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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015519 ID=TCONS_00015519|Name=TCONS_00015519|organism=Clytia hemisphaerica|type=transcript|length=1841bp CACGCCTTTCGcaagtttaaaatatttttggaaattttgtatATCAATCC TGATAAATCTAATATTCTTCGATTGATTCATCCATTTTCGAATCGTGGTA TCATTAGAGAAGATGGAAAAGATTGGAATTGTCATACCTTCAGAGGTTCT CGCAAAAAAAGAACTTCGAGCCCAAGTTGAGAAGCCGCGAACCATTACCA AACAACGTCGGGTAGCATCCAACCCAAACATCAAAACGGAGCAACATATT GAAAGCTTAGAAAAAGCCTTCAGTCAAGAAACCTTCAAAGCTGATCAGAG AAAGCAGGCATCCTCCGAATGCTTACTtattgaaaaagaattgaaaaaaa ttctacagAAAATGAGAAGTGACAATGAGCTGTCAACTGCTGCggctcaa aaagaaaaacaatccaCACAACAGAACATTTCTACAAGCTCATCAAACTC AATGCAAGATAGCCCTTCCGTCTCTGTTGGTGATCAGCCTTTGAAGAACA GGCGAAAACATTCGAAGCACACCTTCTCGAAGACCTTACCGCTCTGCCCC GACTCAAACAAAGATACGAAAGAGAAACGGGAAAAGAAATCGACTTCCTG TAAGGTAAAGAATAAACCAATCAAAGCTGGAGGAAACATTCAATCCAGAA TACAGTTCTTCGAACAAAATAAAAACCTGAAGCAAAGTTCAGCTCTGGAT GAGAATGTACCTGCAACTAAGGGTAACGTTTTGAAAGAAACTGCATCTAA CTCGTTAAATCAAGTTAATTTTGGTGAGTTTCCAACGTTGCCGGAGAGAA CGAAAGTCGGAATGGTGAATGAAGAGCTCAACAAAAGCAAGCCTAGCTTT TCATCTATGGCTAAGAAGCCACCAGTGGTCAAACCACGCCCAGCTACCAA GCCTGTCACTTCAGGGTCGAAGAATGTGACAAAGAAGTCAGCTAAAAGTG CATCAAGCGAAAAGGTCAAGGTTCAATCACCTGAATCATTCACAAAAGGG ACTTCAAACGCATCTAAGAACCTCGCAGGTGGAACAAAAAGCTTCACCAA AAAGAAGTCTGGGGAAGGATTGAAGAAACCAACAGCCTCGTTTGCATCAG GATTTAGATCTGACAAGAAATCTTCTGAAAGGCAGATGGAGAAAAATGCA ACTACACAAACTTCTAAGAGGAATGTGTCGGAAGTGACAAAGAACGATAA GAAAGAAACCCGTAAAGTTAACCACAACGAAGTATCATCTAAAAATGTCG GGAATAAGTCACCAAATCAGCTTAAATCATCAAACTCTGGTGACAAAAAA TCCGAGAAAAGAAAGATGACTCCTAAGCGAGCACAAAGTGAGTTAGTTGT GAAGAGCAGTTTAGTTGTAGTTGGTATTTATTGCCAAGGGAGTTTCCCGG CAATGAAGAAAGTGGAGAACGGTGAAGTTATCTCCAAcaacaaaaatata ataaagGACAACCCAAAGGTCAATGTTGACAAATTAAATGCTACTCAAAA AACGTCAACAAAGTCTTTAATTGAGGAACATCGCAAAGAAACGGTTGTGG CTGAATTGAGCAGATACGTATATGAGGATCGCTCTTCAAGAAGCGTCGAA GTCGATAGCTTGCAATCAAGTCAGGAGATGGCAATTCCAATCATTACTGT TGAGGATTTTGATCTCCAATCTTACAACGAGACTTCCATTCCACCTTTAG AAGTATCCAATTCCATTGAAGTTCGCTCGTCAAGTCGCATCCAAGTAACC GATAAAGTGCAAGAAAGCCAGGAGATGGTGATTCCAATCATTACTATTGA GGATTTTGATCTTCCATCATACGACGAGACCTCAATTCCAT Run BLAST on NCBI protein sequence of TCONS_00015519-protein >TCONS_00015519-protein ID=TCONS_00015519-protein|Name=TCONS_00015519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=576bp
