TCONS_00015538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015538
Unique NameTCONS_00015538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2103

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015538 ID=TCONS_00015538|Name=TCONS_00015538|organism=Clytia hemisphaerica|type=transcript|length=2103bp
ACCAAATCTGTCGTAAAACACAAAGCCTTCCTTTGTTTGAGTTATGTAAC
AAAGAAACACAAGCTGGTAAATAATTATTCGGTCCAGCAGGCGCCGGTAT
GTATAAAAGTCAGCATCATAGCATATTCAATTATTGAACTTTCATACTTT
TCAAGAACTCACAACATTGAAGCTTGGTTAAGAAAAATACAATTCGATTT
TGCTAGAATAGCTTTACAATGAATTTAACAACTTCGGCTCCGGCAGATAA
CCCGTTTGGTGGCTCTGAAGGCGGAGAGGCTGTTGATGCATTATGGGTTA
TTATGGCAACTTTTATCATCTTCACAATGCAATCTGGTTTCGGCTTATTG
GAATCAGGAATAGTCTCAAGAAAAAGCGAGTCAAATGTGATGGTGAAAAA
TGTTCTCGATGTCTGTCTTGGTGGAATCACATTCTGGTTGTTTGGTTTCG
GTTTCATTTTCGGACCTGATTCTAGTGAAAATGTGAATAAATTCAGTGGA
ACAGGACATTGGGCAGTTACTGTAGATGTGGAAAATGAAGCAGCTACTTA
TACGCAAATGTTTTTTCATCTGTCGTTCTCCACGGCTGCTACCACTATCG
TCTCAGgTGCTGTGGCTGAGCGTGTCCATCTTCCATCGTACATGATTTTT
GCCGCTATCAACACAGGTTTCATCTACGTTTTTCCTGCACATTGGGCGTG
GGGTGATGGTTGGTTGGGTCAAGAAGCTTTCTTCGATTTTGCTGGCTCAT
CAGTGGTCCATATGGCGGGTGGTATTGCCGCTCTTGCTGCCGCCATCATC
TTGGGTCCACGCCATGGGCGTTTCGATACTAAAGGCGCATATGGCATGTC
AAGCCCTACTAATGTCATTTTGGGAACATTCTTTTTGTGGTGGGGATGGA
TTGGGTTCAACTGTGGCTCCACCTTCGCTGTCACTGGAGGTGGTTGGAAA
ATTGCCAGTAAAACAGCAGTTGTTACGATGAATGGAGCTATGGCTGGAGG
ATTATCAGCTGTGTTCCTTTCTGCTATACTTTACTTATCACACAGACGAA
AGTATATTTTAGACATCACGTTTTTAGCATCTGGTATTTTGGGCGGATTG
GTTGGCGTGACTGCTTGCGCCCCTATTATTCGACCCTGGGAAGGTCTTTT
TCTTGGATTCGTTGGAGGAATGATTGCTAATGGAGTCAACGAACTGTTAA
TCAAATTGAAGATTGACGATCCAGTTGGAGCTTTTGGAGTTCATTATGCT
GCTGGATTATGGTCGATGATCGCTACTGGTTTCTTTGCAGAGAAAATCCC
TGGTATTGGTTTAGCTCCGGAAGATGGCGTCTTTAAGGGCGGTAATGGTG
GCCTATTGGCGTGGAATCTTGCTGGATGTTTGGCAATCACTTTGTGGAGT
GGTGGTTTAGCTACTATCGTGTTCTTGACACTGAAATACACAATTGGAAT
CCGTATGTCTTTGGATCATGAATTGAAAGGCTCTGACGCGGTTGAGCATA
ACATCCATGAGGTACCCAAACCTCAAGAACGAAACCACGCCCTGGGAAAG
ACGGTTGAATATCCTGAGAGAGAAAGCCCTGTTCATGTTCAAATGGTCAA
AGCAAATAATTTTGCTGCTTAAGAAAACTTTTCAGATTTTATATTTAAAG
TATTTTGAACTTTCTTTGAGAAAGATCAATATTaaaatttgtatatattt
ttttgtctaGAATTTTGTAATGAAATAGTTAAATTTGAGAACATATCTTT
TTAAGCATAAAACTTATTACTTTCTATACAGGCCATTAAGTTTTCAGACC
TTCGGACCTATTGGACCAGTTTTCAATATCAGTTAATCAAAGTCTTTTAT
