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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015514 ID=TCONS_00015514|Name=TCONS_00015514|organism=Clytia hemisphaerica|type=transcript|length=999bp
caaaattccatgatggtgatattcttagcattattcttaattttttggct
attttcatcatggacattcttataaagtgtattcttataataaaaaagcg
tgtagattgAATCTTGAGGCTAATTATTtattaaacattaaacattTTTC
GTCAATACATTATAAAgacaaaatataaaatcatTGCATCTTCGTAGTTT
GAGAATATCTCAATTTCTTTGAATaacgaagaagaagaacaaTGAAGTTG
TTTAATGCTGGTTTATGATAGAATGATGNACGAAGAAGAAGAACAATGAA
GTTGTTTAATGCTGGTTTATGATACAATGATCTGGATGACAAGAATATGC
TTCGTAGCGTCATTTTTAAGAGTGAGCTCTTCGTGTCTGACTACGAATGA
AATACCACCAAACAACCACGGAATCCAACCTCAAATTTACATCGAAGGAC
CTATCAAACCAAGAAAGGGTGCCCTCATTACTACCATTGACCGACTTTCA
ACAGAATGGTCCTTGAGTTTGgatttcaaacttttgaaaGCACCCATAGA
ATATTGGACAAGTATAGCTCATTTAAGCATTAATGATAATATTGGGACTT
TTGGGGATCGAACCCCTCTTGTACATTTGAAATACAATACTGGTAATATT
ACACTGGTTGTATGTACCCATATTGATGACGATGACAACCACGTTTTCAC
TTGGGAAAAACCACTTACAATCGGCAAGATATACAATGTAGATATCAGAC
AACGCTATTTGAGTGGTGGCAAATACCGGTTTATTGTTTTAGtgaatggt
tttgaagtgcattcaaaagtgaacaaaaaagcCAGACAATTTTATGAcgt
gaaattctttttttcttcaccttgGTATGAGGCGAGTGATGTTGAAGTTT
ATAATTTAAAGCATACTAACTTcttgtgaatttttttccaacagCCTGGT
ATGTTttggaaattggaaaaaatgattTGGATTACAAATTCTTTCGTTA Run BLAST on NCBI protein sequence of TCONS_00015514-protein >TCONS_00015514-protein ID=TCONS_00015514-protein|Name=TCONS_00015514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MLVYDTMIWMTRICFVASFLRVSSSCLTTNEIPPNNHGIQPQIYIEGPIK
PRKGALITTIDRLSTEWSLSLDFKLLKAPIEYWTSIAHLSINDNIGTFGD
RTPLVHLKYNTGNITLVVCTHIDDDDNHVFTWEKPLTIGKIYNVDIRQRY
LSGGKYRFIVLVNGFEVHSKVNKKARQFYDVKFFFSSPWYEASDVEVYNL
KHTNFL Run BLAST on NCBI transcript from alignment at sc0000212:220573..222515+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015514 ID=TCONS_00015514|Name=TCONS_00015514|organism=Clytia hemisphaerica|type=transcript|length=1943bp|location=Sequence derived from alignment at sc0000212:220573..222515+ (Clytia hemisphaerica)
caaaattccatgatggtgatattcttagcattattcttaattttttggct
attttcatcatggacattcttataaagtgtattcttataataaaaaagcg
tgtagattgAATCTTGAGGCTAATTATTtattaaacattaaacattTTTC
GTCAATACATTATAAAgacaaaatataaaatcatTGCATCTTCGTAGTTT
GAGAATATCTCAATTTCTTTGAATaacgaagaagaagaacaaTGAAGTTG
TTTAATGCTGGTTTATGATAGAATGATGNACGAAGAAGAAGAACAATGAA
GTTGTTTAATGCTGGTTTATGATACAATGATCTGGATGACAAGAATATGC
TTCGTAGCGTCATTTTTAAGAGTGAGCTCTTCGTGTCTGACTACGGtagg
tttttgaaatattgaatttaTTATCAGAGGCTTTACTTCAATTGCTTAAG
ATTTTATGGATTTTGATGGTTTTTATGTAGACTTGCCGCTGATCAGGTTT
TTTGGCAGGGTCCCAAatgtactaattttcaagatttgtatctgacaggg
tcgacttttggttTGGACAATTTTCGGGACGgaaataagaaaatctttca