MEKIGIVIPSEVLAKKELRAQVEKPRTITKQRRVASNPNIKTEQHIESLE KAFSQETFKADQRKQASSECLLIEKELKKILQKMRSDNELSTAAAQKEKQ STQQNISTSSSNSMQDSPSVSVGDQPLKNRRKHSKHTFSKTLPLCPDSNK DTKEKREKKSTSCKVKNKPIKAGGNIQSRIQFFEQNKNLKQSSALDENVP ATKGNVLKETASNSLNQVNFGEFPTLPERTKVGMVNEELNKSKPSFSSMA KKPPVVKPRPATKPVTSGSKNVTKKSAKSASSEKVKVQSPESFTKGTSNA SKNLAGGTKSFTKKKSGEGLKKPTASFASGFRSDKKSSERQMEKNATTQT SKRNVSEVTKNDKKETRKVNHNEVSSKNVGNKSPNQLKSSNSGDKKSEKR KMTPKRAQSELVVKSSLVVVGIYCQGSFPAMKKVENGEVISNNKNIIKDN PKVNVDKLNATQKTSTKSLIEEHRKETVVAELSRYVYEDRSSRSVEVDSL QSSQEMAIPIITVEDFDLQSYNETSIPPLEVSNSIEVRSSSRIQVTDKVQ ESQEMVIPIITIEDFDLPSYDETSIP Run BLAST on NCBI transcript from alignment at sc0000212:353274..355637+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015519 ID=TCONS_00015519|Name=TCONS_00015519|organism=Clytia hemisphaerica|type=transcript|length=2364bp|location=Sequence derived from alignment at sc0000212:353274..355637+ (Clytia hemisphaerica) CACGCCTTTCGcaagtttaaaatatttttggaaattttgtatATCAATCC
TGATAAATCTAATATTCTTCGATTGATTCATCCATTTTCGAATCGTGGTA
TCATTAGAGAAGATGGAAAAGATTGGAATTGTCATACCTTCAGAGGTTCT
CGCAAAAAAAGAACTTCGAGCCCAAGTTGAGAAGCCGCGAACCATTACCA
AACAACGTCGGGTAGCATCCAACCCAAACATNCCCAAGTTGAGAAGCCAC
GAACCATCACCAAACAACGTCGGGTAGCATCCAACCCAAACATCAAAACG
GAGCAACATATTGAAAGCTTAGAAAAAGCCTTCAGTCAAGAAACCTTCAA
AGCTGATCAGAGAAAGCAGGTAAAATAAagtaaatttatattttcaattg
tgGAAGGCATTAGGTCATCCATGACAGTTTTCATACCTTATAAACTGAGG
GTGGacaaactaaaataatttatcctcTCGTAATCTTAGAATAACTTCTT
ACCCCCCTTtggataaatgaaaaaatatcccctgaaaaattttttcggat
TACCTCCTGGTAATGTTCGTCCCGATTTTCCCTCCCTCCTCGGGCAtcta
tttctttttgtaaaaaaatcgaGCTCTTTGATTTTGAAGTGCACTTAGTT
CAGAATAAGTCGGGAAAAAATtatcttgtttgttttttaaataacgcTTC
TAATGTACATGGTGTGCAGTAAACTAAATTGGTGTGATTAAGTTTGCTGA
CCAGAATCCTTAAGGTTTGCATTCTATTAttaattaagattttaaaaatt
aacgtatttttttctcttttacaaTTTCAGGCATCCTCCGAATGCTTACT
tattgaaaaagaattgaaaaaaattctacagAAAATGAGAAGTGACAATG
AGCTGTCAACTGCTGCggctcaaaaagaaaaacaatccaCACAACAGAAC
ATTTCTACAAGCTCATCAAACTCAATGCAAGATAGCCCTTCCGTCTCTGT
