCAGGATCATTATTTATCAAAGGGGAGCTA
TTGATCTTGTTTTGGCCACTGATCTAGTGATATCATTTCTCTTTAGGGTT
GAAACAAAGCAGAGCGCACCGTGTGTTCGTACACTTTTTGAACCAACTAC
CTTACACCGTCTACTTGAAATGTTCCTTCAAAAATCAAGTGGTTGCGCAG
TACAACATTTCTTCCAATAGAATGTATCATGTCTTCATGTTCGATCTGGA
AACTCACGGACAGGTGATTAACCGAATTTTAGACTATGTTCGCACGTGAC
GGTTCCGTTTCGCTCCGAAATGAAATTAAGCCATTCTATTGGTTACATCC
AAGTGTTACGTCACTTCTAACCAATAGAATATAACATTTCGCAAAGTATA
CTTTTAGTAAATCTTCTAGCCAAAACACTCATTGATTTTTCTTGTTCTGG
AGATTTGTTTTGTTTACATCGCGAAATTAACACCCCACGAAATAAATTTG
GACCAATACCAGATGTGCTTCCTGAGTGCACATTCGAAATCTCGCCAGAG
GTTCTGCGTGGACTCGATAAATTTCTGGTGTTTAATGGATAAACATTTTC
CAATTCTTTTTCTCAAACTTTTGCAGGTTACATTCTCAGTGGCCAATGCT
GATGGAAACACAGTGAAGATCAATGGTGGACGAAACAGCTGGTATCTTGA
TGTTGACAGTGGAACATTTCTATATCGAGTGAAC

Coding sequence (CDS) from alignment at sc0000212:343773..346256-

>TCONS_00015548 ID=TCONS_00015548|Name=TCONS_00015548|organism=Clytia hemisphaerica|type=CDS|length=4230bp|location=Sequence derived from alignment at sc0000212:343773..346256- (Clytia hemisphaerica)
GTTACATTCTCAGTGGCCAATGCTGATGGAAACACAGTGAAGATCAATGG
TGGACGAAACAGCTGGTATCTTGATGTTGACAGTGGAACATTTCTATATC
GAGTGAACGGTTGAAACAAAGCAGAGCGCACCGTGTGTTCGTACACTTTT
TGAACCAACTACCTTACACCGTCTACTTGAAATGTTCCTTCAAAAATCAA
GTGGTTGCGCAGTACAACATTTCTTCCAATAGAATGTATCATGTCTTCAT
GTTCGATCTGGAAACTCACGGACAGGTGCGAGGTGAACGTTCAGGATCTT
TCATTCCGATTTTGAACGGACAAAGTGGACATTTGATATACCGATATAAT
CCGGTTGAAGAATTGGGCATCGTTCGTATAACTGACGGAGGTGATGTCGA
TTTTAGATACAGTCAGAAATATTATCTAAATATCTTGTTCATCAGTGAAG
CATCCCAAGACGCTACTATTCAAATCGAAAGTGAAAGTGGAAATGCGAAT
GATAGAACGTCCTTTGTTGTAACTGTCAATAGCCGTCAATCTTACAAGCG
ACAAATCTTGACGCAGAAAACTCGCAGCGTATTGGGACATCGACCGAACG
CTAATCGAGTTTTATTTCTCTTAACCGATGGTACTCAATCGTTTTCACTC
GATAAAGTCGATAATCATTTGATATCGAGAAACATTCGATATTCGGGTAC
AGAGTTCTTCGTCATCGGTGTGGGTCGTAGTGTGAAGAAAGACGAATTGG
TCAAAATTGCCGGTGGCGAAGAGCGAGTTTTCATTGCGGAAGATTTCGAT
AAATTGAGCTCCAAAGAATTTATCGACCAATTTAATATGAGTTGCAGTTA
CATTCTCAGTGGCCAATGCTGATGGAAACACAGTGAAGATCAATGGTGGA
CGAAACAGCTGGTATCTTGATGTTGACAGTGGAACATTTCTATATCGAGT
GAACGGTTGAAACAAAGCAGAGCGCACCGTGTGTTCGTACACTTTTTGAA
CCAACTACCTTACACCGTCTACTTGAAATGTTCCTTCAAAAATCAAGTGG
TTGCGCAGTACAACATTTCTTCCAATAGAATGTATCATGTCTTCATGTTC
GATCTGGAAACTCACGGACAGGTGCGAGGTGAACGTTCAGGATCTTTCAT
TCCGATTTTGAACGGACAAAGTGGACATTTGATATACCGATATAATCCGG
TTGAAGAATTGGGCATCGTTCGTATAACTGACGGAGGTGATGTCGATTTT
AGATACAGTCAGAAATATTATCTAAATATCTTGTTCATCAGTGAAGCATC
CCAAGACGCTACTATTCAAATCGAAAGTGAAAGTGGAAATGCGAATGATA
GAACGTCCTTTGTTGTAACTGTCAATAGCCGTCAATCTTACAAGCGACAA
ATCTTGACGCAGAAAACTCGCAGCGTATTGGGACATCGACCGAACGCTAA
TCGAGTTTTATTTCTCTTAACCGATGGTACTCAATCGTTTTCACTCGATA
AAGTCGATAATCATTTGATATCGAGAAACATTCGATATTCGGGTACAGAG
TTCTTCGTCATCGGTGTGGGTCGTAGTGTGAAGAAAGACGAATTGGTCAA
AATTGCCGGTGGCGAAGAGCGAGTTTTCATTGCGGAAGATTTCGATAAAT