CTTGGTTTTTTAACCATTTGAAACCTTtacactcaaaaaattaaatggCT
TCACATGAAATTAATCGACAGTAAGTATCGATATTGGACAAATTCTTCAC
TAAATTGATTCAGCAGAAATTCCAAGGTCTCTTATTCGTTGTTTGTCGTT
TGTCTGACAAACATATCCTGTTTTGACGGTTAAGATGAAAAAGGTGGATA
ATTACTGAATTCCGAAAATTAATAACACACCCAATTTCTAGTGTCCGCTG
TCT
Run BLAST on NCBI

protein sequence of Ammonium transporter

>TCONS_00015538-protein ID=TCONS_00015538-protein|Name=Ammonium transporter|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
MNLTTSAPADNPFGGSEGGEAVDALWVIMATFIIFTMQSGFGLLESGIVS
RKSESNVMVKNVLDVCLGGITFWLFGFGFIFGPDSSENVNKFSGTGHWAV
TVDVENEAATYTQMFFHLSFSTAATTIVSGAVAERVHLPSYMIFAAINTG
FIYVFPAHWAWGDGWLGQEAFFDFAGSSVVHMAGGIAALAAAIILGPRHG
RFDTKGAYGMSSPTNVILGTFFLWWGWIGFNCGSTFAVTGGGWKIASKTA
VVTMNGAMAGGLSAVFLSAILYLSHRRKYILDITFLASGILGGLVGVTAC
APIIRPWEGLFLGFVGGMIANGVNELLIKLKIDDPVGAFGVHYAAGLWSM
IATGFFAEKIPGIGLAPEDGVFKGGNGGLLAWNLAGCLAITLWSGGLATI
VFLTLKYTIGIRMSLDHELKGSDAVEHNIHEVPKPQERNHALGKTVEYPE
RESPVHVQMVKANNFAA
Run BLAST on NCBI

transcript from alignment at sc0000212:287672..291055-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015538 ID=TCONS_00015538|Name=TCONS_00015538|organism=Clytia hemisphaerica|type=transcript|length=3384bp|location=Sequence derived from alignment at sc0000212:287672..291055- (Clytia hemisphaerica)
ACCAAATCTGTCGTAAAACACAAAGCCTTCCTTTGTTTGAGTTATGTAAC
AAAGAAACACAAGCTGGTAAATAATTATTCGGTCCAGCAGGCGCCGGTAT
GTATAAAAGTCAGCATCATAGCATATTCAATTATTGAACTTTCATACTTT
TCAAGAACTCACAACATTGAAGCTTGGTTAAGAAAAATACAATTCGATTT
TGCTAGAATAGCTTTACAATGAATTTAACAACTTCGGCTCCGGCAGATAA
CCCGTTTGGTGGCTCTGAAGGCGGAGAGGCTGTTGATGCATTATGGGTTA
TTATGGCAACTTTTATCATCTTCACAATGCAATCTGGTTTCGGCTTATTG
GAATCAGGTAAGCTCGCATATGTTGCGAATTTCTCGAATTTAATTGTTTT
TAGTTAGTTTTCCATAAAATTACCAACAATATGGTATACTCAAAGGTCCC
TGATACCCCTTTGTCTCATACCTTTATTCTCTACGTTTAATTTTTTTTAT
TTTCCCTTTTTCCAGGAATAGTCTCAAGAAAAAGCGAGTCAAATGTGATG
GTGAAAAATGTTCTCGATGTCTGTCTTGGTGGAATCACATTCTGGTTGTT
TGGTTTCGGTTTCATTTTCGGACCTGATTCTAGTGAAAATGTGAATAAAT
TCAGTGGAACAGGACATTGGGCAGTTACTGTAGATGTGGAAAATGAAGCA
GCTACTTATACGCAAATGTTTTTTCATCTGTCGTTCTCCACGGCTGCTAC
CACTATCGTCTCAGGTTGGTTTTTTATAATGATAATTAATTCTTGGCAAT
TTCACAACTATTAAGATCTCTCTTGTCATGACTCATTAATCCTTATATAG
GTTCGTCTCCCCCTCTATCCAACAAAGTTAACCAAGCTAACCATGAGAAA