TGGTGATCAGCCTTTGAAGAACAGGCGAAAACATTCGAAGCACACCTTCT
CGAAGACCTTACCGCTCTGCCCCGACTCAAACAAAGATACGAAAGAGAAA
CGGGAAAAGAAATCGACTTCCTGTAAGGTAAAGAATAAACCAATCAAAGC
TGGAGGAAACATTCAATCCAGAATACAGTTCTTCGAACAAAATAAAAACC
TGAAGCAAAGTTCAGCTCTGGATGAGAATGTACCTGCAACTAAGGGTAAC
GTTTTGAAAGAAACTGCATCTAACTCGTTAAATCAAGTTAATTTTGGTGA
GTTTCCAACGTTGCCGGAGAGAACGAAAGTCGGAATGGTGAATGAAGAGC
TCAACAAAAGCAAGCCTAGCTTTTCATCTATGGCTAAGAAGCCACCAGTG
GTCAAACCACGCCCAGCTACCAAGCCTGTCACTTCAGGGTCGAAGAATGT
GACAAAGAAGTCAGCTAAAAGTGCATCAAGCGAAAAGGTCAAGGTTCAAT
CACCTGAATCATTCACAAAAGGGACTTCAAACGCATCTAAGAACCTCGCA
GGTGGAACAAAAAGCTTCACCAAAAAGAAGTCTGGGGAAGGATTGAAGAA
ACCAACAGCCTCGTTTGCATCAGGATTTAGATCTGACAAGAAATCTTCTG
AAAGGCAGATGGAGAAAAATGCAACTACACAAACTTCTAAGAGGAATGTG
TCGGAAGTGACAAAGAACGATAAGAAAGAAACCCGTAAAGTTAACCACAA
CGAAGTATCATCTAAAAATGTCGGGAATAAGTCACCAAATCAGCTTAAAT
CATCAAACTCTGGTGACAAAAAATCCGAGAAAAGAAAGATGACTCCTAAG
CGAGCACAAAGTGAGTTAGTTGTGAAGAGCAGTTTAGTTGTAGTTGGTAT
TTATTGCCAAGGGAGTTTCCCGGCAATGAAGAAAGTGGAGAACGGTGAAG
TTATCTCCAAcaacaaaaatataataaagGACAACCCAAAGGTCAATGTT
GACAAATTAAATGCTACTCAAAAAACGTCAACAAAGTCTTTAATTGAGGA
ACATCGCAAAGAAACGGTTGTGGCTGAATTGAGCAGATACGTATATGAGG
ATCGCTCTTCAAGAAGCGTCGAAGTCGATAGCTTGCAATCAAGTCAGGAG
ATGGCAATTCCAATCATTACTGTTGAGGATTTTGATCTCCAATCTTACAA
CGAGACTTCCATTCCACCTTTAGAAGTATCCAATTCCATTGAAGTTCGCT
CGTCAAGTCGCATCCAAGTAACCGATAAAGTGCAAGAAAGCCAGGAGATG
GTGATTCCAATCATTACTATTGAGGATTTTGATCTTCCATCATACGACGA
GACCTCAATTCCAT Coding sequence (CDS) from alignment at sc0000212:353274..355637+ >TCONS_00015519 ID=TCONS_00015519|Name=TCONS_00015519|organism=Clytia hemisphaerica|type=CDS|length=5184bp|location=Sequence derived from alignment at sc0000212:353274..355637+ (Clytia hemisphaerica) ATGGAAAAGATTGGAATTGTCATACCTTCAGAGGTTCTCGCAAAAAAAGA ACTTCGAGCCCAAGTTGAGAAGCCGCGAACCATTACCAAACAACGTCGGG TAGCATCCAACCCAAACATCAAAACGGAGCAACATATTGAAAGCTTAGAA AAAGCCTTCAGTCAAGAAACCTTCAAAGCTGATCAGAGAAAGCAGGCATC CTCCGAATGCTTACTtattgaaaaagaattgaaaaaaattctacagAAAA TGAGAAGTGACAATGAGCTGTCAACTGCTGCggctcaaaaagaaaaacaa tccaCACAACAGAACATTTCTACAAGCTCATCAAACTCAATGCAAGATAG CCCTTCCGTCTCTGTTGGTGATCAGCCTTTGAAGAACAGGCGAAAACATT CGAAGCACACCTTCTCGAAGACCTTACCGCTCTGCCCCGACTCAAACAAA