TCONS_00015537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015537
Unique NameTCONS_00015537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015537 ID=TCONS_00015537|Name=TCONS_00015537|organism=Clytia hemisphaerica|type=transcript|length=2757bp
GAAGAAAGTAATCTCATCTCAAAGGGAAGGAAGCATTATACGTTTGGTTG
GCTATTTGTTGGGTGTTTCttctgaaaaaagttttgagtgaaaaatcgaA
ATCCAGCGAAGTTCGGTATAGACGAGAAAAATGGACGAGGAAAGGCGACG
AGAAAGGAACAAAAATGCCATGATCAAATCGATCGAGGAGATTAATAAAC
TAACAAAAGAAGTCATGTTCAAAACAACGGAAATCAAAGAAACGATACAA
ATGTACCAAAGTTCATCTCCGATTGACGATGACGACTCGCCAAATACAGA
AGCGGATTCATATCGGCCAGACGGAGAAGATAAGAAAGCTTTAAATAAAT
CGATCGCACAGGCTAGGCGACGGATACAAGACACGGTCGATCAGATCAAG
TCAACTCGTGAAGGAATCCGCGTCGAGCACATCAAAAGAGGAGAATTATT
CAAGAGGTTATCAGATCTTAAAGCGAAGGAAAACGAAAAGAAATCTCACC
ATTTGTCAACTGAAGACCAATATGAGAATAAGATCACTGTCCAAAAAGTG
AAAACTGTGTCGGGAGTGACTAATTATATGGGAAATAATGCTAAAAGACG
ACCACGCAAAAATCTTTTATCACCACAAGACATTTAATGGCAAGTTTTTA
CTAATTCACAATTATCTTAACTTGTATGTGTTTAACCGGACTTTCTCTAG
AGCATGTCCCTTCAAGGTTATACATAACTAACTAGAACTATCAGCTATTT
AATTCCTCTTATTTTATGATCAATCAACGTAGAAATGCTGTGTTGAAAGT
ACTTTGCCCCTCCTAAGTTATTGGAAGAAAGCAGCAAGAAACTTGTTACT
TTACGGAATgatttttgcaatatttattttttcgagAGCTTGAAAAACTT
TGCgcgaatttaatttcgcgggtcAGCGTAGATGGGCCCGAAAATGGGCT
GAAAATGGACTCGAAAATGCCAATTAGCcaaaaaaatggagaaaaaatgt
aacaataaacttaaaaaaacaaaagtcaGAATACAGAAACTTACTTTGTA
GAGCAACTTCAAGGAAATACATGGTGTATTTTCGCAAGTACATTCTGGCT
TTCTGAGGATGTGTGATTGTTTCGCCGCTGTGTTTGTCATTTTCGTCGAT
AGAATATTCCAGGTAGAAACCAATAAAATGAACTGGTGTAGGTAGAAGTA
ACCTGTTGAGAAAAATGCATAACACTTCAATGTAAAAAGACGTGTCTGGA
GAACCTTTTTATATTATAGcatcaaagtcaaaatatttgataaaaaggtA
TTTGATCATGTGACATTTTCTCTACCTCTCTGATATTATATCAAGTTAAA
ACTGTTACAACCAGTACAACGATGTGGAACATGCGTTTAGCACAAGTTAG
CAGTTAATATTTCAGAATATTTGAATACTTATTTTGTAAGCATTAACTAA
CGAAATGTGATTTCTATTAAAAGTtactattgatttgattcttaacGTAG
ATGCCTATAAGAAAGATTAACATTCTCATATTTTGCACCGTCCTCTATTA
AATTTGTAAGAACTACCTTATCGGcactttttacgccggccctaattcaA
CGCCGGtgccttttacgccggcccttattacgccacagtctaattttggg
cttacgccaattagggccgttaataacgccaaaatttggaaaaatggcta
cttatgcttcaaaaatgtcatttatttttcagtagtaaactgttaaAGAT
TCCATCgaaaatgggctattccaaCCACAGCCCCCTTGGATTTTTCCAAC
ACTACACCCCCTTTCTTCTCATCTTTTAGACTACtctggatttttttcaa
tttttagactaccctggattttacctCCTCAACATATATCTCTGCAGTCC
TACAGTCAGACCTTTTtgacctcgttttactgactaccctggatttttga
ccatattttgctGACCACCTCCTCAACATACAGACTACAcaggggtacag
