TCONS_00015546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015546
Unique NameTCONS_00015546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015546 ID=TCONS_00015546|Name=TCONS_00015546|organism=Clytia hemisphaerica|type=transcript|length=577bp
GCAATCAGCATGGTTGAAGATCAAACCATTATTTTACAATGGATCCCCAA
GAACGGTATCCGTTTCCCTAACGCTGCTCCCAGGGAACTTGAACTAACTT
ACCAGGAAGATTCGGACCCGGATATTTATTTCTCCTTCAAAACACTTGCG
ATGTATAATGATGttgatttgtttgttttcaaaGCCAAGAATAAAAACAC
CAATAAACAGTTATTGGTGAATGGAAAACAAACCTTCGAATCAGGGATGG
GAACGTTCAATCGCAAGAATCCATTACGACTGGTTGTTAGCGACGTCAAA
GATGACTACTACGCCAACATACGCGTGGAAAACACTCTTGGATACACCAT
CTTTTTCGTATGGACATCAACAGTTACACCATCTTTCTATCTTTCATCGC
CTAATACCTACAAACTAGGTCCTACCCAAACTAAAAGCTATACTTTGAGA
GGAGGTTCAACTGCACCTTTGAGCAATGACCAATTGAAAGACGCTTTAGA
TATTTACGCATACAGACTTGATGATTTCACTGGAGAACGAAGATACCTTG
GTGTGAATAATGAACGAATTAATATTA
Run BLAST on NCBI

protein sequence of TCONS_00015546-protein

>TCONS_00015546-protein ID=TCONS_00015546-protein|Name=TCONS_00015546-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
AISMVEDQTIILQWIPKNGIRFPNAAPRELELTYQEDSDPDIYFSFKTLA
MYNDVDLFVFKAKNKNTNKQLLVNGKQTFESGMGTFNRKNPLRLVVSDVK
DDYYANIRVENTLGYTIFFVWTSTVTPSFYLSSPNTYKLGPTQTKSYTLR
GGSTAPLSNDQLKDALDIYAYRLDDFTGERRYLGVNNERINI
Run BLAST on NCBI

transcript from alignment at sc0000212:337149..337955-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015546 ID=TCONS_00015546|Name=TCONS_00015546|organism=Clytia hemisphaerica|type=transcript|length=807bp|location=Sequence derived from alignment at sc0000212:337149..337955- (Clytia hemisphaerica)
GCAATCAGCATGGTTGAAGATCAAACCATTATTTTACAATGGATCCCCAA
GAACGGTATCCGTTTCCCTAACGCTGCTCCCAGGGAACTTGAACTAACTT
ACCAGGAAGATTCGGACCCGGATATTTATTTCTCCTTCAAAACACTTGCG
ATGTATAATGATGTTGATTTGTTTGTTTTCAAAGCCAAGAATAAAAACAC
CAATAAACAGTTATTGGTGAATGGAAAACAAACCTTCGAATCAGGGATGG
GAACGTTCAATCGCAAGAATCCATTACGACTGGTTGTTAGCGACGTCAAA
GGTTTGTAAGCCCTAAGTTTTCCCAACACTTGGTTTTCATAAGACAAGAA
AAAATGTATTTGTATAATTTTGCAATTTTTCATTTTAACCCAAATTTTGC
TTGACATTCAAATTGATTTTTAGAATTAAGTAAGGCTACTATGTAAAATC
TTACATGTTTAAGCATAGGATAATAGCGAGTTATTTGTGAACGAAATATT
GCTAAAGATCATTTACTCTCATCATTCATAGATGACTACTACGCCAACAT
ACGCGTGGAAAACACTCTTGGATACACCATCTTTTTCGTATGGACATCAA
CAGTTACACCATCTTTCTATCTTTCATCGCCTAATACCTACAAACTAGGT
CCTACCCAAACTAAAAGCTATACTTTGAGAGGAGGTTCAACTGCACCTTT
GAGCAATGACCAATTGAAAGACGCTTTAGATATTTACGCATACAGACTTG
ATGATTTCACTGGAGAACGAAGATACCTTGGTGTGAATAATGAACGAATT
AATATTA