GATACGAAAGAGAAACGGGAAAAGAAATCGACTTCCTGTAAGGTAAAGAA TAAACCAATCAAAGCTGGAGGAAACATTCAATCCAGAATACAGTTCTTCG AACAAAATAAAAACCTGAAGCAAAGTTCAGCTCTGGATGAGAATGTACCT GCAACTAAGGGTAACGTTTTGAAAGAAACTGCATCTAACTCGTTAAATCA AGTTAATTTTGGTGAGTTTCCAACGTTGCCGGAGAGAACGAAAGTCGGAA TGGTGAATGAAGAGCTCAACAAAAGCAAGCCTAGCTTTTCATCTATGGCT AAGAAGCCACCAGTGGTCAAACCACGCCCAGCTACCAAGCCTGTCACTTC AGGGTCGAAGAATGTGACAAAGAAGTCAGCTAAAAGTGCATCAAGCGAAA AGGTCAAGGTTCAATCACCTGAATCATTCACAAAAGGGACTTCAAACGCA TCTAAGAACCTCGCAGGTGGAACAAAAAGCTTCACCAAAAAGAAGTCTGG GGAAGGATTGAAGAAACCAACAGCCTCGTTTGCATCAGGATTTAGATCTG ACAAGAAATCTTCTGAAAGGCAGATGGAGAAAAATGCAACTACACAAACT TCTAAGAGGAATGTGTCGGAAGTGACAAAGAACGATAAGAAAGAAACCCG TAAAGTTAACCACAACGAAGTATCATCTAAAAATGTCGGGAATAAGTCAC CAAATCAGCTTAAATCATCAAACTCTGGTGACAAAAAATCCGAGAAAAGA AAGATGACTCCTAAGCGAGCACAAAGTGAGTTAGTTGTGAAGAGCAGTTT AGTTGTAGTTGGTATTTATTGCCAAGGGAGTTTCCCGGCAATGAAGAAAG TGGAGAACGGTGAAGTTATCTCCAAcaacaaaaatataataaagGACAAC CCAAAGGTCAATGTTGACAAATTAAATGCTACTCAAAAAACGTCAACAAA GTCTTTAATTGAGGAACATCGCAAAGAAACGGTTGTGGCTGAATTGAGCA GATACGTATATGAGGATCGCTCTTCAAGAAGCGTCGAAGTCGATAGCTTG CAATCAAGTCAGGAGATGGCAATTCCAATCATTACTGTTGAGGATTTTGA TCTCCAATCTTACAACGAGACTTCCATTCCACCTTTAGAAGTATCCAATT CCATTGAAGTTCGCTCGTCAAGTCGCATCCAAGTAACCGATAAAGTGCAA GAAAGCCAGGAGATGGTGATTCCAATCATTACTATTGAGGATTTTGATCT TCCATCATACGACGAGACCTCAATTCCAATGGAAAAGATTGGAATTGTCA TACCTTCAGAGGTTCTCGCAAAAAAAGAACTTCGAGCCCAAGTTGAGAAG CCGCGAACCATTACCAAACAACGTCGGGTAGCATCCAACCCAAACATCAA AACGGAGCAACATATTGAAAGCTTAGAAAAAGCCTTCAGTCAAGAAACCT TCAAAGCTGATCAGAGAAAGCAGGCATCCTCCGAATGCTTACTtattgaa aaagaattgaaaaaaattctacagAAAATGAGAAGTGACAATGAGCTGTC AACTGCTGCggctcaaaaagaaaaacaatccaCACAACAGAACATTTCTA CAAGCTCATCAAACTCAATGCAAGATAGCCCTTCCGTCTCTGTTGGTGAT CAGCCTTTGAAGAACAGGCGAAAACATTCGAAGCACACCTTCTCGAAGAC CTTACCGCTCTGCCCCGACTCAAACAAAGATACGAAAGAGAAACGGGAAA AGAAATCGACTTCCTGTAAGGTAAAGAATAAACCAATCAAAGCTGGAGGA AACATTCAATCCAGAATACAGTTCTTCGAACAAAATAAAAACCTGAAGCA AAGTTCAGCTCTGGATGAGAATGTACCTGCAACTAAGGGTAACGTTTTGA AAGAAACTGCATCTAACTCGTTAAATCAAGTTAATTTTGGTGAGTTTCCA ACGTTGCCGGAGAGAACGAAAGTCGGAATGGTGAATGAAGAGCTCAACAA AAGCAAGCCTAGCTTTTCATCTATGGCTAAGAAGCCACCAGTGGTCAAAC CACGCCCAGCTACCAAGCCTGTCACTTCAGGGTCGAAGAATGTGACAAAG