TCONS_00015472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015472
Unique NameTCONS_00015472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2242

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015472 ID=TCONS_00015472|Name=TCONS_00015472|organism=Clytia hemisphaerica|type=transcript|length=2242bp
AATGAATCGAACCTTGTTAGTGAATTTTTCTGATAGATATAACAGTAAAT
TAATGtctattttacttttatttttcagtaaaaaataacaacaaaaaaga
tttaaaaaagatagtcgATGGGTCGAATCCCGAAGAAGATTCTTACTTTG
GAACAGTTTATTTTGCGTCAACAAGTGATCAGCCTGTATCGTGATTTCAT
GCGCGTCACGCGTCACTTACCTGAAGCAGATCGTCAGGAAACGAGGAAAT
GGATACGCGATGACTTCAAACAAAATATGCATCTTCAGGATGAGATCGAC
ATCAAAATGCACTTGTCACGTGGTCGGTTATCGTTAAGAGAAGTCAGCAC
TGCTGTTCATCAAGCTAAATGATTTTCTGAGTGATGGAGAATTCACTATG
TTATATTATATTTAGTCTCAGACTTAGCACTAAAGCACGCCTGAAATTTC
AACAGTCTCTACTGTGTGCTTCAAGCATGTGTTAATTTCGTtgctttttt
ccaaatatacatTTTGGTCTCTACCAAAATGGAAGAATTTGTTTGACATC
GCAGTATTCCTGATGGGAGCTTGAATGAAAGAACGAGTGAATTTTCTTTA
TTATATGGATTAttttataattgttttttgTGAAGAAtgttaaatttttg
taaatatgatATTTGCTGACGATTTTATCTTCAATCCTTTATTTTGGATT
CGGGCATATATTATGCGGAAAGATTAAACAGGGCTAACGGTGGGGAACTT
TAATCAAATTATCCTCAGGAAAATGAGCAATCCAAAAGTTGGAACCtccc
tttttttgaaaacgtaTTTGAAAAGAAGTATGATTCATTCATGCaatttt
ttctacattttcgTTTGGAAATCTATCTAGAAACATATGGATATGGAATT
TATTCTCCAGTGTCTATTCTATTAACCTTTTCAGTTCGTTTTTTCTTTCA
GATGGATAGTATAGATAAGACATGTACACCTTTAAAACAACAATATGACC
AATGCTTTAACAAATGGTATTCTGAGAAGTTTTTGACTGGCCAATGGACA
CAAAAGGATGGGGCAGAACCATGCATTGAACTCTTTACTCAATACAAGGC
GTGTGTTACGAAATCATTGAAAGAGAAGAATATCGAATTGGATGAAGTGA
TGAAAAGGATTCTTGGCACGGAAGAAGAGAAAAAACCACCTGAGAGTAAT
TAAACAGGAAAATATTGGTGAATATACGGGAGATTTGGTGCCGACGTCGA
TGATTCTATAAAAAACATTAACATGACATCTTGAATCGAATGACCCTTCA
TGTTCAAAACTTGACGTTTGATGATTGAAAGTACTTTTATGTGTTGAAAT
CATTTCGACATTTATTTCGGTGGCAAATAAATGTCTGCCGTAAAAATAAG
TTTCAATAAATCTGACGTCCCGTTTAAATGAAGTAGTCGGAAGTAGAAAT
GGTTTAAATTGTATAAAGATTTTTAAGCAGATCATGCTGAATTTTTCgat
acaaaaatcaaaagttgTTTGCTCATTCGTATGGCAGTTTGTTAGTAAAT
AAATGTCTTCCGCCCTTTTAACCTTATTCAATCTTACTggaatatttttc
ttcaaaataccagtgaaattattttaaaatttattgagaaATCTTTTAAG
ATCATGACTTGAAGCCATTTTTGAAAGTTCACAAAAAATGGTGTTATCAT
CATCTTCaagcttataaaaatattttcttggtaGTTGTTGAGTGCTCTCT
CTGAGATAAATGGATTTCAATTTAGCGGATACCAATATTTAGTCTTTGCT
TGggaacttttttataagaaagaagGGCTCAAAAGTTCTGTCAGTTTTAT
TTGGCAACGTCATATACGGTATTTTTAACgtattttaggaattttataca
aaatattttttttaagttttctatGTAAACAAAATGATTATTATGTGtgc
aaatttgttttgaattagTAAAAACTCAGCGAGGAATCATGACAATTACT