actatttctggaatagcccaatcactgatttttgaatatattaaataatt
cactgaagttttaaatatggagtaaaacaatggataattttcgaCTTTGA
ATCATACTAatttcctttaaattgagaaataatgataaaaaattaacgcc
gTTTAGGTTAGGTTAAAAATGCAAAATCTTGGTCCTTTTTACGCCGATCC
TTTTAACGccagcccttattacgccacgagcccaaaaaaacgccaataag
ggccggtgtaaaaagggccgataaggtaattaccgaaaggtataccaccg
tctatcaagagttattgatttgattcttataaagtagatgcttataataa
agataaatatgctcatattgtacgccatcccttgtttactttttatttta
tttttatcttattttattttattaaaggatttacagtccaggcacactag
ggcctctaaaccggtcTATCTACATAATGATTACAAAAGTGATCTTGAAT
CGTAACGTAACGGGTGCTTTATCCATGCCTGAGTCAGTTCTTCTTTAAAT
GCTTTGATTGACTTAGCATTAACAACATTTTTTAGGAGCTGGTTCCACGC
CGGTATGCATCTAtgataaaatgattttgtttacaCACCCCTTAATCCAT
CATCTGAGAAATTAGGAATCAATTCGTAATCATGTTTACGATGGGGACGA
GTTCGgcgagaaaactttttgacgatgGTATTTTTGTCATAGAAGTGAAG
GTGTTTG
Run BLAST on NCBI

protein sequence of TCONS_00015537-protein

>TCONS_00015537-protein ID=TCONS_00015537-protein|Name=TCONS_00015537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MDEERRRERNKNAMIKSIEEINKLTKEVMFKTTEIKETIQMYQSSSPIDD
DDSPNTEADSYRPDGEDKKALNKSIAQARRRIQDTVDQIKSTREGIRVEH
IKRGELFKRLSDLKAKENEKKSHHLSTEDQYENKITVQKVKTVSGVTNYM
GNNAKRRPRKNLLSPQDI
Run BLAST on NCBI

transcript from alignment at sc0000212:141368..144557-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015537 ID=TCONS_00015537|Name=TCONS_00015537|organism=Clytia hemisphaerica|type=transcript|length=3190bp|location=Sequence derived from alignment at sc0000212:141368..144557- (Clytia hemisphaerica)
GAAGAAAGTAATCTCATCTCAAAGGGAAGGAAGCATTATACGTTTGGTTG
GCTATTTGTTGGGTGTTTCTTCTGAAAAAAGTTTTGAGTGAAAAATCGAA
ATCCAGCGAAGTTCGGTATAGACGGTAAACAAAGAATTTGTTCGATGAAC
TTTTTTAATGCTAATTTTCCAAATTTCGTTCATACTCTAAGTCGATTTAA
CTACTCGGGGTGAATAAGGAAAACTAAAGCTCGCTTTTTCCTGTATGAAA
TTGGTATGTCCATACGGCCAATAAATTGCACCTTTTCTTATAATATTTCC
TATTAGCAGATTCATGTAAAAAAGTCACACAAAAACGTCGAAAAAGCTCT
GATAGGCTGAAAATTGAACAAATAAGCATATTTCTTTCAAAATGTGCAAA
GTATGTTTCAGCCAAGCAGAGCTTTACTCGACGTTTTTTCGTGACTTTTT
TACAAAAGTCTGATAATAGGAAATATGTGTATATTACCAAGATCAAGCCT
TAAAATCTCCTTTACCACAATACAGCAGACTCTTCTAAAACAAGTTTATT
CTTTTAGAGAAAAATGGACGAGGAAAGGCGACGAGAAAGGAACAAAAATG
CCATGATCAAATCGATCGAGGAGATTAATAAACTAACAAAAGAAGTCATG
TTCAAAACAACGGAAATCAAAGAAACGATACAAATGTACCAAAGTTCATC
TCCGATTGACGATGACGACTCGCCAAATACAGAAGCGGATTCATATCGGC
CAGACGGAGAAGATAAGAAAGCTTTAAATAAATCGATCGCACAGGCTAGG