GTATAAAGATCTGTCAATCAGATTTAGAATTTTCTTATTGTTAACAATGA
AACTTTTTAACATTAGAAAACTAATATTCGATAATTTGTTTTTTACTTTT
AAGGTGCTGTGGCTGAGCGTGTCCATCTTCCATCGTACATGATTTTTGCC
GCTATCAACACAGGTTTCATCTACGTTTTTCCTGCACATTGGGCGTGGGG
TGATGGTTGGTTGGGTCAAGAAGCTTTCTTCGATTTTGCTGGCTCATCAG
TGGTCCATATGGCGGGTGGTATTGCCGCTCTTGCTGCCGCCATCATCTTG
GGTCCACGCCATGGGCGTTTCGATACTAAAGGCGCATATGGCATGTCAAG
CCCTACTAATGTCATTTTGGGAACATTCTTTTTGTGGTGGGGATGGATTG
GGTTCAACTGTGGCTCCACCTTCGCTGTCACTGGAGGTGGTTGGAAAATT
GCCAGTAAAACAGCAGTTGTTACGATGAATGGAGCTATGGCTGGAGGATT
ATCAGCTGTGTTCCTTTCTGCTATACTTTACTTATCACACAGACGAAAGT
ATATTTTAGACATCACGTTTTTAGCATCTGGTATTTTGGGCGGATTGGTT
GGCGTGACTGCTTGCGCCCCTATTATTCGACCCTGGGAAGGTCTTTTTCT
TGGATTCGTTGGAGGAATGATTGCTAATGGAGGTAAGATAGTATTGAATT
TGAATCATAAATAACCTCATAGCTCATACAATCAGTGCCATAATATATTG
GCACTTTTGGCTAATTTACCATTTTTCGAAAATTGAAGATCGAGCGAGAA
TGTCAACTTCAGGCCTTCAACTTAATTTCATCGATTATTTCGATCTGGGA
GGGATTTATTGGCTATATTTCAAGCCCTAATGGACCATTTTTGAACTTTT
GGATCCTCAAATCCTAAGTTCGTAAGTCTTAAATCTAGCGTTAAAACTCA
GAGTTATAACTCTACCCTTCGAATCTATTTTAGAGCACTTGCAAATCGAT
TGTGGTTTCAAAACACCCCAGTAAATTTCCCTTTTGTGCCAAGTATTTTG
TGACTGATTGTAGTTCGAAGTTTAAGGCTATACACTTAACAGTGCTTGCG
TTAAAATTTGTATTAAAAAGAAGAGGTTAAAAGAGTCGTCAAATGTATGC
CCTTGCATTTATTCAGTGACAAGTCAACTTGGTAACCTCGTACACAGTCA
CTTCAAAGTGTCTTTTTATCTCGGTTTTTGCCTTGCGGTGGCCTTTTAAA
TGAAAAATGTTGTATTTAAATCTCCGAATCTTTTTTTTCTCTAGTCAACG
AACTGTTAATCAAATTGAAGATTGACGATCCAGTTGGAGCTTTTGGAGTT
CATTATGCTGCTGGATTATGGTCGATGATCGCTACTGGTTTCTTTGCAGA
GAAAATCCCTGGTATTGGTTTAGCTCCGGAAGATGGCGTCTTTAAGGGCG
GTAATGGTGGCCTATTGGCGTGGAATCTTGCTGGATGTTTGGCAATCACT
TTGTGGAGTGGTGGTTTAGCTACTATCGTGGTAAGTTATTTTAACTACTT
GTACTTATTGTTAAATTGTTAAATTGTTAATACTAGTCTCGTCACAAAAC
CTTTAGCCGTTCTCCCAGATCTCTCCATAAAAATCAAAAGGGAACTATTG
AAAACTCTTGAAATTAATTTAAGATCTTATATTGACAAGCCCAATATTTG
AATAAACCATTAATTGAAAGATTTAACTTTAATTTATCCATCTAATTCAA
TACCTATCCAATATTTCTATCAATACAAAACTATCCTCTCTTTTCTTTTC
AGTTCTTGACACTGAAATACACAATTGGAATCCGTATGTCTTTGGATCAT
GAATTGAAAGGCTCTGACGCGGTTGAGCATAACATCCATGAGGTACCCAA
ACCTCAAGAACGAAACCACGCCCTGGGAAAGACGGTTGAATATCCTGAGA
GAGAAAGCCCTGTTCATGTTCAAATGGTCAAAGCAAATAATTTTGCTGCT
TAAGAAAACTTTTCAGATTTTATATTTAAAGTATTTTGAACTTTCTTTGA
GAAAGATCAATATTAAAATTTGTATATATTTTTTTGTCTAGAATTTTGTA
ATGAAATAGTTAAATTTGAGAACATATCTTTTTAAGCATAAAACTTATTA