ATCAATGTCCAATTTGTTCACTCAACCATTTTTAGGTTGAAATTGcttct
cttttctttttggacctaccttgaaggtcctttaatttaaaaatgggggg
ggggcaaatttgggccaaaagcGCCTAAATAGGgtattttggactttgtg
cgaaattgcttcattagtttttttttgaatgaagcccgatttatgaaaaa
ataaagattttcaaaagaaacatttttaagcaaatttggtcc
Run BLAST on NCBI

protein sequence of TCONS_00015472-protein

>TCONS_00015472-protein ID=TCONS_00015472-protein|Name=TCONS_00015472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MQFFLHFRLEIYLETYGYGIYSPVSILLTFSVRFFFQMDSIDKTCTPLKQ
QYDQCFNKWYSEKFLTGQWTQKDGAEPCIELFTQYKACVTKSLKEKNIEL
DEVMKRILGTEEEKKPPESN
Run BLAST on NCBI

transcript from alignment at sc0000211:281000..284426-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015472 ID=TCONS_00015472|Name=TCONS_00015472|organism=Clytia hemisphaerica|type=transcript|length=3427bp|location=Sequence derived from alignment at sc0000211:281000..284426- (Clytia hemisphaerica)
AATGAATCGAACCTTGTTAGTGAATTTTTCTGATAGATATAACAGTAAAT
TAATGTCTATTTTACTTTTATTTTTCAGTAAAAAATAACAACAAAAAAGA
TTTAAAAAAGATAGTCGATGGGTCGAATCCCGAAGAAGATTCTTACTTTG
GAACAGGTAATTTTTGCCAGTATCGAAGTGAAGTTTCTTTCTCAGTCAGG
AGCTTTATAACTATAGAGTGTTTGTACATGATAGATTACAAGGAAGTTTG
TTTCACAATTCGTTAAAACCTATGAATCCTAAAAATGAATTATCATGTTT
TTACTCCGTTAACATTTCTAAAAAGACCTCTTTCGTTTTTTCTGTTCTGT
TGATAAATATAATTGTTTCTTCTCGTCCATTTTTGTTTCTTCTGCAGTTT
ATTTTGCGTCAACAAGTGATCAGCCTGTATCGTGATTTCATGCGCGTCAC
GCGTCACTTACCTGAAGCAGATCGTCAGGAAACGAGGAAATGGATACGCG
ATGACTTCAAACAAAATATGCATCTTCAGGATGAGGTATTCCTCCTTGAA
ATCTTTCCAAAAAACTTTATTTTTTCTGCTTAGTTTTTAACAACCAATTT
AATTTTAAAAATATAATAAAATCAGGCTAGTTGGCACCATTTAAAGTAGG
TCAATGAATAAACTGCAAAGCAAAGGGGAAGATTAACAAGTTCTTCTTAA
ATTGAGACTGCTCTAACAGTCTGTGCCACTAACTCGATCGGGAAGATTCT
TCCCCCGAAATGGGAAAATTCTTCCGAAATGGGAAGAACATTCCCGAACG
GGAAATTAACTTGACACCCAAATGGGTAAGAGTTAAAAAACGGACTTCCA
GATCGGGAAGAAGCGGGAAAATAAGGAAAACTCGATCGGGATGGAACTTC
CCGTTTGGGAAGCTTACGCAGTTTTTTTCACAATTTAACAAGATTTCCAC
GGTAAAGTTTATTTTTCTTTTTGTGAAAATCCTTAAAATTTGATGTTTTT
TCACCTCCAAAAAGTTTCAACTTTCGCCGGTCATCGTACATCTTCGCCGA
AGATTCAGTCAATTTTCAACTTCCCAAAGAGGAAGAATCTTCCCAAACGG
GCAGAAAAAAATAGAGTAAGTTCTTCCCGTTTGGGAAAGTTCTTCCCATT
TCGGAAGAATCTTCCCGGTCGAGTTAGTGGCACAGACTGTCTAACGTTCA
CACTTTCATTGTTTCAGATCGACATCAAAATGCACTTGTCACGTGGTCGG
TTATCGTTAAGAGAAGTCAGCACTGCTGTTCATCAAGCTAAATGATTTTC
TGAGTGATGGAGAATTCACTATGTTATATTATATTTAGTCTCAGACTTAG
CACTAAAGCACGCCTGAAATTTCAACAGTCTCTACTGTGTGCTTCAAGCA
