TCONS_00015530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015530
Unique NameTCONS_00015530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015530 ID=TCONS_00015530|Name=TCONS_00015530|organism=Clytia hemisphaerica|type=transcript|length=523bp
AATTGATGTAGCTGCAAGATCCATTTTCCCTGATGATTTATAAGGACGGG
GAGGTAATTGGTATCAATTGCATTACAGTTCAACAAGCTGCTGGTATCTC
ATTTGCAATTCCTTCAGATATTGTTGCTGAATTCCTTGATGGTGCCGTCA
AGAGGGAGaaagattttgtcaagaatGGAGGATTTTTCAGGAAAGCAAAA
CGGAATGAGAAGTTTTATATTGGAATTACGATGCTGACACTTTCACCAGA
AATTATTGAAGAGCTAAAGCGAAGAAACCCCAACTTCTTTGAAAATGTGG
AAGGTGGTGTTTTGGTCACTAAAGTTAATCGTGGATCTCCTTCAGAACGC
TGTGGATTGGTTGGTGGTGATGTCATTTTATCTATCAATAACAAATCTGT
GTCTTCGACAAGAGATGTGTACACAGAGGTGCGCAAAGGGTGTTGATATC
AAcacaaatcaaaaaatgaaaagaaaatgtaaCTTGGAGTACTAATTCTC
GTTTGACTTGACCTGTGTCAAGG
Run BLAST on NCBI

transcript from alignment at sc0000212:34618..37857-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015530 ID=TCONS_00015530|Name=TCONS_00015530|organism=Clytia hemisphaerica|type=transcript|length=3240bp|location=Sequence derived from alignment at sc0000212:34618..37857- (Clytia hemisphaerica)
AATTGATGTAGCTGCAAGATCCATTTTCCCTGATGATTTATAAGGTAACT
TGACTCTAAATTTTGCTAAAAATGAGATTCCAAATATGTATGTCATTTGA
AACTTTGTACTTTGAATTGTAACAGACTATGAATGAAGCAAATTTTAACC
TTTTCAACCTTTTTTTGTATTCCTTCAGGACGGGGAGGTAATTGGTATCA
ATTGCATTACAGTTCAACAAGCTGCTGGTATCTCATTTGCAATTCCTTCA
GATATTGTTGCTGAATTCCTTGATGGTGCCGTCAAGAGGGAGAAAGATTT
TGTCAAGAATGGAGGATTTTTCAGGAAAGCAAAACGGAATGAGAAGTTTT
ATATTGGTATGTTATTACACATAATCTTTTTAACTTATTCAAATCAAAAC
CCTATGATTCGATTGAATTGAGTTGGTATCAAAATACCGGGTGTGCCACA
AAAAAGTTTCTCTCTTTAAAACTAACTTTTTCAAAATCTAAAAGTTTTAA
ACAGACTAATCTTATAAAATTAGAAAGAAGAAAGATAAACTTAAATTTTG
ATGGGTCGTTTATTAAATTTGATTCATTAGATCAAAAGTTATGCTCAATT
GAATGAAAAAGTTACTTTCAGAAAGTGCTCGAAAACGTTGAAAATCGACA
TATCAAATTTTTGGACCTACCTCCGGGTACCCCGGTGGAGGTCCTATGAA
TTAACCGTTGTCTGTTCAACCGTCCGTCCGTTCGACTGCTACCAGCTCTT
CTCGAGATTGGGTCATTAGTTCTTTCTGATTTTTAGCACAAAGATGCAAA
ATGGCAATGGCTAAAATGTGACGGAGCCCGGTTTTTGAAAAAAAAAATTT
TGCCAGAAAAACTGGTTTTTTGGCATTTTCTCGTGATTTTATCATTAGTT
TTTTCTGATTTTTTGCTCAAAGATGTGTATTAACAATGCCCAAAACATGG
TTGAGTCCGATTTTTGAAAAAAAAAATTTTCCGGCCGAACATGCCGGAAA
TCGCCGTTTTTCTAGATTTTCATTGGACTTTTTCCTCGTAATTGGTTGTT
TTTTCATTGAAAAACATTATTAATACCAATGCCCACCAATAAGCATGTTT
CAATTTTCAATAAAATTGCTGGAACTATTTAAAAATTGCCGGAACAACCT
ATTTTCGCCGGAAAGACAGTATTTCTTGAATTTCTCGAGTTGTACTTTAT
ATTTTTTTTATGAAAATTTGCACACTGATGCAAATTGACAATACCTAAAA
TGTGACGGAGCCTGATTTTCGAAAAACATTTTTTCCTGCCGAAAATGCCA
GAAATATGCCGGAAAAACCGGTTTTTTTGACATTTTCTCAAATTTTCATC
TTTACTTTTTTCTGATTTTTTGCAGAGAGATGCATATTCGCAATGCTTAA
