TCONS_00015515 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015515
Unique NameTCONS_00015515
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015515 ID=TCONS_00015515|Name=TCONS_00015515|organism=Clytia hemisphaerica|type=transcript|length=1440bp
CAGGAATCGTTTCAAGAAAGAGCGAGTCGAATGTGATGGTGAAAAATGTT
CTCGATGTCTGTCTTGGTGGAATGACCTTCTGGTTGTTTGGTTTCGGTTT
CATTTTCGGACCTGATTCTAGTGAAAATGTGAATAAATTCAGTGGAACAG
GACATTGGGCAGTTACTGTAGATGTGGAAAATGAAGCAGCTACTTATACG
CAAATGTTTTTTCATCTGTCGTTCTCCACGGCTGCTACCACTATCGTCTC
AGGTGCTGTAGCAGAACGGGTCCATTTACCTGCATATATGATTTTCGCCG
CCATCAACACAGGGCTTATCTATGTTTTTCCTGCGCATTGGGCGTGGGGT
GGTGGTTGGTTGAGTCAAGaagctttctttgattttgctGGCTCATCAGT
GGTTCATATGGCGGGGGGTATCGCCGCCCTTGTTGCCGCCATTATTATGG
GTCCACGCCACAACCGCTTCACTCCAAAGGAAGGGGAGGAAGATCTGTAC
GATATGTCAAGTCCAACAAATATCATCCTTGGAACATTCTTTTTGTGGTG
GGGATGGATTGGATTCAACTGTGGCTCCACCTTCGCTGTCACTGGAGGTG
GTTGGAAAATTGCCAGTAAAACAGCAGTTGTTACGATGAATGGAGCTATG
GCTGGAGGATTATCAGCTGTGTTCCTTTCTGCTATACTTTACTTATCACA
CAGACGAAAGTATATTTTAGACATCACGTTTTTAGCATCTGGTATTTTGG
GCGGATTGGTTGGCGTGACTGCTTGCGCCCCTATTATTCGACCCTGGGAA
GGTCTTTTTCTTGGATTCGTTGGAGGAATGATTGCTAATGGAGTCAACGA
ACTGTTAATCAAATTGAAGATTGACGATCCAGTTGGAGCTTTTGGAGTTC
ATTATGCTGCTGGATTATGGTCGATGATCGCTACTGGTTTCTTTGCAGAG
AAAATCCCTGGTATTGGTTTAGCTCCGGAAGATGGCGTCTTTAAGGGCGG
TAATGGTGGCCTATTGGCGTGGAATCTTGCTGGATGTTTGGCAATCACTT
TGTGGAGTGGTGGTTTAGCTACTATCGTGTTCTTGACACTGAAATACACA
ATTGGAATCCGTATGTCTTTGGATCATGAATTGAAAGGCTCTGACGCGGT
TGAGCATAACATCCATGAGGTACCCAAACCTCAAGAACGAAACCACGCCC
TGGGAAAGACGGTTGAATATCCTGAGAGAGAAAGCCCTGTTCATGTTCAA
ATGGTCAAAGCAAATAATTTTGCTGCGTAAGAAAACTTTTCAGATTTTAT
ATTTAAAGTATTTTGAACTTTCTTTGAGGGAGATCAATATTaaaatttgt
atatatttttttgtctaGAATTTTGTAATGTAATAGTTAAATTTGAGAAC
ATATCTTTTTAAGCATAAAACTTATTACTTTCTACAGGCC
Run BLAST on NCBI

transcript from alignment at sc0000212:272029..274470+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015515 ID=TCONS_00015515|Name=TCONS_00015515|organism=Clytia hemisphaerica|type=transcript|length=2442bp|location=Sequence derived from alignment at sc0000212:272029..274470+ (Clytia hemisphaerica)
CAGGAATCGTTTCAAGAAAGAGCGAGTCGAATGTGATGGTGAAAAATGTT
CTCGATGTCTGTCTTGGTGGAATGACCTTCTGGTTGTTTGGTTTCGGTTT
CATTTTCGGACCTGATTCTAGTGAAAATGTGAATAAATTCAGTGGAACAG
GACATTGGGCAGTTACTGTAGATGTGGAAAATGAAGCAGCTACTTATACG
CAAATGTTTTTTCATCTGTCGTTCTCCACGGCTGCTACCACTATCGTCTC
AGGTTGGTTCTGAATTACATTATTTTGAAAAGGTTTCAGTTACCGTTAAT
GTAATattaattgatttttaatattgaaatttcgaCGCACAATTTGTAAA
TCCTTGCTTTTTTGTCTCAGGTGCTGTAGCAGAACGGGTCCATTTACCTG
CATATATGATTTTCGCCGCCATCAACACAGGGCTTATCTATGTTTTTCCT
GCGCATTGGGCGTGGGGTGGTGGTTGGTTGAGTCAAGaagctttctttga
ttttgctGGCTCATCAGTGGTTCATATGGCGGGGGGTATCGCCGCCCTTG
TTGCCGCCATTATTATGGGTCCACGCCACAACCGCTTCACTCCAAAGGAA
GGGGAGGAAGATCTGTACGATATGTCAAGTCCAACAAATATCATCCTTGG
AACATTCTTTTTGTGGTGGGGATGGATTGGATTCAACTGTGGCTCCACCT
TCGCTGTCACTGGAGGTGGTTGGAAAATTGCCAGTAAAACAGCAGTTGTT
ACGATGAATGGAGCTATGGCTGGAGGATTATCAGCTGTGTTCCTTTCTGC
TATACTTTACTTATCACACAGACGAAAGTATATTTTAGACATCACGTTTT
TAGCATCTGGTATTTTGGGCGGATTGGTTGGCGTGACTGCTTGCGCCCCT
ATTATTCGACCCTGGGAAGGTCTTTTTCTTGGATTCGTTGGAGGAATGAT
TGCTAATGGAGGTAAGATAGTATTGAATTTGAATCATAAATAACCTCATA
GCTcatacaatcagtgccataatatattggcacttttggctaatttacca
tttttcgaaaattgaagatcgagcgagaatgtcaacttcaggccttcaac
ttaatttcatcgattatttcgatctgggagggatttattggctatatttc
aagccctaatggaccatttttgaacttttggatcctcaaatCCTAAGTTC
GTAAGTCTTaaatctagcgttaaaactcagagttataactctacccttcg