TGTGTTAATTTCGTTGCTTTTTTCCAAATATACATTTTGGTCTCTACCAA
AATGGAAGAATTTGTTTGACATCGCAGTATTCCTGATGGGAGCTTGAATG
AAAGAACGAGTGAATTTTCTTTATTATATGGATTATTTTATAATTGTTTT
TTGTGAAGAATGTTAAATTTTTGTAAATATGATATTTGCTGACGATTTTA
TCTTCAATCCTTTATTTTGGATTCGGGCATATATTATGCGGAAAGATTAA
ACAGGGCTAACGGTGGGGAACTTTAATCAAATTATCCTCAGGAAAATGAG
CAATCCAAAAGTTGGAACCTCCCTTTTTTTGAAAACGTATTTGAAAAGAA
GTATGATTCATTCATGCAATTTTTTCTACATTTTCGTTTGGAAATCTATC
TAGAAACATATGGATATGGAATTTATTCTCCAGTGTCTATTCTATTAACC
TTTTCAGTTCGTTTTTTCTTTCAGATGGATAGTATAGATAAGACATGTAC
ACCTTTAAAACAACAATATGACCAATGCTTTAACAAATGGTATTCTGAGA
AGTTTTTGACTGGCCAATGGACACAAAAGGATGGGGCAGAACCATGCATT
GAACTCTTTACTCAATACAAGGCGTGTGTTACGGTAAGTGTCTAGTTATT
TGTATTTTCTTGATACTTTTATTTTTGTTAATCTCTGTCGCAGAGAGTCG
CGTTTTCGATAATGCTTCCCGGCAACGAGTAAGATCATTTAAAACGTGTT
ACTGCGCCGCTTTCGCCTTTTAAATTTTGAAAAACTCTTGTCATCGCTTT
GTTAATGAACCACTGAAAATCATGAAGTCTTTTTTTGATTTTCTCGTTGT
TACTTTTTACTGAAGTGCTGAATATCATGCTCCATTTTGCCTTAGAAATC
ATTGAAAGAGAAGAATATCGAATTGGATGAAGTGATGAAAAGGATTCTTG
GCACGGAAGAAGAGAAAAAACCACCTGAGAGTAATTAAACAGGAAAATAT
TGGTGAATATACGGGAGATTTGGTGCCGACGTCGATGATTCTATAAAAAA
CATTAACATGACATCTTGAATCGAATGACCCTTCATGTTCAAAACTTGAC
GTTTGATGATTGAAAGTACTTTTATGTGTTGAAATCATTTCGACATTTAT
TTCGGTGGCAAATAAATGTCTGCCGTAAAAATAAGTTTCAATAAATCTGA
CGTCCCGTTTAAATGAAGTAGTCGGAAGTAGAAATGGTTTAAATTGTATA
AAGATTTTTAAGCAGATCATGCTGAATTTTTCGATACAAAAATCAAAAGT
TGTTTGCTCATTCGTATGGCAGTTTGTTAGTAAATAAATGTCTTCCGCCC
TTTTAACCTTATTCAATCTTACTGGAATATTTTTCTTCAAAATACCAGTG
AAATTATTTTAAAATTTATTGAGAAATCTTTTAAGATCATGACTTGAAGC
CATTTTTGAAAGTTCACAAAAAATGGTGTTATCATCATCTTCAAGCTTAT
AAAAATATTTTCTTGGTAGTTGTTGAGTGCTCTCTCTGAGATAAATGGAT
TTCAATTTAGCGGATACCAATATTTAGTCTTTGCTTGGGAACTTTTTTAT
AAGAAAGAAGGGCTCAAAAGTTCTGTCAGTTTTATTTGGCAACGTCATAT
ACGGTATTTTTAACGTATTTTAGGAATTTTATACAAAATATTTTTTTTAA
GTTTTCTATGTAAACAAAATGATTATTATGTGTGCAAATTTGTTTTGAAT
TAGTAAAAACTCAGCGAGGAATCATGACAATTACTATCAATGTCCAATTT
GTTCACTCAACCATTTTTAGGTTGAAATTGCTTCTCTTTTCTTTTTGGAC
CTACCTTGAAGGTCCTTTAATTTAAAAATGGGGGGGGGGCAAATTTGGGC
CAAAAGCGCCTAAATAGGGTATTTTGGACTTTGTGCGAAATTGCTTCATT
AGTTTTTTTTTGAATGAAGCCCGATTTATGAAAAAATAAAGATTTTCAAA
AGAAACATTTTTAAGCAAATTTGGTCC

Coding sequence (CDS) from alignment at sc0000211:281000..284426-

>TCONS_00015472 ID=TCONS_00015472|Name=TCONS_00015472|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0000211:281000..284426- (Clytia hemisphaerica)
AAATCATTGAAAGAGAAGAATATCGAATTGGATGAAGTGATGAAAAGGAT
