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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015535 ID=TCONS_00015535|Name=TCONS_00015535|organism=Clytia hemisphaerica|type=transcript|length=2208bp
CTCCTTTAAAAGCAAAAATGACATAATCAAAGAAATTGTGCATATTAATA
TATTAAATCTTTCAGGAAACAGAACACAAAATTAGAATGTGTTCGTAGCT
TTAGCGAAGAAGCAATTATAAAACACAAACTTGTTACCCCAAGAGAATCG
ACAAACTATGTTATGATTTCAACAATGATAGCAAGACTACTAATGTTAGC
GGAACTCTCTAGGGAGTCTTGTTGTGATGTAACAGTAATTGTCTATGGAA
AATATCATTGCAAACTAATGGTAATCTGATTGAAAAAAATGCAGAAAATG
TCATATCTAGATCAATTTTTGGGTGTGTTAGAAGTTTATTtcgaaatctg
caacaattaaacaaaagtggtctcttTTACTTATTGCTTCCCGGCActcc
tttgcagctgtttatcaaatttccaccaatgaggttgctgcGTTTCAATC
GGCTCTTCTTTCTGGCACCCGTggcccacccttcatatatttgtttcaat
ttgtggcttaggttttttctcatttcaatttactgaagaattTGATggga
gagttagattgtcaacaaagtgccataaaaaatcattgaataaaagaaaa
acttagtctttaaatattttcattttgaaaaataggtgcaaaaaagtgaa
acatagaaaaaattcatttttcattgcatttaaaacgaaatgggggattt
ggaaaattttctatgtttagttttttgcacaaacccctgtaactatgagc
gagcaccccgttgctaagatgttggcttgaaatcaaaagtgaaaccactc
aaaacgaaagtaaaattagcccatactcgaaatcccgtaatcttgatata
ctagtttaagtctatactgtaaTTCTGATTCAATATTTTAAATATAAGAT
AATGTGATAATATTAATATGATAGTCTCCCTTATAAAAGCTAATGACCCA
CTCTCCTTCTTGTTGTTGCTCCTTTATTTATACTGTACTATAAGCGTcaa
atttgacattttcaactttaattgttttctatttatagATGGACAATCAG
TGACTTCTTTTCCCATACTGATATTGCTTCTTTTATCATAGCAGGATTTA
TACAAGCAAAACTCATCAAAATGGCTTCTAGGTGGCGAACATGGGATTTA
CATTTTGCAACAGACATTTTGGGAAATAAGTTGCCTTTTGATTCTCTGGA
TAGTATACCTGTTGGTTCAAGAGGGAAATTTCGCTTCAATATACAACCTA
CTATGTTGAAGATACCTCTTCTTCAAGATTTTGGAAAGTTAGATGGTAAA
GTTGGGGGTAGAGGGAAACGACTTTGTGAGCAGAATGAATCAAAAGATGA
CAAATTGAATAAAGTAAACAAGACAAGTCTCGTGGATAATGCTGTTTATC
GTAAAGAGATGCGTCAACAATGGCatgaaaaagaatttccatCTTTATCA
GAGACACATACACAATCAAATGATGATAAATCTActcaagaaaaagtcaa
aaatacaaagaatgtaAATCAACAGTTTGAAGATGCAGAAATAAGCAAAA
CAATTCAAGACTTTTCTAATCAAATCTTTATAAATGAAGATATTTTTTCA
GATCCAAGTGTGAAAGCAGAAAACACTTCAGATCAAAACACTACTAAAGA
ACAAAATGTCCCTGATGAATGGGAGGAAAATCTACCAGCTCAAAGTGATA
CAGATATAAAAGATACTCAAGATGCTGAAAAATCCTTAAACGATTCAGAA
AAGGAAAGTTCGTTCACCAGCGCCCTAAAAGGTGAAGAAGATAAAAGTTT
TACAGACAATGATTTTTTGCAGTCTCTTGATGAACCAGAATATTACATTC
TCATTGAAGGATTAACAAAGGAGGTTGATgaggaaaattttaaagaactc
ATCTCTTCATTTGGAGAAATTGAACTGTTCCTGGCTCAAGTATGCTCAGA
TGAAACACACTTAAATGTTATTGTGAAGATGGTGGATAGTTCCCATTGTG
ATTGGGTTATTTCATGTCTCGATGGTGACATTTATGAAGATGGTGGAGAA
CGCTTATCTGCAAAAGCTGTTGTGGATATGGTATAGAGATATACCgcact
ttttgtaaatattgctcttgattttttattttgttacttTTGTTGCTAAG
AAACTTGAAAAAATACAAGctctttgttttttatatcTGATTTCACTTAT
AAAACAAC Run BLAST on NCBI transcript from alignment at sc0000212:39225..41432- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015535 ID=TCONS_00015535|Name=TCONS_00015535|organism=Clytia hemisphaerica|type=transcript|length=2208bp|location=Sequence derived from alignment at sc0000212:39225..41432- (Clytia hemisphaerica)
CTCCTTTAAAAGCAAAAATGACATAATCAAAGAAATTGTGCATATTAATA