CTTTCTATACAGGCCATTAAGTTTTCAGACCTTCGGACCTATTGGACCAG
TTTTCAATATCAGTTAATCAAAGTCTTTTATCTTGGTTTTTTAACCATTT
GAAACCTTTACACTCAAAAAATTAAATGGCTTCACATGAAATTAATCGAC
AGTAAGTATCGATATTGGACAAATTCTTCACTAAATTGATTCAGCAGAAA
TTCCAAGGTCTCTTATTCGTTGTTTGTCGTTTGTCTGACAAACATATCCT
GTTTTGACGGTTAAGATGAAAAAGGTGGATAATTACTGAATTCCGAAAAT
TAATAACACACCCAATTTCTAGTGTCCGCTGTCT

Coding sequence (CDS) from alignment at sc0000212:287672..291055-

>TCONS_00015538 ID=TCONS_00015538|Name=TCONS_00015538|organism=Clytia hemisphaerica|type=CDS|length=7020bp|location=Sequence derived from alignment at sc0000212:287672..291055- (Clytia hemisphaerica)
TTCTTGACACTGAAATACACAATTGGAATCCGTATGTCTTTGGATCATGA
ATTGAAAGGCTCTGACGCGGTTGAGCATAACATCCATGAGGTACCCAAAC
CTCAAGAACGAAACCACGCCCTGGGAAAGACGGTTGAATATCCTGAGAGA
GAAAGCCCTGTTCATGTTCAAATGGTCAAAGCAAATAATTTTGCTGCTTA
ATCAACGAACTGTTAATCAAATTGAAGATTGACGATCCAGTTGGAGCTTT
TGGAGTTCATTATGCTGCTGGATTATGGTCGATGATCGCTACTGGTTTCT
TTGCAGAGAAAATCCCTGGTATTGGTTTAGCTCCGGAAGATGGCGTCTTT
AAGGGCGGTAATGGTGGCCTATTGGCGTGGAATCTTGCTGGATGTTTGGC
AATCACTTTGTGGAGTGGTGGTTTAGCTACTATCGTGGTGCTGTGGCTGA
GCGTGTCCATCTTCCATCGTACATGATTTTTGCCGCTATCAACACAGGTT
TCATCTACGTTTTTCCTGCACATTGGGCGTGGGGTGATGGTTGGTTGGGT
CAAGAAGCTTTCTTCGATTTTGCTGGCTCATCAGTGGTCCATATGGCGGG
TGGTATTGCCGCTCTTGCTGCCGCCATCATCTTGGGTCCACGCCATGGGC
GTTTCGATACTAAAGGCGCATATGGCATGTCAAGCCCTACTAATGTCATT
TTGGGAACATTCTTTTTGTGGTGGGGATGGATTGGGTTCAACTGTGGCTC
CACCTTCGCTGTCACTGGAGGTGGTTGGAAAATTGCCAGTAAAACAGCAG
TTGTTACGATGAATGGAGCTATGGCTGGAGGATTATCAGCTGTGTTCCTT
TCTGCTATACTTTACTTATCACACAGACGAAAGTATATTTTAGACATCAC
GTTTTTAGCATCTGGTATTTTGGGCGGATTGGTTGGCGTGACTGCTTGCG
CCCCTATTATTCGACCCTGGGAAGGTCTTTTTCTTGGATTCGTTGGAGGA
ATGATTGCTAATGGAGGAATAGTCTCAAGAAAAAGCGAGTCAAATGTGAT
GGTGAAAAATGTTCTCGATGTCTGTCTTGGTGGAATCACATTCTGGTTGT
TTGGTTTCGGTTTCATTTTCGGACCTGATTCTAGTGAAAATGTGAATAAA
TTCAGTGGAACAGGACATTGGGCAGTTACTGTAGATGTGGAAAATGAAGC
AGCTACTTATACGCAAATGTTTTTTCATCTGTCGTTCTCCACGGCTGCTA
CCACTATCGTCTCAGATGAATTTAACAACTTCGGCTCCGGCAGATAACCC
GTTTGGTGGCTCTGAAGGCGGAGAGGCTGTTGATGCATTATGGGTTATTA
TGGCAACTTTTATCATCTTCACAATGCAATCTGGTTTCGGCTTATTGGAA
TCAGTTCTTGACACTGAAATACACAATTGGAATCCGTATGTCTTTGGATC
ATGAATTGAAAGGCTCTGACGCGGTTGAGCATAACATCCATGAGGTACCC
AAACCTCAAGAACGAAACCACGCCCTGGGAAAGACGGTTGAATATCCTGA