AACATGGCCAAGTTTGATTTTTGAGAAAAAGTTTTTTCTGGTGGATAATG
CCGGAATTCATTGTTTTTGCAGATTTTCATTGGATTTTTTCCTTATTATT
TCTATGTTTTTCACACAAAAACATTATTGATAACAATGCTCACCATCAAG
CATGATTCAATTGTCAATAAAACTGATTTTTGCGACCAGAACTTTCTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGTT
ATGCATTTTCGCTAAACGCTATATTTTCTGACTGATTTTTTTCATTTTTC
TCCTCGCATTGCTATCTAACTTTCATCACCAGGTAGGTCCATTCGGCATC
TAGCTTGTTATCTTAAAATTTGCAATTGCAATAGCCTTTACATGCTCTTC
GACGAATTTTCTTCCTTTTATTAAAATTCAACCTTCCTTTATATAAAAAA
GGTCATTTAGACAGTTAATTATCATTTTTAATGACCGAAACAAAAAAATT
GATGCATCATGTAATTATGCTTCTGTTTAATTTGATAGGTCGATTTTTAA
CGTTTTTGAGCGCTTTCAGAAGTTAACTTTTTGATTCAATTGAGCATAAT
TTTTTGATCTAATGAATCGAATTTAATAAATGACCCATCAAAATTTAAGT
CTATCTTTCTTCTTTACAATGAAATAAGAATGCTTCTTTTAGAATTTTCA
GATTTCGAGAAAATTAGTTTTAAAGACAGAAACTTTTTTGTGGCTCACCT
GGTATATAATTAAATAATTTATAAGTCATTTCGTCTGGACCATCCTCTGC
CCTGACTACATGGGCATTAGTAATTTTTGATAACATGAAGTAAATTATTG
GAAATGCATCATTTGTTCAAATAATTCCCACCTCCTACATACAACATTTG
ATAAGGATAAAAAATTTCATCAATCCTTTCTTTTGCCACAGGAATTACGA
TGCTGACACTTTCACCAGAAATTATTGAAGAGCTAAAGCGAAGAAACCCC
AACTTCTTTGAAAATGTGGAAGGTGGTGTTTTGGTCACTAAAGTTAATCG
TGGATCTCCTTCAGAACGGTATTGAATCTGTCTTTCCTCACGTCAAAACA
AACAAAAGGATTACCCCAAACTTTAGTTTTCCTGACTTTATTATTTGATT
TGTTCGAATTAAAATGATCGAACATGGTCAATATTTTCTGTGCCTGTTTT
TCTTCTGTATGATTAATTAATGATAATTTAGCTTTCAACTCATCTTTTAA
GCTGTGGATTGGTTGGTGGTGATGTCATTTTATCTATCAATAACAAATCT
GTGTCTTCGACAAGAGATGTGTACACAGAGGTGCGCAAAGGTGATACCAT
GATTATGAAAGTCAAACGCGGTGAAAACATTGTTACATTGAATGTTGAGC
CTGAAATCACAAGTAGACTATGATGTCAATTTGATTAGCCTGGATAACCT
AGGTTTGTTGGATTACATCCTTAATATAGGCTACTCTCAAAAGTGAAATG
ATACCTTGTTCAGTTGCCTAAAGGATGCAAGGCAAGTACATTAATTGTTA
TTTTTCTAAATTGTACATAGAAGATATATAATTTTTTTTAATCTATATTT
TACAGGGTGTTGATATCAACACAAATCAAAAAATGAAAAGAAAATGTAAC
TTGGAGTACTAATTCTCGTTTGACTTGACCTGTGTCAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008665XLOC_008665Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015530-exon-sc0000212-1575043694:37814..37857TCONS_00015530-exon-sc0000212-1575043694:37814..37857Clytia hemisphaericaexon
TCONS_00015530-exon-sc0000212-1575043694:37502..37679TCONS_00015530-exon-sc0000212-1575043694:37502..37679Clytia hemisphaericaexon
TCONS_00015530-exon-sc0000212-1575043694:35240..35366TCONS_00015530-exon-sc0000212-1575043694:35240..35366Clytia hemisphaericaexon
TCONS_00015530-exon-sc0000212-1575043694:34968..35056TCONS_00015530-exon-sc0000212-1575043694:34968..35056Clytia hemisphaericaexon
TCONS_00015530-exon-sc0000212-1575043694:34618..34702TCONS_00015530-exon-sc0000212-1575043694:34618..34702Clytia hemisphaericaexon
TCONS_00015530-exon-sc0000212-1510915933:37814..37857TCONS_00015530-exon-sc0000212-1510915933:37814..37857Clytia hemisphaericaexon
