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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015526 ID=TCONS_00015526|Name=TCONS_00015526|organism=Clytia hemisphaerica|type=transcript|length=1891bp
tttgaaaagtCTAATACAACAGAAATGTAACATGTAATATGTAACGAAGC
GCTTATGTCATTCAAAAAAGATGGAAGTTTTAACTATTCAgaggattttt
tttgttttgtgttttcaAGTTCAGTTTTtaactaaaaatttagaaattaA
ATCACAACTTGAAGAATTTCGACGAGCTCAAAAACGTGAAGAAACTCTAA
AAGAAAAGATCACAACACTTGTTTCCAAAATCAAACAAGATTCACAATCA
AACTTCATGGTGCGTATTTTGGGAGAAATATTATTAACTGGAAGCCTCAA
TCAAGGAACATTTATCGCATCattgtttaaagaaaatttgaaatacaaaG
GTTCGCTTATCAACAGAGATATTGATATTGATTGCAAAGCAATTGCAATT
GATTTGAGGCTGAACCAAAACTGTCTGAAAGATATCAATGGAAAACCAGG
ATATGTAGAGTTATTGACCAATTGTATACCGGAAGAAGAAGTTTGGTATC
GTTATTTCGAAAAGGAAACCAAATATCTTCAACCAGTTCTGTTCAAAAAC
AAAGTTTCGAATAGTTTTAATGGACCGTCATCAAACGCCAAGGAAAGAGT
TTCGATTGTCTTCCTTCACTATCATTTCTTAAAACGAGGAATCATATTCA
AAAGTATAAATGTAAAGGTTTCCGGGAAAACAAGCAAAGCTACTGTGaaa
catatttttgaaatccAGAAAGATGAGAAACtttacatgaatttcgaaat
tgaTTATGCttttatgtttaaaatattctttaggCCAAATATTAtgtcaa
attttctcaaaagaaCAAGGTACAACTTGAGTGAAGAAATAATACAATAT
ATCTATGTTCTAGCTAAAACATCACGCGAGCAAAAACACAACATCAATAC
AACAGAATGGACTTATTCTTTCTCTCATATCGAGAATTTTATATTGAACT
CATTTTCTGACACACAAAAACTTGTTTACGTGATTTTCAAATCGATATTC
AACAAATCGCTAAAGCATTTAGATGAAGACAAATTAACTTCATACATCGT
CAAAACTATCATTTTATGGAGATTTGAAGACATCGAATTGGACGACTCGG
ACGATTGGCTAAATGACACGAGGATTTGGGAAACGGCtgacattttattc
aaagatttaATCGTTTCATTTGATAGAGGCTTTCTAAAACATTATTTTAT
TCCAGAGGTCAATGTTCTTCAGAGATTAGACACAGATTTGAGGGACAGCT
GTCGCAGGCGAATTAAAGAAATCGGAAAAGATCTGAAAAAAGTATTGCTT
ACAAACGAGGTAGCTGAAGCAAGAAATTTTCTAGAAGAAGTGATGCACCT
ACTTCATGATCGAGAACATATCTTACAACTGGAAAAGTTAAAAAGTAGTA
TGTTAAAGCATTAACTTAATTTAAATAACATAATTTGTCAAAACTTTaaa
cattgttttcaaataattGTGAGTTTGCAATCACAATTCAACATTGGCAG
TTGGATCAACCGTTAATTAACTAAGTATGAACctataatgttttttttca
tttaatagCATCTCAAGATCCCATATcgataaatttttatttcattttag
ttAAAGAAGGGTTTAGATTACAAGGACTATTTTTCAAGACTATTGAGtat
atgtatgtgtgtttttctgtgacggagacggtaaggttctaatttgacta
gatcatgaccaactgaggacgacggtaaatcagcacttttaccgtccttg
attttgcgggtcagaagtgcagattattccaaatcgcttcagtcactcta
ccgtacTCAAAagagcaaatacataaactcgctattgttaAAGCTACACC
AGCGTACTACAACCAGTTTATTTAAATTTCCAGTTGTCGAA Run BLAST on NCBI transcript from alignment at sc0000212:408578..410827+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015526 ID=TCONS_00015526|Name=TCONS_00015526|organism=Clytia hemisphaerica|type=transcript|length=2250bp|location=Sequence derived from alignment at sc0000212:408578..410827+ (Clytia hemisphaerica)
tttgaaaagtCTAATACAACAGAAATGTAACATGTAATATGTAACGAAGC
GCTTATGTCATTCAAAAAAGATGGAAGTTTTAACTATTCAgaggattttt
tttgttttgtgttttcaAGTTCAGTTTTtaactaaaaatttagaaattag
taagtatttttaaatattcaatCAAATTTGACTGCATCCTTCCGATCTTT
CGTTATTCCCTATCCTAGTCTGTATTTGTAAATGGAACGTGGCTTGATCG
TGAAAGAATTTTTACAACGTCGTCAATTCGTATAAATTAGTATTGGTACT
ACTATAAATTCTAGCAtaattcaaatcaaataaaaatggtagaggGTTTT
GTCGACTTTTTGTATCAATCTCGCATTTTTATGTAACAAAAGGAAAACAT
TATACTATTTTTAGTCATTCCATGTGTATCTTaggaaaatataaataaaa