GAGAGAAAGCCCTGTTCATGTTCAAATGGTCAAAGCAAATAATTTTGCTG
CTTAATCAACGAACTGTTAATCAAATTGAAGATTGACGATCCAGTTGGAG
CTTTTGGAGTTCATTATGCTGCTGGATTATGGTCGATGATCGCTACTGGT
TTCTTTGCAGAGAAAATCCCTGGTATTGGTTTAGCTCCGGAAGATGGCGT
CTTTAAGGGCGGTAATGGTGGCCTATTGGCGTGGAATCTTGCTGGATGTT
TGGCAATCACTTTGTGGAGTGGTGGTTTAGCTACTATCGTGGTGCTGTGG
CTGAGCGTGTCCATCTTCCATCGTACATGATTTTTGCCGCTATCAACACA
GGTTTCATCTACGTTTTTCCTGCACATTGGGCGTGGGGTGATGGTTGGTT
GGGTCAAGAAGCTTTCTTCGATTTTGCTGGCTCATCAGTGGTCCATATGG
CGGGTGGTATTGCCGCTCTTGCTGCCGCCATCATCTTGGGTCCACGCCAT
GGGCGTTTCGATACTAAAGGCGCATATGGCATGTCAAGCCCTACTAATGT
CATTTTGGGAACATTCTTTTTGTGGTGGGGATGGATTGGGTTCAACTGTG
GCTCCACCTTCGCTGTCACTGGAGGTGGTTGGAAAATTGCCAGTAAAACA
GCAGTTGTTACGATGAATGGAGCTATGGCTGGAGGATTATCAGCTGTGTT
CCTTTCTGCTATACTTTACTTATCACACAGACGAAAGTATATTTTAGACA
TCACGTTTTTAGCATCTGGTATTTTGGGCGGATTGGTTGGCGTGACTGCT
TGCGCCCCTATTATTCGACCCTGGGAAGGTCTTTTTCTTGGATTCGTTGG
AGGAATGATTGCTAATGGAGGAATAGTCTCAAGAAAAAGCGAGTCAAATG
TGATGGTGAAAAATGTTCTCGATGTCTGTCTTGGTGGAATCACATTCTGG
TTGTTTGGTTTCGGTTTCATTTTCGGACCTGATTCTAGTGAAAATGTGAA
TAAATTCAGTGGAACAGGACATTGGGCAGTTACTGTAGATGTGGAAAATG
AAGCAGCTACTTATACGCAAATGTTTTTTCATCTGTCGTTCTCCACGGCT
GCTACCACTATCGTCTCAGATGAATTTAACAACTTCGGCTCCGGCAGATA
ACCCGTTTGGTGGCTCTGAAGGCGGAGAGGCTGTTGATGCATTATGGGTT
ATTATGGCAACTTTTATCATCTTCACAATGCAATCTGGTTTCGGCTTATT
GGAATCAGTTCTTGACACTGAAATACACAATTGGAATCCGTATGTCTTTG
GATCATGAATTGAAAGGCTCTGACGCGGTTGAGCATAACATCCATGAGGT
ACCCAAACCTCAAGAACGAAACCACGCCCTGGGAAAGACGGTTGAATATC
CTGAGAGAGAAAGCCCTGTTCATGTTCAAATGGTCAAAGCAAATAATTTT
GCTGCTTAATCAACGAACTGTTAATCAAATTGAAGATTGACGATCCAGTT
GGAGCTTTTGGAGTTCATTATGCTGCTGGATTATGGTCGATGATCGCTAC
TGGTTTCTTTGCAGAGAAAATCCCTGGTATTGGTTTAGCTCCGGAAGATG
GCGTCTTTAAGGGCGGTAATGGTGGCCTATTGGCGTGGAATCTTGCTGGA
TGTTTGGCAATCACTTTGTGGAGTGGTGGTTTAGCTACTATCGTGGTGCT
GTGGCTGAGCGTGTCCATCTTCCATCGTACATGATTTTTGCCGCTATCAA
CACAGGTTTCATCTACGTTTTTCCTGCACATTGGGCGTGGGGTGATGGTT
GGTTGGGTCAAGAAGCTTTCTTCGATTTTGCTGGCTCATCAGTGGTCCAT
ATGGCGGGTGGTATTGCCGCTCTTGCTGCCGCCATCATCTTGGGTCCACG
CCATGGGCGTTTCGATACTAAAGGCGCATATGGCATGTCAAGCCCTACTA
ATGTCATTTTGGGAACATTCTTTTTGTGGTGGGGATGGATTGGGTTCAAC
TGTGGCTCCACCTTCGCTGTCACTGGAGGTGGTTGGAAAATTGCCAGTAA
AACAGCAGTTGTTACGATGAATGGAGCTATGGCTGGAGGATTATCAGCTG
TGTTCCTTTCTGCTATACTTTACTTATCACACAGACGAAAGTATATTTTA