AAGTCAGCTAAAAGTGCATCAAGCGAAAAGGTCAAGGTTCAATCACCTGA ATCATTCACAAAAGGGACTTCAAACGCATCTAAGAACCTCGCAGGTGGAA CAAAAAGCTTCACCAAAAAGAAGTCTGGGGAAGGATTGAAGAAACCAACA GCCTCGTTTGCATCAGGATTTAGATCTGACAAGAAATCTTCTGAAAGGCA GATGGAGAAAAATGCAACTACACAAACTTCTAAGAGGAATGTGTCGGAAG TGACAAAGAACGATAAGAAAGAAACCCGTAAAGTTAACCACAACGAAGTA TCATCTAAAAATGTCGGGAATAAGTCACCAAATCAGCTTAAATCATCAAA CTCTGGTGACAAAAAATCCGAGAAAAGAAAGATGACTCCTAAGCGAGCAC AAAGTGAGTTAGTTGTGAAGAGCAGTTTAGTTGTAGTTGGTATTTATTGC CAAGGGAGTTTCCCGGCAATGAAGAAAGTGGAGAACGGTGAAGTTATCTC CAAcaacaaaaatataataaagGACAACCCAAAGGTCAATGTTGACAAAT TAAATGCTACTCAAAAAACGTCAACAAAGTCTTTAATTGAGGAACATCGC AAAGAAACGGTTGTGGCTGAATTGAGCAGATACGTATATGAGGATCGCTC TTCAAGAAGCGTCGAAGTCGATAGCTTGCAATCAAGTCAGGAGATGGCAA TTCCAATCATTACTGTTGAGGATTTTGATCTCCAATCTTACAACGAGACT TCCATTCCACCTTTAGAAGTATCCAATTCCATTGAAGTTCGCTCGTCAAG TCGCATCCAAGTAACCGATAAAGTGCAAGAAAGCCAGGAGATGGTGATTC CAATCATTACTATTGAGGATTTTGATCTTCCATCATACGACGAGACCTCA ATTCCAATGGAAAAGATTGGAATTGTCATACCTTCAGAGGTTCTCGCAAA AAAAGAACTTCGAGCCCAAGTTGAGAAGCCGCGAACCATTACCAAACAAC GTCGGGTAGCATCCAACCCAAACATCAAAACGGAGCAACATATTGAAAGC TTAGAAAAAGCCTTCAGTCAAGAAACCTTCAAAGCTGATCAGAGAAAGCA GGCATCCTCCGAATGCTTACTtattgaaaaagaattgaaaaaaattctac agAAAATGAGAAGTGACAATGAGCTGTCAACTGCTGCggctcaaaaagaa aaacaatccaCACAACAGAACATTTCTACAAGCTCATCAAACTCAATGCA AGATAGCCCTTCCGTCTCTGTTGGTGATCAGCCTTTGAAGAACAGGCGAA AACATTCGAAGCACACCTTCTCGAAGACCTTACCGCTCTGCCCCGACTCA AACAAAGATACGAAAGAGAAACGGGAAAAGAAATCGACTTCCTGTAAGGT AAAGAATAAACCAATCAAAGCTGGAGGAAACATTCAATCCAGAATACAGT TCTTCGAACAAAATAAAAACCTGAAGCAAAGTTCAGCTCTGGATGAGAAT GTACCTGCAACTAAGGGTAACGTTTTGAAAGAAACTGCATCTAACTCGTT AAATCAAGTTAATTTTGGTGAGTTTCCAACGTTGCCGGAGAGAACGAAAG TCGGAATGGTGAATGAAGAGCTCAACAAAAGCAAGCCTAGCTTTTCATCT ATGGCTAAGAAGCCACCAGTGGTCAAACCACGCCCAGCTACCAAGCCTGT CACTTCAGGGTCGAAGAATGTGACAAAGAAGTCAGCTAAAAGTGCATCAA GCGAAAAGGTCAAGGTTCAATCACCTGAATCATTCACAAAAGGGACTTCA AACGCATCTAAGAACCTCGCAGGTGGAACAAAAAGCTTCACCAAAAAGAA GTCTGGGGAAGGATTGAAGAAACCAACAGCCTCGTTTGCATCAGGATTTA GATCTGACAAGAAATCTTCTGAAAGGCAGATGGAGAAAAATGCAACTACA CAAACTTCTAAGAGGAATGTGTCGGAAGTGACAAAGAACGATAAGAAAGA AACCCGTAAAGTTAACCACAACGAAGTATCATCTAAAAATGTCGGGAATA