TGAGCTCCAAAGAATTTATCGACCAATTTAATATGAGTTGCAGTTACATT
CTCAGTGGCCAATGCTGATGGAAACACAGTGAAGATCAATGGTGGACGAA
ACAGCTGGTATCTTGATGTTGACAGTGGAACATTTCTATATCGAGTGAAC
GGTTGAAACAAAGCAGAGCGCACCGTGTGTTCGTACACTTTTTGAACCAA
CTACCTTACACCGTCTACTTGAAATGTTCCTTCAAAAATCAAGTGGTTGC
GCAGTACAACATTTCTTCCAATAGAATGTATCATGTCTTCATGTTCGATC
TGGAAACTCACGGACAGGTGCGAGGTGAACGTTCAGGATCTTTCATTCCG
ATTTTGAACGGACAAAGTGGACATTTGATATACCGATATAATCCGGTTGA
AGAATTGGGCATCGTTCGTATAACTGACGGAGGTGATGTCGATTTTAGAT
ACAGTCAGAAATATTATCTAAATATCTTGTTCATCAGTGAAGCATCCCAA
GACGCTACTATTCAAATCGAAAGTGAAAGTGGAAATGCGAATGATAGAAC
GTCCTTTGTTGTAACTGTCAATAGCCGTCAATCTTACAAGCGACAAATCT
TGACGCAGAAAACTCGCAGCGTATTGGGACATCGACCGAACGCTAATCGA
GTTTTATTTCTCTTAACCGATGGTACTCAATCGTTTTCACTCGATAAAGT
CGATAATCATTTGATATCGAGAAACATTCGATATTCGGGTACAGAGTTCT
TCGTCATCGGTGTGGGTCGTAGTGTGAAGAAAGACGAATTGGTCAAAATT
GCCGGTGGCGAAGAGCGAGTTTTCATTGCGGAAGATTTCGATAAATTGAG
CTCCAAAGAATTTATCGACCAATTTAATATGAGTTGCAGTTACATTCTCA
GTGGCCAATGCTGATGGAAACACAGTGAAGATCAATGGTGGACGAAACAG
CTGGTATCTTGATGTTGACAGTGGAACATTTCTATATCGAGTGAACGGTT
GAAACAAAGCAGAGCGCACCGTGTGTTCGTACACTTTTTGAACCAACTAC
CTTACACCGTCTACTTGAAATGTTCCTTCAAAAATCAAGTGGTTGCGCAG
TACAACATTTCTTCCAATAGAATGTATCATGTCTTCATGTTCGATCTGGA
AACTCACGGACAGGTGCGAGGTGAACGTTCAGGATCTTTCATTCCGATTT
TGAACGGACAAAGTGGACATTTGATATACCGATATAATCCGGTTGAAGAA
TTGGGCATCGTTCGTATAACTGACGGAGGTGATGTCGATTTTAGATACAG
TCAGAAATATTATCTAAATATCTTGTTCATCAGTGAAGCATCCCAAGACG
CTACTATTCAAATCGAAAGTGAAAGTGGAAATGCGAATGATAGAACGTCC
TTTGTTGTAACTGTCAATAGCCGTCAATCTTACAAGCGACAAATCTTGAC
GCAGAAAACTCGCAGCGTATTGGGACATCGACCGAACGCTAATCGAGTTT
TATTTCTCTTAACCGATGGTACTCAATCGTTTTCACTCGATAAAGTCGAT
AATCATTTGATATCGAGAAACATTCGATATTCGGGTACAGAGTTCTTCGT
CATCGGTGTGGGTCGTAGTGTGAAGAAAGACGAATTGGTCAAAATTGCCG
GTGGCGAAGAGCGAGTTTTCATTGCGGAAGATTTCGATAAATTGAGCTCC
AAAGAATTTATCGACCAATTTAATATGAGTTGCAGTTACATTCTCAGTGG
CCAATGCTGATGGAAACACAGTGAAGATCAATGGTGGACGAAACAGCTGG
TATCTTGATGTTGACAGTGGAACATTTCTATATCGAGTGAACGGTTGAAA
CAAAGCAGAGCGCACCGTGTGTTCGTACACTTTTTGAACCAACTACCTTA
CACCGTCTACTTGAAATGTTCCTTCAAAAATCAAGTGGTTGCGCAGTACA
ACATTTCTTCCAATAGAATGTATCATGTCTTCATGTTCGATCTGGAAACT
CACGGACAGGTGCGAGGTGAACGTTCAGGATCTTTCATTCCGATTTTGAA
CGGACAAAGTGGACATTTGATATACCGATATAATCCGGTTGAAGAATTGG
GCATCGTTCGTATAACTGACGGAGGTGATGTCGATTTTAGATACAGTCAG
AAATATTATCTAAATATCTTGTTCATCAGTGAAGCATCCCAAGACGCTAC
TATTCAAATCGAAAGTGAAAGTGGAAATGCGAATGATAGAACGTCCTTTG
TTGTAACTGTCAATAGCCGTCAATCTTACAAGCGACAAATCTTGACGCAG
AAAACTCGCAGCGTATTGGGACATCGACCGAACGCTAATCGAGTTTTATT
TCTCTTAACCGATGGTACTCAATCGTTTTCACTCGATAAAGTCGATAATC
ATTTGATATCGAGAAACATTCGATATTCGGGTACAGAGTTCTTCGTCATC
GGTGTGGGTCGTAGTGTGAAGAAAGACGAATTGGTCAAAATTGCCGGTGG
CGAAGAGCGAGTTTTCATTGCGGAAGATTTCGATAAATTGAGCTCCAAAG
AATTTATCGACCAATTTAATATGAGTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008675XLOC_008675Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015548-proteinTCONS_00015548-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015548-exon-sc0000212-1575043694:345994..346256TCONS_00015548-exon-sc0000212-1575043694:345994..346256Clytia hemisphaericaexon
TCONS_00015548-exon-sc0000212-1575043694:345381..345574TCONS_00015548-exon-sc0000212-1575043694:345381..345574Clytia hemisphaericaexon
TCONS_00015548-exon-sc0000212-1575043694:344852..344966TCONS_00015548-exon-sc0000212-1575043694:344852..344966Clytia hemisphaericaexon
TCONS_00015548-exon-sc0000212-1575043694:344244..344410TCONS_00015548-exon-sc0000212-1575043694:344244..344410Clytia hemisphaericaexon
TCONS_00015548-exon-sc0000212-1575043694:343773..343880TCONS_00015548-exon-sc0000212-1575043694:343773..343880Clytia hemisphaericaexon
TCONS_00015548-exon-sc0000212-1510915933:345994..346256TCONS_00015548-exon-sc0000212-1510915933:345994..346256Clytia hemisphaericaexon
TCONS_00015548-exon-sc0000212-1510915933:345381..345574TCONS_00015548-exon-sc0000212-1510915933:345381..345574Clytia hemisphaericaexon
TCONS_00015548-exon-sc0000212-1510915933:344852..344966TCONS_00015548-exon-sc0000212-1510915933:344852..344966Clytia hemisphaericaexon
TCONS_00015548-exon-sc0000212-1510915933:344244..344410TCONS_00015548-exon-sc0000212-1510915933:344244..344410Clytia hemisphaericaexon
TCONS_00015548-exon-sc0000212-1510915933:343773..343880TCONS_00015548-exon-sc0000212-1510915933:343773..343880Clytia hemisphaericaexon
TCONS_00015548-exon-sc0000212-1491911889:345994..346256TCONS_00015548-exon-sc0000212-1491911889:345994..346256Clytia hemisphaericaexon
TCONS_00015548-exon-sc0000212-1491911889:345381..345574TCONS_00015548-exon-sc0000212-1491911889:345381..345574Clytia hemisphaericaexon
TCONS_00015548-exon-sc0000212-1491911889:344852..344966TCONS_00015548-exon-sc0000212-1491911889:344852..344966Clytia hemisphaericaexon
TCONS_00015548-exon-sc0000212-1491911889:344244..344410TCONS_00015548-exon-sc0000212-1491911889:344244..344410Clytia hemisphaericaexon
TCONS_00015548-exon-sc0000212-1491911889:343773..343880TCONS_00015548-exon-sc0000212-1491911889:343773..343880Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:343773..346256 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139928	0.0542263	0.0778286	0.123197	0.628024	0.13173	0.396316	0.0745092	0.31902	0.139501	0.213021	0.363432	0.219943	0.360133	0.0701174	0.143286	0.333956	0.228119	0.538414	0	1.33653	0.559027	0.0637587	0.0635275	0.565435	0.57686	0.600678	0.519768	0.0671546	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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