TCONS_00015492 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015492
Unique NameTCONS_00015492
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015492 ID=TCONS_00015492|Name=TCONS_00015492|organism=Clytia hemisphaerica|type=transcript|length=380bp
TGGAAGACTTCATTACAATTTCTCTCGTTGGTAGAGGTGAATCGAGGCTC
AAAATATGATTGTGAGAGATGTTTCCCGTCCTTTGATCCCTGGTCGCGCC
TTTGATTGAGTACTTGAAGTACCGATCGAAAATGAGAAACACGTCAGCAT
TTTCTTTTGACAGCTGATAAGTTACATACTGGTACATCTTGTAAGCCAAA
TCTCTGACGGTACCATTCGTTGGCCATCTGACGTCCCAAAACTTGGCACA
CCCATCCACGATGATAACTTCTGGTTTTGTTTGGTTCCTTTGGGAAGTCG
TTACCTTTAGAGCCTCCTTTAACTCTGACTTGGCGTTTGGAGGTCTCGTT
TCACCattcttttgaaatattgacAGGGGT
Run BLAST on NCBI

protein sequence of TCONS_00015492-protein

>TCONS_00015492-protein ID=TCONS_00015492-protein|Name=TCONS_00015492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
PLSIFQKNGETRPPNAKSELKEALKVTTSQRNQTKPEVIIVDGCAKFWDV
RWPTNGTVRDLAYKMYQYVTYQLSKENADVFLIFDRYFKYSIKGATRDQR
TGNISHNHILSLDSPLPTREIVMKSS
Run BLAST on NCBI

transcript from alignment at sc0000211:449088..449467

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015492 ID=TCONS_00015492|Name=TCONS_00015492|organism=Clytia hemisphaerica|type=transcript|length=380bp|location=Sequence derived from alignment at sc0000211:449088..449467 (Clytia hemisphaerica)
ACCCCTgtcaatatttcaaaagaatGGTGAAACGAGACCTCCAAACGCCA
AGTCAGAGTTAAAGGAGGCTCTAAAGGTAACGACTTCCCAAAGGAACCAA
ACAAAACCAGAAGTTATCATCGTGGATGGGTGTGCCAAGTTTTGGGACGT
CAGATGGCCAACGAATGGTACCGTCAGAGATTTGGCTTACAAGATGTACC
AGTATGTAACTTATCAGCTGTCAAAAGAAAATGCTGACGTGTTTCTCATT
TTCGATCGGTACTTCAAGTACTCAATCAAAGGCGCGACCAGGGATCAAAG
GACGGGAAACATCTCTCACAATCATATTTTGAGCCTCGATTCACCTCTAC
CAACGAGAGAAATTGTAATGAAGTCTTCCA

Coding sequence (CDS) from alignment at sc0000211:449088..449467

>TCONS_00015492 ID=TCONS_00015492|Name=TCONS_00015492|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0000211:449088..449467 (Clytia hemisphaerica)
CCCCTgtcaatatttcaaaagaatGGTGAAACGAGACCTCCAAACGCCAA
GTCAGAGTTAAAGGAGGCTCTAAAGGTAACGACTTCCCAAAGGAACCAAA
CAAAACCAGAAGTTATCATCGTGGATGGGTGTGCCAAGTTTTGGGACGTC
AGATGGCCAACGAATGGTACCGTCAGAGATTTGGCTTACAAGATGTACCA
GTATGTAACTTATCAGCTGTCAAAAGAAAATGCTGACGTGTTTCTCATTT
TCGATCGGTACTTCAAGTACTCAATCAAAGGCGCGACCAGGGATCAAAGG
ACGGGAAACATCTCTCACAATCATATTTTGAGCCTCGATTCACCTCTACC
AACGAGAGAAATTGTAATGAAGTCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008649XLOC_008649Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015492-proteinTCONS_00015492-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015492-exon-sc0000211-1491911889:449088..449467TCONS_00015492-exon-sc0000211-1491911889:449088..449467Clytia hemisphaericaexon
TCONS_00015492-exon-sc0000211-1510915933:449088..449467TCONS_00015492-exon-sc0000211-1510915933:449088..449467Clytia hemisphaericaexon
TCONS_00015492-exon-sc0000211-1575043694:449088..449467TCONS_00015492-exon-sc0000211-1575043694:449088..449467Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:449088..449467 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.407664	0.415207	0.331127	0	0.134455	0.562804	0	0	0	0.365123	2.46522	0.245878	0.00720933	0.859782	0.174683	0.467831	0	0.843866	1.29704	0.901514	0.0391198	0.734027	0.358855	0.858808	0.303817	0.0439636	0.701696	0	0.635672	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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