TCONS_00015530-exon-sc0000212-1510915933:37502..37679TCONS_00015530-exon-sc0000212-1510915933:37502..37679Clytia hemisphaericaexon
TCONS_00015530-exon-sc0000212-1510915933:35240..35366TCONS_00015530-exon-sc0000212-1510915933:35240..35366Clytia hemisphaericaexon
TCONS_00015530-exon-sc0000212-1510915933:34968..35056TCONS_00015530-exon-sc0000212-1510915933:34968..35056Clytia hemisphaericaexon
TCONS_00015530-exon-sc0000212-1510915933:34618..34702TCONS_00015530-exon-sc0000212-1510915933:34618..34702Clytia hemisphaericaexon
TCONS_00015530-exon-sc0000212-1491911889:37814..37857TCONS_00015530-exon-sc0000212-1491911889:37814..37857Clytia hemisphaericaexon
TCONS_00015530-exon-sc0000212-1491911889:37502..37679TCONS_00015530-exon-sc0000212-1491911889:37502..37679Clytia hemisphaericaexon
TCONS_00015530-exon-sc0000212-1491911889:35240..35366TCONS_00015530-exon-sc0000212-1491911889:35240..35366Clytia hemisphaericaexon
TCONS_00015530-exon-sc0000212-1491911889:34968..35056TCONS_00015530-exon-sc0000212-1491911889:34968..35056Clytia hemisphaericaexon
TCONS_00015530-exon-sc0000212-1491911889:34618..34702TCONS_00015530-exon-sc0000212-1491911889:34618..34702Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:34618..37857 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.94591	0	0	0.218232	0	0.9556	0	0	2.00956	1.57595	0	3.13154	3.72266	5.12082	4.85431	5.56816	8.04662	7.12752	4.75277	9.19739	6.13674	6.44739	7.38497	4.49526	2.82069	2.01108	7.49168	5.12922	8.1594	4.96562
Blast
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BLAST of TCONS_00015530 vs. Swiss-Prot (Human)
Match: HTRA2 (Serine protease HTRA2, mitochondrial OS=Homo sapiens GN=HTRA2 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.737e-27
Identity = 62/134 (46.27%), Postives = 83/134 (61.94%), Query Frame = 3 
Query:   33 MIYKDGEVIGINCITVQQAAGISFAIPSDIVAEFLDGAVKREKDFVKNGGFFRKAKRNEKFYIGITMLTLSPEIIEELKRRNPNFFENVEGGVLVTKVNRGSPSERCGLVGGDVILSINNKSVSSTRDVYTEVR 434
            ++  DGEVIG+N + V   AGISFAIPSD + EFL    K+      +G        +++ YIG+ MLTLSP I+ EL+ R P+F  +V+ GVL+ KV  GSP+ R GL  GDVIL+I  + V +  DVY  VR
Sbjct:  310 LVNLDGEVIGVNTMKV--TAGISFAIPSDRLREFLHRGEKKNSSSGISG--------SQRRYIGVMMLTLSPSILAELQLREPSF-PDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVR 432
The following BLAST results are available for this feature:
BLAST of TCONS_00015530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HTRA23.737e-2746.27Serine protease HTRA2, mitochondrial OS=Homo sapie... [more]
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