CGACGGATACAAGACACGGTCGATCAGATCAAGTCAACTCGTGAAGGAAT
CCGCGTCGAGCACATCAAAAGAGGAGAATTATTCAAGAGGTTATCAGATC
TTAAAGCGAAGGAAAACGAAAAGAAATCTCACCATTTGTCAACTGAAGAC
CAATATGAGAATAAGATCACTGTCCAAAAAGTGAAAACTGTGTCGGGAGT
GACTAATTATATGGGAAATAATGCTAAAAGACGACCACGCAAAAATCTTT
TATCACCACAAGACATTTAATGGCAAGTTTTTACTAATTCACAATTATCT
TAACTTGTATGTGTTTAACCGGACTTTCTCTAGAGCATGTCCCTTCAAGG
TTATACATAACTAACTAGAACTATCAGCTATTTAATTCCTCTTATTTTAT
GATCAATCAACGTAGAAATGCTGTGTTGAAAGTACTTTGCCCCTCCTAAG
TTATTGGAAGAAAGCAGCAAGAAACTTGTTACTTTACGGAATGATTTTTG
CAATATTTATTTTTTCGAGAGCTTGAAAAACTTTGCGCGAATTTAATTTC
GCGGGTCAGCGTAGATGGGCCCGAAAATGGGCTGAAAATGGACTCGAAAA
TGCCAATTAGCCAAAAAAATGGAGAAAAAATGTAACAATAAACTTAAAAA
AACAAAAGTCAGAATACAGAAACTTACTTTGTAGAGCAACTTCAAGGAAA
TACATGGTGTATTTTCGCAAGTACATTCTGGCTTTCTGAGGATGTGTGAT
TGTTTCGCCGCTGTGTTTGTCATTTTCGTCGATAGAATATTCCAGGTAGA
AACCAATAAAATGAACTGGTGTAGGTAGAAGTAACCTGTTGAGAAAAATG
CATAACACTTCAATGTAAAAAGACGTGTCTGGAGAACCTTTTTATATTAT
AGCATCAAAGTCAAAATATTTGATAAAAAGGTATTTGATCATGTGACATT
TTCTCTACCTCTCTGATATTATATCAAGTTAAAACTGTTACAACCAGTAC
AACGATGTGGAACATGCGTTTAGCACAAGTTAGCAGTTAATATTTCAGAA
TATTTGAATACTTATTTTGTAAGCATTAACTAACGAAATGTGATTTCTAT
TAAAAGTTACTATTGATTTGATTCTTAACGTAGATGCCTATAAGAAAGAT
TAACATTCTCATATTTTGCACCGTCCTCTATTAAATTTGTAAGAACTACC
TTATCGGCACTTTTTACGCCGGCCCTAATTCAACGCCGGTGCCTTTTACG
CCGGCCCTTATTACGCCACAGTCTAATTTTGGGCTTACGCCAATTAGGGC
CGTTAATAACGCCAAAATTTGGAAAAATGGCTACTTATGCTTCAAAAATG
TCATTTATTTTTCAGTAGTAAACTGTTAAAGATTCCATCGAAAATGGGCT
ATTCCAACCACAGCCCCCTTGGATTTTTCCAACACTACACCCCCTTTCTT
CTCATCTTTTAGACTACTCTGGATTTTTTTCAATTTTTAGACTACCCTGG
ATTTTACCTCCTCAACATATATCTCTGCAGTCCTACAGTCAGACCTTTTT
GACCTCGTTTTACTGACTACCCTGGATTTTTGACCATATTTTGCTGACCA
CCTCCTCAACATACAGACTACACAGGGGTACAGACTATTTCTGGAATAGC
CCAATCACTGATTTTTGAATATATTAAATAATTCACTGAAGTTTTAAATA
TGGAGTAAAACAATGGATAATTTTCGACTTTGAATCATACTAATTTCCTT
TAAATTGAGAAATAATGATAAAAAATTAACGCCGTTTAGGTTAGGTTAAA
AATGCAAAATCTTGGTCCTTTTTACGCCGATCCTTTTAACGCCAGCCCTT
ATTACGCCACGAGCCCAAAAAAACGCCAATAAGGGCCGGTGTAAAAAGGG
CCGATAAGGTAATTACCGAAAGGTATACCACCGTCTATCAAGAGTTATTG
ATTTGATTCTTATAAAGTAGATGCTTATAATAAAGATAAATATGCTCATA
TTGTACGCCATCCCTTGTTTACTTTTTATTTTATTTTTATCTTATTTTAT
TTTATTAAAGGATTTACAGTCCAGGCACACTAGGGCCTCTAAACCGGTCT
ATCTACATAATGATTACAAAAGTGATCTTGAATCGTAACGTAACGGGTGC
TTTATCCATGCCTGAGTCAGTTCTTCTTTAAATGCTTTGATTGACTTAGC
ATTAACAACATTTTTTAGGAGCTGGTTCCACGCCGGTATGCATCTATGAT