TATTAAATCTTTCAGGAAACAGAACACAAAATTAGAATGTGTTCGTAGCT
TTAGCGAAGAAGCAATTATAAAACACAAACTTGTTACCCCAAGAGAATCG
ACAAACTATGTTATGATTTCAACAATGATAGCAAGACTACTAATGTTAGC
GGAACTCTCTAGGGAGTCTTGTTGTGATGTAACAGTAATTGTCTATGGAA
AATATCATTGCAAACTAATGGTAATCTGATTGAAAAAAATGCAGAAAATG
TCATATCTAGATCAATTTTTGGGTGTGTTAGAAGTTTATTTCGAAATCTG
CAACAATTAAACAAAAGTGGTCTCTTTTACTTATTGCTTCCCGGCACTCC
TTTGCAGCTGTTTATCAAATTTCCACCAATGAGGTTGCTGCGTTTCAATC
GGCTCTTCTTTCTGGCACCCGTGGCCCACCCTTCATATATTTGTTTCAAT
TTGTGGCTTAGGTTTTTTCTCATTTCAATTTACTGAAGAATTTGATGGGA
GAGTTAGATTGTCAACAAAGTGCCATAAAAAATCATTGAATAAAAGAAAA
ACTTAGTCTTTAAATATTTTCATTTTGAAAAATAGGTGCAAAAAAGTGAA
ACATAGAAAAAATTCATTTTTCATTGCATTTAAAACGAAATGGGGGATTT
GGAAAATTTTCTATGTTTAGTTTTTTGCACAAACCCCTGTAACTATGAGC
GAGCACCCCGTTGCTAAGATGTTGGCTTGAAATCAAAAGTGAAACCACTC
AAAACGAAAGTAAAATTAGCCCATACTCGAAATCCCGTAATCTTGATATA
CTAGTTTAAGTCTATACTGTAATTCTGATTCAATATTTTAAATATAAGAT
AATGTGATAATATTAATATGATAGTCTCCCTTATAAAAGCTAATGACCCA
CTCTCCTTCTTGTTGTTGCTCCTTTATTTATACTGTACTATAAGCGTCAA
ATTTGACATTTTCAACTTTAATTGTTTTCTATTTATAGATGGACAATCAG
TGACTTCTTTTCCCATACTGATATTGCTTCTTTTATCATAGCAGGATTTA
TACAAGCAAAACTCATCAAAATGGCTTCTAGGTGGCGAACATGGGATTTA
CATTTTGCAACAGACATTTTGGGAAATAAGTTGCCTTTTGATTCTCTGGA
TAGTATACCTGTTGGTTCAAGAGGGAAATTTCGCTTCAATATACAACCTA
CTATGTTGAAGATACCTCTTCTTCAAGATTTTGGAAAGTTAGATGGTAAA
GTTGGGGGTAGAGGGAAACGACTTTGTGAGCAGAATGAATCAAAAGATGA
CAAATTGAATAAAGTAAACAAGACAAGTCTCGTGGATAATGCTGTTTATC
GTAAAGAGATGCGTCAACAATGGCATGAAAAAGAATTTCCATCTTTATCA
GAGACACATACACAATCAAATGATGATAAATCTACTCAAGAAAAAGTCAA
AAATACAAAGAATGTAAATCAACAGTTTGAAGATGCAGAAATAAGCAAAA
CAATTCAAGACTTTTCTAATCAAATCTTTATAAATGAAGATATTTTTTCA
GATCCAAGTGTGAAAGCAGAAAACACTTCAGATCAAAACACTACTAAAGA
ACAAAATGTCCCTGATGAATGGGAGGAAAATCTACCAGCTCAAAGTGATA
CAGATATAAAAGATACTCAAGATGCTGAAAAATCCTTAAACGATTCAGAA
AAGGAAAGTTCGTTCACCAGCGCCCTAAAAGGTGAAGAAGATAAAAGTTT
TACAGACAATGATTTTTTGCAGTCTCTTGATGAACCAGAATATTACATTC
TCATTGAAGGATTAACAAAGGAGGTTGATGAGGAAAATTTTAAAGAACTC
ATCTCTTCATTTGGAGAAATTGAACTGTTCCTGGCTCAAGTATGCTCAGA
TGAAACACACTTAAATGTTATTGTGAAGATGGTGGATAGTTCCCATTGTG
ATTGGGTTATTTCATGTCTCGATGGTGACATTTATGAAGATGGTGGAGAA
CGCTTATCTGCAAAAGCTGTTGTGGATATGGTATAGAGATATACCGCACT
TTTTGTAAATATTGCTCTTGATTTTTTATTTTGTTACTTTTGTTGCTAAG
AAACTTGAAAAAATACAAGCTCTTTGTTTTTTATATCTGATTTCACTTAT
AAAACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015535-exon-sc0000212-1575043694:39225..41432 | TCONS_00015535-exon-sc0000212-1575043694:39225..41432 | Clytia hemisphaerica | exon |
| TCONS_00015535-exon-sc0000212-1510915933:39225..41432 | TCONS_00015535-exon-sc0000212-1510915933:39225..41432 | Clytia hemisphaerica | exon |
| TCONS_00015535-exon-sc0000212-1491911889:39225..41432 | TCONS_00015535-exon-sc0000212-1491911889:39225..41432 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:39225..41432 - |
Blast
The following BLAST results are available for this feature:
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