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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015484 ID=TCONS_00015484|Name=TCONS_00015484|organism=Clytia hemisphaerica|type=transcript|length=832bp
CCAATGCATAACTTGTTGTTCTCCGGCAAAAGACCTCAGCATAAAAATCC
ATCATCAAGCAGAAAGAATAGAATGCTGTACACATAGCTATACAAAAATT
GATGCATGTGAAACCATAATACACCATAAAAGTGAGAATGAAAAGAGACT
TAACACCGTGGTCAAGGACTTAAAAGCAAAATGTCAGGAATACCTAAAAG
ACAAAAATCAAGTAACTGATCTAATCCAGAGCCAATTTTCCGTCCTAGAA
AAGAAGCTATCCACTAAAATTGAAGAGACAGTGAATGCTAAGATTTCGAA
AGTCCAAGTGGCTAAGAAACCAAAAAGTTTTGCTGACGCTGCGAAAGTAA
ATGGTTTGTTGAACCTAAACAACATGAAGCAGTTACTCAGAAGGGAGAAA
GTCGAAGAACAAATCGAAGACCAAAGAAAGCTGTCAATAGACGCAAACAT
CATCATCCACGGGGtgcgtgaaaaagaaaatgaagaagatattGATTTCG
TAAACGAACTTTTGAACGACGTCAACGTAAAAACTCAACCAACCTTCGTC
TCTCGAGTTGGAAAACAATCAAATGGTGTGCGTCCAATCAAAGTCGCCTT
CAAAGACAGCCATATAAAGTACCGCTTCATGAAGAAGTTGACTGAACTAA
GACAGCACAAGAAGTACGTAAAATTGAACATCACCGACGATTTAACGAAA
ATTGAGAGAgagaaaatcaaagaatggAAAAGAAGAGCAGAAGAGAAGAC
TTTAATTGGAGGGTTCGGGGAAGTCCTCGTGACAAACTGtacctaaaaaa
gattttttttacaagatgGGTTTAGAGGCCCT Run BLAST on NCBI protein sequence of TCONS_00015484-protein >TCONS_00015484-protein ID=TCONS_00015484-protein|Name=TCONS_00015484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
QCITCCSPAKDLSIKIHHQAERIECCTHSYTKIDACETIIHHKSENEKRL
NTVVKDLKAKCQEYLKDKNQVTDLIQSQFSVLEKKLSTKIEETVNAKISK
VQVAKKPKSFADAAKVNGLLNLNNMKQLLRREKVEEQIEDQRKLSIDANI
IIHGVREKENEEDIDFVNELLNDVNVKTQPTFVSRVGKQSNGVRPIKVAF
KDSHIKYRFMKKLTELRQHKKYVKLNITDDLTKIEREKIKEWKRRAEEKT
LIGGFGEVLVTNCT Run BLAST on NCBI transcript from alignment at sc0000211:201632..202463 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015484 ID=TCONS_00015484|Name=TCONS_00015484|organism=Clytia hemisphaerica|type=transcript|length=832bp|location=Sequence derived from alignment at sc0000211:201632..202463 (Clytia hemisphaerica)
AGGGCCTCTAAACCcatcttgtaaaaaaaatcttttttaggtaCAGTTTG
TCACGAGGACTTCCCCGAACCCTCCAATTAAAGTCTTCTCTTCTGCTCTT
CTTTTccattctttgattttctcTCTCTCAATTTTCGTTAAATCGTCGGT
GATGTTCAATTTTACGTACTTCTTGTGCTGTCTTAGTTCAGTCAACTTCT
TCATGAAGCGGTACTTTATATGGCTGTCTTTGAAGGCGACTTTGATTGGA
CGCACACCATTTGATTGTTTTCCAACTCGAGAGACGAAGGTTGGTTGAGT
TTTTACGTTGACGTCGTTCAAAAGTTCGTTTACGAAATCaatatcttctt
cattttctttttcacgcaCCCCGTGGATGATGATGTTTGCGTCTATTGAC
AGCTTTCTTTGGTCTTCGATTTGTTCTTCGACTTTCTCCCTTCTGAGTAA
CTGCTTCATGTTGTTTAGGTTCAACAAACCATTTACTTTCGCAGCGTCAG
CAAAACTTTTTGGTTTCTTAGCCACTTGGACTTTCGAAATCTTAGCATTC
ACTGTCTCTTCAATTTTAGTGGATAGCTTCTTTTCTAGGACGGAAAATTG
GCTCTGGATTAGATCAGTTACTTGATTTTTGTCTTTTAGGTATTCCTGAC
ATTTTGCTTTTAAGTCCTTGACCACGGTGTTAAGTCTCTTTTCATTCTCA
CTTTTATGGTGTATTATGGTTTCACATGCATCAATTTTTGTATAGCTATG
TGTACAGCATTCTATTCTTTCTGCTTGATGATGGATTTTTATGCTGAGGT
CTTTTGCCGGAGAACAACAAGTTATGCATTGG Coding sequence (CDS) from alignment at sc0000211:201632..202463 >TCONS_00015484 ID=TCONS_00015484|Name=TCONS_00015484|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at sc0000211:201632..202463 (Clytia hemisphaerica)
ttaggtaCAGTTTGTCACGAGGACTTCCCCGAACCCTCCAATTAAAGTCT
TCTCTTCTGCTCTTCTTTTccattctttgattttctcTCTCTCAATTTTC
GTTAAATCGTCGGTGATGTTCAATTTTACGTACTTCTTGTGCTGTCTTAG
TTCAGTCAACTTCTTCATGAAGCGGTACTTTATATGGCTGTCTTTGAAGG
CGACTTTGATTGGACGCACACCATTTGATTGTTTTCCAACTCGAGAGACG
AAGGTTGGTTGAGTTTTTACGTTGACGTCGTTCAAAAGTTCGTTTACGAA
ATCaatatcttcttcattttctttttcacgcaCCCCGTGGATGATGATGT
TTGCGTCTATTGACAGCTTTCTTTGGTCTTCGATTTGTTCTTCGACTTTC
TCCCTTCTGAGTAACTGCTTCATGTTGTTTAGGTTCAACAAACCATTTAC
TTTCGCAGCGTCAGCAAAACTTTTTGGTTTCTTAGCCACTTGGACTTTCG
AAATCTTAGCATTCACTGTCTCTTCAATTTTAGTGGATAGCTTCTTTTCT
AGGACGGAAAATTGGCTCTGGATTAGATCAGTTACTTGATTTTTGTCTTT
TAGGTATTCCTGACATTTTGCTTTTAAGTCCTTGACCACGGTGTTAAGTC
TCTTTTCATTCTCACTTTTATGGTGTATTATGGTTTCACATGCATCAATT
TTTGTATAGCTATGTGTACAGCATTCTATTCTTTCTGCTTGATGATGGAT
TTTTATGCTGAGGTCTTTTGCCGGAGAACAACAAGTTATGCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015484-exon-sc0000211-1491911889:201632..202463 | TCONS_00015484-exon-sc0000211-1491911889:201632..202463 | Clytia hemisphaerica | exon |
| TCONS_00015484-exon-sc0000211-1510915933:201632..202463 | TCONS_00015484-exon-sc0000211-1510915933:201632..202463 | Clytia hemisphaerica | exon |
| TCONS_00015484-exon-sc0000211-1575043694:201632..202463 | TCONS_00015484-exon-sc0000211-1575043694:201632..202463 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000211 | supercontig | sc0000211:201632..202463 . |
Blast
The following BLAST results are available for this feature:
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