GACATCACGTTTTTAGCATCTGGTATTTTGGGCGGATTGGTTGGCGTGAC
TGCTTGCGCCCCTATTATTCGACCCTGGGAAGGTCTTTTTCTTGGATTCG
TTGGAGGAATGATTGCTAATGGAGGAATAGTCTCAAGAAAAAGCGAGTCA
AATGTGATGGTGAAAAATGTTCTCGATGTCTGTCTTGGTGGAATCACATT
CTGGTTGTTTGGTTTCGGTTTCATTTTCGGACCTGATTCTAGTGAAAATG
TGAATAAATTCAGTGGAACAGGACATTGGGCAGTTACTGTAGATGTGGAA
AATGAAGCAGCTACTTATACGCAAATGTTTTTTCATCTGTCGTTCTCCAC
GGCTGCTACCACTATCGTCTCAGATGAATTTAACAACTTCGGCTCCGGCA
GATAACCCGTTTGGTGGCTCTGAAGGCGGAGAGGCTGTTGATGCATTATG
GGTTATTATGGCAACTTTTATCATCTTCACAATGCAATCTGGTTTCGGCT
TATTGGAATCAGTTCTTGACACTGAAATACACAATTGGAATCCGTATGTC
TTTGGATCATGAATTGAAAGGCTCTGACGCGGTTGAGCATAACATCCATG
AGGTACCCAAACCTCAAGAACGAAACCACGCCCTGGGAAAGACGGTTGAA
TATCCTGAGAGAGAAAGCCCTGTTCATGTTCAAATGGTCAAAGCAAATAA
TTTTGCTGCTTAATCAACGAACTGTTAATCAAATTGAAGATTGACGATCC
AGTTGGAGCTTTTGGAGTTCATTATGCTGCTGGATTATGGTCGATGATCG
CTACTGGTTTCTTTGCAGAGAAAATCCCTGGTATTGGTTTAGCTCCGGAA
GATGGCGTCTTTAAGGGCGGTAATGGTGGCCTATTGGCGTGGAATCTTGC
TGGATGTTTGGCAATCACTTTGTGGAGTGGTGGTTTAGCTACTATCGTGG
TGCTGTGGCTGAGCGTGTCCATCTTCCATCGTACATGATTTTTGCCGCTA
TCAACACAGGTTTCATCTACGTTTTTCCTGCACATTGGGCGTGGGGTGAT
GGTTGGTTGGGTCAAGAAGCTTTCTTCGATTTTGCTGGCTCATCAGTGGT
CCATATGGCGGGTGGTATTGCCGCTCTTGCTGCCGCCATCATCTTGGGTC
CACGCCATGGGCGTTTCGATACTAAAGGCGCATATGGCATGTCAAGCCCT
ACTAATGTCATTTTGGGAACATTCTTTTTGTGGTGGGGATGGATTGGGTT
CAACTGTGGCTCCACCTTCGCTGTCACTGGAGGTGGTTGGAAAATTGCCA
GTAAAACAGCAGTTGTTACGATGAATGGAGCTATGGCTGGAGGATTATCA
GCTGTGTTCCTTTCTGCTATACTTTACTTATCACACAGACGAAAGTATAT
TTTAGACATCACGTTTTTAGCATCTGGTATTTTGGGCGGATTGGTTGGCG
TGACTGCTTGCGCCCCTATTATTCGACCCTGGGAAGGTCTTTTTCTTGGA
TTCGTTGGAGGAATGATTGCTAATGGAGGAATAGTCTCAAGAAAAAGCGA
GTCAAATGTGATGGTGAAAAATGTTCTCGATGTCTGTCTTGGTGGAATCA
CATTCTGGTTGTTTGGTTTCGGTTTCATTTTCGGACCTGATTCTAGTGAA
AATGTGAATAAATTCAGTGGAACAGGACATTGGGCAGTTACTGTAGATGT
GGAAAATGAAGCAGCTACTTATACGCAAATGTTTTTTCATCTGTCGTTCT
CCACGGCTGCTACCACTATCGTCTCAGATGAATTTAACAACTTCGGCTCC
GGCAGATAACCCGTTTGGTGGCTCTGAAGGCGGAGAGGCTGTTGATGCAT
TATGGGTTATTATGGCAACTTTTATCATCTTCACAATGCAATCTGGTTTC
GGCTTATTGGAATCAGTTCTTGACACTGAAATACACAATTGGAATCCGTA
TGTCTTTGGATCATGAATTGAAAGGCTCTGACGCGGTTGAGCATAACATC
CATGAGGTACCCAAACCTCAAGAACGAAACCACGCCCTGGGAAAGACGGT
TGAATATCCTGAGAGAGAAAGCCCTGTTCATGTTCAAATGGTCAAAGCAA
ATAATTTTGCTGCTTAATCAACGAACTGTTAATCAAATTGAAGATTGACG