AGTCACCAAATCAGCTTAAATCATCAAACTCTGGTGACAAAAAATCCGAG AAAAGAAAGATGACTCCTAAGCGAGCACAAAGTGAGTTAGTTGTGAAGAG CAGTTTAGTTGTAGTTGGTATTTATTGCCAAGGGAGTTTCCCGGCAATGA AGAAAGTGGAGAACGGTGAAGTTATCTCCAAcaacaaaaatataataaag GACAACCCAAAGGTCAATGTTGACAAATTAAATGCTACTCAAAAAACGTC AACAAAGTCTTTAATTGAGGAACATCGCAAAGAAACGGTTGTGGCTGAAT TGAGCAGATACGTATATGAGGATCGCTCTTCAAGAAGCGTCGAAGTCGAT AGCTTGCAATCAAGTCAGGAGATGGCAATTCCAATCATTACTGTTGAGGA TTTTGATCTCCAATCTTACAACGAGACTTCCATTCCACCTTTAGAAGTAT CCAATTCCATTGAAGTTCGCTCGTCAAGTCGCATCCAAGTAACCGATAAA GTGCAAGAAAGCCAGGAGATGGTGATTCCAATCATTACTATTGAGGATTT TGATCTTCCATCATACGACGAGACCTCAATTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00015519-exon-sc0000212-1491911889:353274..353502 | TCONS_00015519-exon-sc0000212-1491911889:353274..353502 | Clytia hemisphaerica | exon |
| TCONS_00015519-exon-sc0000212-1510915933:353274..353502 | TCONS_00015519-exon-sc0000212-1510915933:353274..353502 | Clytia hemisphaerica | exon |
| TCONS_00015519-exon-sc0000212-1575043694:353274..353502 | TCONS_00015519-exon-sc0000212-1575043694:353274..353502 | Clytia hemisphaerica | exon |
| TCONS_00015519-exon-sc0000212-1491911889:353565..353642 | TCONS_00015519-exon-sc0000212-1491911889:353565..353642 | Clytia hemisphaerica | exon |
| TCONS_00015519-exon-sc0000212-1510915933:353565..353642 | TCONS_00015519-exon-sc0000212-1510915933:353565..353642 | Clytia hemisphaerica | exon |
| TCONS_00015519-exon-sc0000212-1575043694:353565..353642 | TCONS_00015519-exon-sc0000212-1575043694:353565..353642 | Clytia hemisphaerica | exon |
| TCONS_00015519-exon-sc0000212-1491911889:354104..355637 | TCONS_00015519-exon-sc0000212-1491911889:354104..355637 | Clytia hemisphaerica | exon |
| TCONS_00015519-exon-sc0000212-1510915933:354104..355637 | TCONS_00015519-exon-sc0000212-1510915933:354104..355637 | Clytia hemisphaerica | exon |
| TCONS_00015519-exon-sc0000212-1575043694:354104..355637 | TCONS_00015519-exon-sc0000212-1575043694:354104..355637 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000212 | supercontig | sc0000212:353274..355637 + |
Blast
The following BLAST results are available for this feature:
|