atccTTTGTCTACATTTCGTCATTTTTTGCTACTTTTCAGGTTGAAGAtg
ggaattttttttagatttttcgttccgacagggtcccaaatttaccaaac
ttTCATATCTGGCAGGGTCCCCGTCGGCTGTCAAGGTCAGTGTCCCCCTC
CGGGCATCATCTTCGTCTGCGAAATGGAAAAACGTTCCAAAACATGTCAA
ACAATCGCCaaaatctccaaattaggaATAATCCTCAAATAGTCTCTTCT
ACAAAATTAAGTTCTAGCGAAGttttaacaaaaatatcttgatgggtcaa
catttttctttttaatttttccaccTACGTGAAAAACgtgaaaactttgt
tttttatgaaactAATTTCATATCCATATATATCGAAATGTTTTATTCAT
CATTTTACAGAATGAAATACCACCAAACAACCACGGAATCCAACCTCAAA
TTTACATCGAAGGACGTAAGTGATTTTGAGGTTAGCAAACACACCTGTTT
TGAAACAGATTCCCTTATAATTTTCGTTGCACgttaaaaaattgtaaaaa
agttactctaagggtagggaatttttcaaaaatcgaaaaaaaaaattcaa
aaaagtctctctaaggctcggtttttggaggtcccatccgcacatacccc
tcatcagccaaccctagtacccccccccgggtatcaTTTCCTTTAATGTA
CAATAACAATTAAGTCTGCAATCAATTTAATTGCACTTTGAACCGCACTA
CCAAGAACCAGCTCCTTGACTATTTTCTTTACTCTCTTTCTTAGCTATCA
AACCAAGAAAGGGTGCCCTCATTACTACCATTGACCGACTTTCAACAGAA
TGGTCCTTGAGTTTGgatttcaaacttttgaaaGCACCCATAGAATATTG
GACAAGTATAGCTCATTTAAGCATTAATGATAATATTGGGACTTTTGGGG
ATCGAACCCCTCTTGTACATTTGAAATACAATACTGGTAATATTACACTG
GTTGTATGTACCCATATTGATGACGATGACAACCACGTTTTCACTTGGGA
AAAACCACTTACAATCGGCAAGATATACAATGTAGATATCAGACAACGCT
ATTTGAGTGGTGGCAAATACCGGTTTATTGTTTTAGtgaatggttttgaa
gtgcattcaaaagtgaacaaaaaagcCAGACAATTTTATGAcgtgaaatt
ctttttttcttcaccttgGTATGAGGCGAGTGATGTTGAAGTTTATAATT
TAAAGCATACTAACTTcttgtgaatttttttccaacagCCTGGTATGTTt
tggaaattggaaaaaatgattTGGATTACAAATTCTTTCGTTA Coding sequence (CDS) from alignment at sc0000212:220573..222515+ >TCONS_00015514 ID=TCONS_00015514|Name=TCONS_00015514|organism=Clytia hemisphaerica|type=CDS|length=1863bp|location=Sequence derived from alignment at sc0000212:220573..222515+ (Clytia hemisphaerica)
ATGCTGGTTTATGATACAATGATCTGGATGACAAGAATATGCTTCGTAGC
GTCATTTTTAAGAGTGAGCTCTTCGTGTCTGACTACGAATGAAATACCAC
CAAACAACCACGGAATCCAACCTCAAATTTACATCGAAGGACCTATCAAA
CCAAGAAAGGGTGCCCTCATTACTACCATTGACCGACTTTCAACAGAATG
GTCCTTGAGTTTGgatttcaaacttttgaaaGCACCCATAGAATATTGGA
CAAGTATAGCTCATTTAAGCATTAATGATAATATTGGGACTTTTGGGGAT
CGAACCCCTCTTGTACATTTGAAATACAATACTGGTAATATTACACTGGT
TGTATGTACCCATATTGATGACGATGACAACCACGTTTTCACTTGGGAAA
AACCACTTACAATCGGCAAGATATACAATGTAGATATCAGACAACGCTAT
TTGAGTGGTGGCAAATACCGGTTTATTGTTTTAGtgaatggttttgaagt
gcattcaaaagtgaacaaaaaagcCAGACAATTTTATGAcgtgaaattct
ttttttcttcaccttgGTATGAGGCGAGTGATGTTGAAGTTTATAATTTA
AAGCATACTAACTTcttgtgaATGCTGGTTTATGATACAATGATCTGGAT
GACAAGAATATGCTTCGTAGCGTCATTTTTAAGAGTGAGCTCTTCGTGTC
TGACTACGAATGAAATACCACCAAACAACCACGGAATCCAACCTCAAATT
TACATCGAAGGACCTATCAAACCAAGAAAGGGTGCCCTCATTACTACCAT
TGACCGACTTTCAACAGAATGGTCCTTGAGTTTGgatttcaaacttttga