ATCCAGTTGGAGCTTTTGGAGTTCATTATGCTGCTGGATTATGGTCGATG
ATCGCTACTGGTTTCTTTGCAGAGAAAATCCCTGGTATTGGTTTAGCTCC
GGAAGATGGCGTCTTTAAGGGCGGTAATGGTGGCCTATTGGCGTGGAATC
TTGCTGGATGTTTGGCAATCACTTTGTGGAGTGGTGGTTTAGCTACTATC
GTGGTGCTGTGGCTGAGCGTGTCCATCTTCCATCGTACATGATTTTTGCC
GCTATCAACACAGGTTTCATCTACGTTTTTCCTGCACATTGGGCGTGGGG
TGATGGTTGGTTGGGTCAAGAAGCTTTCTTCGATTTTGCTGGCTCATCAG
TGGTCCATATGGCGGGTGGTATTGCCGCTCTTGCTGCCGCCATCATCTTG
GGTCCACGCCATGGGCGTTTCGATACTAAAGGCGCATATGGCATGTCAAG
CCCTACTAATGTCATTTTGGGAACATTCTTTTTGTGGTGGGGATGGATTG
GGTTCAACTGTGGCTCCACCTTCGCTGTCACTGGAGGTGGTTGGAAAATT
GCCAGTAAAACAGCAGTTGTTACGATGAATGGAGCTATGGCTGGAGGATT
ATCAGCTGTGTTCCTTTCTGCTATACTTTACTTATCACACAGACGAAAGT
ATATTTTAGACATCACGTTTTTAGCATCTGGTATTTTGGGCGGATTGGTT
GGCGTGACTGCTTGCGCCCCTATTATTCGACCCTGGGAAGGTCTTTTTCT
TGGATTCGTTGGAGGAATGATTGCTAATGGAGGAATAGTCTCAAGAAAAA
GCGAGTCAAATGTGATGGTGAAAAATGTTCTCGATGTCTGTCTTGGTGGA
ATCACATTCTGGTTGTTTGGTTTCGGTTTCATTTTCGGACCTGATTCTAG
TGAAAATGTGAATAAATTCAGTGGAACAGGACATTGGGCAGTTACTGTAG
ATGTGGAAAATGAAGCAGCTACTTATACGCAAATGTTTTTTCATCTGTCG
TTCTCCACGGCTGCTACCACTATCGTCTCAGATGAATTTAACAACTTCGG
CTCCGGCAGATAACCCGTTTGGTGGCTCTGAAGGCGGAGAGGCTGTTGAT
GCATTATGGGTTATTATGGCAACTTTTATCATCTTCACAATGCAATCTGG
TTTCGGCTTATTGGAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008668XLOC_008668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015538-exon-sc0000212-1575043694:290699..291055TCONS_00015538-exon-sc0000212-1575043694:290699..291055Clytia hemisphaericaexon
TCONS_00015538-exon-sc0000212-1575043694:290292..290540TCONS_00015538-exon-sc0000212-1575043694:290292..290540Clytia hemisphaericaexon
TCONS_00015538-exon-sc0000212-1575043694:289474..290052TCONS_00015538-exon-sc0000212-1575043694:289474..290052Clytia hemisphaericaexon
TCONS_00015538-exon-sc0000212-1575043694:288626..288861TCONS_00015538-exon-sc0000212-1575043694:288626..288861Clytia hemisphaericaexon
TCONS_00015538-exon-sc0000212-1575043694:287672..288353TCONS_00015538-exon-sc0000212-1575043694:287672..288353Clytia hemisphaericaexon
TCONS_00015538-exon-sc0000212-1510915933:290699..291055TCONS_00015538-exon-sc0000212-1510915933:290699..291055Clytia hemisphaericaexon
TCONS_00015538-exon-sc0000212-1510915933:290292..290540TCONS_00015538-exon-sc0000212-1510915933:290292..290540Clytia hemisphaericaexon