Coding sequence (CDS) from alignment at sc0000212:337149..337955-

>TCONS_00015546 ID=TCONS_00015546|Name=TCONS_00015546|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at sc0000212:337149..337955- (Clytia hemisphaerica)
ATGACTACTACGCCAACATACGCGTGGAAAACACTCTTGGATACACCATC
TTTTTCGTATGGACATCAACAGTTACACCATCTTTCTATCTTTCATCGCC
TAATACCTACAAACTAGGTCCTACCCAAACTAAAAGCTATACTTTGAGAG
GAGGTTCAACTGCACCTTTGAGCAATGACCAATTGAAAGACGCTTTAGAT
ATTTACGCATACAGACTTGATGATTTCACTGGAGAACGAAGATACCTTGG
TGTGAATAATGAACGAATTAATATTGCAATCAGCATGGTTGAAGATCAAA
CCATTATTTTACAATGGATCCCCAAGAACGGTATCCGTTTCCCTAACGCT
GCTCCCAGGGAACTTGAACTAACTTACCAGGAAGATTCGGACCCGGATAT
TTATTTCTCCTTCAAAACACTTGCGATGTATAATGATGTTGATTTGTTTG
TTTTCAAAGCCAAGAATAAAAACACCAATAAACAGTTATTGGTGAATGGA
AAACAAACCTTCGAATCAGGGATGGGAACGTTCAATCGCAAGAATCCATT
ACGACTGGTTGTTAGCGACGTCAAAGATGACTACTACGCCAACATACGCG
TGGAAAACACTCTTGGATACACCATCTTTTTCGTATGGACATCAACAGTT
ACACCATCTTTCTATCTTTCATCGCCTAATACCTACAAACTAGGTCCTAC
CCAAACTAAAAGCTATACTTTGAGAGGAGGTTCAACTGCACCTTTGAGCA
ATGACCAATTGAAAGACGCTTTAGATATTTACGCATACAGACTTGATGAT
TTCACTGGAGAACGAAGATACCTTGGTGTGAATAATGAACGAATTAATAT
TGCAATCAGCATGGTTGAAGATCAAACCATTATTTTACAATGGATCCCCA
AGAACGGTATCCGTTTCCCTAACGCTGCTCCCAGGGAACTTGAACTAACT
TACCAGGAAGATTCGGACCCGGATATTTATTTCTCCTTCAAAACACTTGC
GATGTATAATGATGTTGATTTGTTTGTTTTCAAAGCCAAGAATAAAAACA
CCAATAAACAGTTATTGGTGAATGGAAAACAAACCTTCGAATCAGGGATG
GGAACGTTCAATCGCAAGAATCCATTACGACTGGTTGTTAGCGACGTCAA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008673XLOC_008673Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015546-proteinTCONS_00015546-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015546-exon-sc0000212-1575043694:337655..337955TCONS_00015546-exon-sc0000212-1575043694:337655..337955Clytia hemisphaericaexon
TCONS_00015546-exon-sc0000212-1575043694:337149..337424TCONS_00015546-exon-sc0000212-1575043694:337149..337424Clytia hemisphaericaexon
TCONS_00015546-exon-sc0000212-1510915933:337655..337955TCONS_00015546-exon-sc0000212-1510915933:337655..337955Clytia hemisphaericaexon
TCONS_00015546-exon-sc0000212-1510915933:337149..337424TCONS_00015546-exon-sc0000212-1510915933:337149..337424Clytia hemisphaericaexon
TCONS_00015546-exon-sc0000212-1491911889:337655..337955TCONS_00015546-exon-sc0000212-1491911889:337655..337955Clytia hemisphaericaexon
TCONS_00015546-exon-sc0000212-1491911889:337149..337424TCONS_00015546-exon-sc0000212-1491911889:337149..337424Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:337149..337955 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.147443	0.282036	0	0.463712	1.08417	1.59163	1.4395	1.98468	0.73575	0.241004	0.237205	0.642	0.45706	0.230642	0.35706	0.434554	0	0.190607	0.39794	0.115324	1.14285	1.09117	0.469614	0.2467	0.766249	1.47996	0.997999	1.24657	0.470714	0.782188
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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