aaGCACCCATAGAATATTGGACAAGTATAGCTCATTTAAGCATTAATGAT
AATATTGGGACTTTTGGGGATCGAACCCCTCTTGTACATTTGAAATACAA
TACTGGTAATATTACACTGGTTGTATGTACCCATATTGATGACGATGACA
ACCACGTTTTCACTTGGGAAAAACCACTTACAATCGGCAAGATATACAAT
GTAGATATCAGACAACGCTATTTGAGTGGTGGCAAATACCGGTTTATTGT
TTTAGtgaatggttttgaagtgcattcaaaagtgaacaaaaaagcCAGAC
AATTTTATGAcgtgaaattctttttttcttcaccttgGTATGAGGCGAGT
GATGTTGAAGTTTATAATTTAAAGCATACTAACTTcttgtgaATGCTGGT
TTATGATACAATGATCTGGATGACAAGAATATGCTTCGTAGCGTCATTTT
TAAGAGTGAGCTCTTCGTGTCTGACTACGAATGAAATACCACCAAACAAC
CACGGAATCCAACCTCAAATTTACATCGAAGGACCTATCAAACCAAGAAA
GGGTGCCCTCATTACTACCATTGACCGACTTTCAACAGAATGGTCCTTGA
GTTTGgatttcaaacttttgaaaGCACCCATAGAATATTGGACAAGTATA
GCTCATTTAAGCATTAATGATAATATTGGGACTTTTGGGGATCGAACCCC
TCTTGTACATTTGAAATACAATACTGGTAATATTACACTGGTTGTATGTA
CCCATATTGATGACGATGACAACCACGTTTTCACTTGGGAAAAACCACTT
ACAATCGGCAAGATATACAATGTAGATATCAGACAACGCTATTTGAGTGG
TGGCAAATACCGGTTTATTGTTTTAGtgaatggttttgaagtgcattcaa
aagtgaacaaaaaagcCAGACAATTTTATGAcgtgaaattctttttttct
tcaccttgGTATGAGGCGAGTGATGTTGAAGTTTATAATTTAAAGCATAC
TAACTTcttgtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015514-exon-sc0000212-1491911889:220573..220967 | TCONS_00015514-exon-sc0000212-1491911889:220573..220967 | Clytia hemisphaerica | exon |
| TCONS_00015514-exon-sc0000212-1510915933:220573..220967 | TCONS_00015514-exon-sc0000212-1510915933:220573..220967 | Clytia hemisphaerica | exon |
| TCONS_00015514-exon-sc0000212-1575043694:220573..220967 | TCONS_00015514-exon-sc0000212-1575043694:220573..220967 | Clytia hemisphaerica | exon |
| TCONS_00015514-exon-sc0000212-1491911889:221583..221637 | TCONS_00015514-exon-sc0000212-1491911889:221583..221637 | Clytia hemisphaerica | exon |
| TCONS_00015514-exon-sc0000212-1510915933:221583..221637 | TCONS_00015514-exon-sc0000212-1510915933:221583..221637 | Clytia hemisphaerica | exon |
| TCONS_00015514-exon-sc0000212-1575043694:221583..221637 | TCONS_00015514-exon-sc0000212-1575043694:221583..221637 | Clytia hemisphaerica | exon |
| TCONS_00015514-exon-sc0000212-1491911889:221967..222515 | TCONS_00015514-exon-sc0000212-1491911889:221967..222515 | Clytia hemisphaerica | exon |
| TCONS_00015514-exon-sc0000212-1510915933:221967..222515 | TCONS_00015514-exon-sc0000212-1510915933:221967..222515 | Clytia hemisphaerica | exon |
| TCONS_00015514-exon-sc0000212-1575043694:221967..222515 | TCONS_00015514-exon-sc0000212-1575043694:221967..222515 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:220573..222515 + |
Blast
The following BLAST results are available for this feature:
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