aatctattttagagcacttgcaaatcgattgtggtttcaaaacaccccag
taaatttcccttttgtgccaagtattttgtgacTGATTGTAGTTCGAAGT
TTAAGGCTATACACTTAACAGTGCTTGCGTTaaaatttgtattaaaaaga
AGAGGTTAAAAGAGTCGTCAAATGTATGCCCTTGCATTTATTCAGTGACA
AGTCAACTTGGTAACCTCGTACACAGTCACTTCAAAGTGTCTTTTTATCT
CGGTTTTTGCCTTGCGGTGgccttttaaatgaaaaatgttgTATTTAAAT
CTCcgaatcttttttttctctagTCAACGAACTGTTAATCAAATTGAAGA
TTGACGATCCAGTTGGAGCTTTTGGAGTTCATTATGCTGCTGGATTATGG
TCGATGATCGCTACTGGTTTCTTTGCAGAGAAAATCCCTGGTATTGGTTT
AGCTCCGGAAGATGGCGTCTTTAAGGGCGGTAATGGTGGCCTATTGGCGT
GGAATCTTGCTGGATGTTTGGCAATCACTTTGTGGAGTGGTGGTTTAGCT
ACTATCGTGgtaagttattttaactacttgtacttattgttaaattgtta
aattgttaatACTAGTCTCGTCACAAAACCTTTAGCCGTTCTCCCAGATC
TCTCCATAAAAATCAAAAGGGAACTATTGAAAACTCTTGAAATTAATTTA
AGATCTTATATTGACAAGCCCAATATTTGAATAAACCATTAATTGAAAGA
TTTAACTTTAATTTATCCATCTAATTCAATACCTATCCAATATTTCTATC
AATACAAAACTATCCTCTCTTTTCTTTTCAGTTCTTGACACTGAAATACA
CAATTGGAATCCGTATGTCTTTGGATCATGAATTGAAAGGCTCTGACGCG
GTTGAGCATAACATCCATGAGGTACCCAAACCTCAAGAACGAAACCACGC
CCTGGGAAAGACGGTTGAATATCCTGAGAGAGAAAGCCCTGTTCATGTTC
AAATGGTCAAAGCAAATAATTTTGCTGCGTAAGAAAACTTTTCAGATTTT
ATATTTAAAGTATTTTGAACTTTCTTTGAGGGAGATCAATATTaaaattt
gtatatatttttttgtctaGAATTTTGTAATGTAATAGTTAAATTTGAGA
ACATATCTTTTTAAGCATAAAACTTATTACTTTCTACAGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008658XLOC_008658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015515-exon-sc0000212-1491911889:272029..272280TCONS_00015515-exon-sc0000212-1491911889:272029..272280Clytia hemisphaericaexon
TCONS_00015515-exon-sc0000212-1510915933:272029..272280TCONS_00015515-exon-sc0000212-1510915933:272029..272280Clytia hemisphaericaexon
TCONS_00015515-exon-sc0000212-1575043694:272029..272280TCONS_00015515-exon-sc0000212-1575043694:272029..272280Clytia hemisphaericaexon
TCONS_00015515-exon-sc0000212-1491911889:272399..272989TCONS_00015515-exon-sc0000212-1491911889:272399..272989Clytia hemisphaericaexon
TCONS_00015515-exon-sc0000212-1510915933:272399..272989TCONS_00015515-exon-sc0000212-1510915933:272399..272989Clytia hemisphaericaexon
TCONS_00015515-exon-sc0000212-1575043694:272399..272989TCONS_00015515-exon-sc0000212-1575043694:272399..272989Clytia hemisphaericaexon
TCONS_00015515-exon-sc0000212-1491911889:273602..273837TCONS_00015515-exon-sc0000212-1491911889:273602..273837Clytia hemisphaericaexon
TCONS_00015515-exon-sc0000212-1510915933:273602..273837TCONS_00015515-exon-sc0000212-1510915933:273602..273837Clytia hemisphaericaexon
TCONS_00015515-exon-sc0000212-1575043694:273602..273837TCONS_00015515-exon-sc0000212-1575043694:273602..273837Clytia hemisphaericaexon
TCONS_00015515-exon-sc0000212-1491911889:274110..274470TCONS_00015515-exon-sc0000212-1491911889:274110..274470Clytia hemisphaericaexon
TCONS_00015515-exon-sc0000212-1510915933:274110..274470TCONS_00015515-exon-sc0000212-1510915933:274110..274470Clytia hemisphaericaexon
TCONS_00015515-exon-sc0000212-1575043694:274110..274470TCONS_00015515-exon-sc0000212-1575043694:274110..274470Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:272029..274470 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
48.4709	45.2327	6.50514	3.90117	1.99134	2.76087	2.59308	3.69994	6.30615	28.9845	4.47591	61.0212	24.3355	15.0987	16.2125	47.6596	3.125	11.6106	0	0	0	0	5.32375	7.0691	0	0.113248	0.919614	0.259099	0	0.954167
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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