aagctgGTTTTCAAGGAGAACTAGCAAGTTTTAGTTTACACTTTGGCTTT
TTATTTAGAATCACAACTTGAAGAATTTCGACGAGCTCAAAAACGTGAAG
AAACTCTAAAAGAAAAGATCACAACACTTGTTTCCAAAATCAAACAAGAT
TCACAATCAAACTTCATGGTGCGTATTTTGGGAGAAATATTATTAACTGG
AAGCCTCAATCAAGGAACATTTATCGCATCattgtttaaagaaaatttga
aatacaaaGGTTCGCTTATCAACAGAGATATTGATATTGATTGCAAAGCA
ATTGCAATTGATTTGAGGCTGAACCAAAACTGTCTGAAAGATATCAATGG
AAAACCAGGATATGTAGAGTTATTGACCAATTGTATACCGGAAGAAGAAG
TTTGGTATCGTTATTTCGAAAAGGAAACCAAATATCTTCAACCAGTTCTG
TTCAAAAACAAAGTTTCGAATAGTTTTAATGGACCGTCATCAAACGCCAA
GGAAAGAGTTTCGATTGTCTTCCTTCACTATCATTTCTTAAAACGAGGAA
TCATATTCAAAAGTATAAATGTAAAGGTTTCCGGGAAAACAAGCAAAGCT
ACTGTGaaacatatttttgaaatccAGAAAGATGAGAAACtttacatgaa
tttcgaaattgaTTATGCttttatgtttaaaatattctttaggCCAAATA
TTAtgtcaaattttctcaaaagaaCAAGGTACAACTTGAGTGAAGAAATA
ATACAATATATCTATGTTCTAGCTAAAACATCACGCGAGCAAAAACACAA
CATCAATACAACAGAATGGACTTATTCTTTCTCTCATATCGAGAATTTTA
TATTGAACTCATTTTCTGACACACAAAAACTTGTTTACGTGATTTTCAAA
TCGATATTCAACAAATCGCTAAAGCATTTAGATGAAGACAAATTAACTTC
ATACATCGTCAAAACTATCATTTTATGGAGATTTGAAGACATCGAATTGG
ACGACTCGGACGATTGGCTAAATGACACGAGGATTTGGGAAACGGCtgac
attttattcaaagatttaATCGTTTCATTTGATAGAGGCTTTCTAAAACA
TTATTTTATTCCAGAGGTCAATGTTCTTCAGAGATTAGACACAGATTTGA
GGGACAGCTGTCGCAGGCGAATTAAAGAAATCGGAAAAGATCTGAAAAAA
GTATTGCTTACAAACGAGGTAGCTGAAGCAAGAAATTTTCTAGAAGAAGT
GATGCACCTACTTCATGATCGAGAACATATCTTACAACTGGAAAAGTTAA
AAAGTAGTATGTTAAAGCATTAACTTAATTTAAATAACATAATTTGTCAA
AACTTTaaacattgttttcaaataattGTGAGTTTGCAATCACAATTCAA
CATTGGCAGTTGGATCAACCGTTAATTAACTAAGTATGAACctataatgt
tttttttcatttaatagCATCTCAAGATCCCATATcgataaatttttatt
tcattttagttAAAGAAGGGTTTAGATTACAAGGACTATTTTTCAAGACT
ATTGAGtatatgtatgtgtgtttttctgtgacggagacggtaaggttcta
atttgactagatcatgaccaactgaggacgacggtaaatcagcactttta
ccgtccttgattttgcgggtcagaagtgcagattattccaaatcgcttca
gtcactctaccgtacTCAAAagagcaaatacataaactcgctattgttaA
AGCTACACCAGCGTACTACAACCAGTTTATTTAAATTTCCAGTTGTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015526-exon-sc0000212-1491911889:408578..408726 | TCONS_00015526-exon-sc0000212-1491911889:408578..408726 | Clytia hemisphaerica | exon |
| TCONS_00015526-exon-sc0000212-1510915933:408578..408726 | TCONS_00015526-exon-sc0000212-1510915933:408578..408726 | Clytia hemisphaerica | exon |
| TCONS_00015526-exon-sc0000212-1575043694:408578..408726 | TCONS_00015526-exon-sc0000212-1575043694:408578..408726 | Clytia hemisphaerica | exon |
| TCONS_00015526-exon-sc0000212-1491911889:409086..410827 | TCONS_00015526-exon-sc0000212-1491911889:409086..410827 | Clytia hemisphaerica | exon |
| TCONS_00015526-exon-sc0000212-1510915933:409086..410827 | TCONS_00015526-exon-sc0000212-1510915933:409086..410827 | Clytia hemisphaerica | exon |
| TCONS_00015526-exon-sc0000212-1575043694:409086..410827 | TCONS_00015526-exon-sc0000212-1575043694:409086..410827 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:408578..410827 + |
Blast
The following BLAST results are available for this feature:
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