TCONS_00015538-exon-sc0000212-1510915933:289474..290052TCONS_00015538-exon-sc0000212-1510915933:289474..290052Clytia hemisphaericaexon
TCONS_00015538-exon-sc0000212-1510915933:288626..288861TCONS_00015538-exon-sc0000212-1510915933:288626..288861Clytia hemisphaericaexon
TCONS_00015538-exon-sc0000212-1510915933:287672..288353TCONS_00015538-exon-sc0000212-1510915933:287672..288353Clytia hemisphaericaexon
TCONS_00015538-exon-sc0000212-1491911889:290699..291055TCONS_00015538-exon-sc0000212-1491911889:290699..291055Clytia hemisphaericaexon
TCONS_00015538-exon-sc0000212-1491911889:290292..290540TCONS_00015538-exon-sc0000212-1491911889:290292..290540Clytia hemisphaericaexon
TCONS_00015538-exon-sc0000212-1491911889:289474..290052TCONS_00015538-exon-sc0000212-1491911889:289474..290052Clytia hemisphaericaexon
TCONS_00015538-exon-sc0000212-1491911889:288626..288861TCONS_00015538-exon-sc0000212-1491911889:288626..288861Clytia hemisphaericaexon
TCONS_00015538-exon-sc0000212-1491911889:287672..288353TCONS_00015538-exon-sc0000212-1491911889:287672..288353Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Ammonium transporterTCONS_00015538-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:287672..291055 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
83.0407	71.6015	63.8669	63.7331	4.16943	3.05795	5.78801	6.38215	11.4325	58.5381	10.0117	118.167	54.7649	32.7552	36.5782	115.958	9.58755	36.8294	3.51653	5.6554	0.168367	0.0313741	11.8279	14.7716	0.0990145	0.105884	3.69177	1.84352	2.88623	3.68437
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001905Ammonium_transpt
IPR024041NH4_transpt_AmtB-like_dom
IPR018047Ammonium_transpt_CS
Vocabulary: Molecular Function
TermDefinition
GO:0008519ammonium transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0072488ammonium transmembrane transport
GO:0015696ammonium transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0072488 ammonium transmembrane transport
biological_process GO:0015696 ammonium transport
cellular_component GO:0016020 membrane
molecular_function GO:0008519 ammonium transmembrane transporter activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top