AAAATGATTTTGTTTACACACCCCTTAATCCATCATCTGAGAAATTAGGA
ATCAATTCGTAATCATGTTTACGATGGGGACGAGTTCGGCGAGAAAACTT
TTTGACGATGGTATTTTTGTCATAGAAGTGAAGGTGTTTG

Coding sequence (CDS) from alignment at sc0000212:141368..144557-

>TCONS_00015537 ID=TCONS_00015537|Name=TCONS_00015537|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0000212:141368..144557- (Clytia hemisphaerica)
ATGGACGAGGAAAGGCGACGAGAAAGGAACAAAAATGCCATGATCAAATC
GATCGAGGAGATTAATAAACTAACAAAAGAAGTCATGTTCAAAACAACGG
AAATCAAAGAAACGATACAAATGTACCAAAGTTCATCTCCGATTGACGAT
GACGACTCGCCAAATACAGAAGCGGATTCATATCGGCCAGACGGAGAAGA
TAAGAAAGCTTTAAATAAATCGATCGCACAGGCTAGGCGACGGATACAAG
ACACGGTCGATCAGATCAAGTCAACTCGTGAAGGAATCCGCGTCGAGCAC
ATCAAAAGAGGAGAATTATTCAAGAGGTTATCAGATCTTAAAGCGAAGGA
AAACGAAAAGAAATCTCACCATTTGTCAACTGAAGACCAATATGAGAATA
AGATCACTGTCCAAAAAGTGAAAACTGTGTCGGGAGTGACTAATTATATG
GGAAATAATGCTAAAAGACGACCACGCAAAAATCTTTTATCACCACAAGA
CATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008667XLOC_008667Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015537-proteinTCONS_00015537-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015537-exon-sc0000212-1575043694:144434..144557TCONS_00015537-exon-sc0000212-1575043694:144434..144557Clytia hemisphaericaexon
TCONS_00015537-exon-sc0000212-1575043694:141368..144000TCONS_00015537-exon-sc0000212-1575043694:141368..144000Clytia hemisphaericaexon
TCONS_00015537-exon-sc0000212-1510915933:144434..144557TCONS_00015537-exon-sc0000212-1510915933:144434..144557Clytia hemisphaericaexon
TCONS_00015537-exon-sc0000212-1510915933:141368..144000TCONS_00015537-exon-sc0000212-1510915933:141368..144000Clytia hemisphaericaexon
TCONS_00015537-exon-sc0000212-1491911889:144434..144557TCONS_00015537-exon-sc0000212-1491911889:144434..144557Clytia hemisphaericaexon
TCONS_00015537-exon-sc0000212-1491911889:141368..144000TCONS_00015537-exon-sc0000212-1491911889:141368..144000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:141368..144557 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.527727	0.527701	0.962744	1.41609	3.68737	1.93186	17.9229	20.2841	15.2098	14.2967	10.3271	14.0165	0.560115	0.396151	0.441158	0.346041	0.238386	0.376586	0.860943	0.634059	0.641127	0.598133	0.194843	0.426248	0.641929	1.09561	0.729739	0.73681	0.600689	0.500614
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top