TCTTGGCACGGAAGAAGAGAAAAAACCACCTGAGAGTAATTAAATGCAAT
TTTTTCTACATTTTCGTTTGGAAATCTATCTAGAAACATATGGATATGGA
ATTTATTCTCCAGTGTCTATTCTATTAACCTTTTCAGTTCGTTTTTTCTT
TCAGATGGATAGTATAGATAAGACATGTACACCTTTAAAACAACAATATG
ACCAATGCTTTAACAAATGGTATTCTGAGAAGTTTTTGACTGGCCAATGG
ACACAAAAGGATGGGGCAGAACCATGCATTGAACTCTTTACTCAATACAA
GGCGTGTGTTACGAAATCATTGAAAGAGAAGAATATCGAATTGGATGAAG
TGATGAAAAGGATTCTTGGCACGGAAGAAGAGAAAAAACCACCTGAGAGT
AATTAAATGCAATTTTTTCTACATTTTCGTTTGGAAATCTATCTAGAAAC
ATATGGATATGGAATTTATTCTCCAGTGTCTATTCTATTAACCTTTTCAG
TTCGTTTTTTCTTTCAGATGGATAGTATAGATAAGACATGTACACCTTTA
AAACAACAATATGACCAATGCTTTAACAAATGGTATTCTGAGAAGTTTTT
GACTGGCCAATGGACACAAAAGGATGGGGCAGAACCATGCATTGAACTCT
TTACTCAATACAAGGCGTGTGTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008634XLOC_008634Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015472-proteinTCONS_00015472-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015472-exon-sc0000211-1575043694:284271..284426TCONS_00015472-exon-sc0000211-1575043694:284271..284426Clytia hemisphaericaexon
TCONS_00015472-exon-sc0000211-1575043694:283892..284029TCONS_00015472-exon-sc0000211-1575043694:283892..284029Clytia hemisphaericaexon
TCONS_00015472-exon-sc0000211-1575043694:282394..283209TCONS_00015472-exon-sc0000211-1575043694:282394..283209Clytia hemisphaericaexon
TCONS_00015472-exon-sc0000211-1575043694:281000..282131TCONS_00015472-exon-sc0000211-1575043694:281000..282131Clytia hemisphaericaexon
TCONS_00015472-exon-sc0000211-1510915933:284271..284426TCONS_00015472-exon-sc0000211-1510915933:284271..284426Clytia hemisphaericaexon
TCONS_00015472-exon-sc0000211-1510915933:283892..284029TCONS_00015472-exon-sc0000211-1510915933:283892..284029Clytia hemisphaericaexon
TCONS_00015472-exon-sc0000211-1510915933:282394..283209TCONS_00015472-exon-sc0000211-1510915933:282394..283209Clytia hemisphaericaexon
TCONS_00015472-exon-sc0000211-1510915933:281000..282131TCONS_00015472-exon-sc0000211-1510915933:281000..282131Clytia hemisphaericaexon
TCONS_00015472-exon-sc0000211-1491911889:284271..284426TCONS_00015472-exon-sc0000211-1491911889:284271..284426Clytia hemisphaericaexon
TCONS_00015472-exon-sc0000211-1491911889:283892..284029TCONS_00015472-exon-sc0000211-1491911889:283892..284029Clytia hemisphaericaexon
TCONS_00015472-exon-sc0000211-1491911889:282394..283209TCONS_00015472-exon-sc0000211-1491911889:282394..283209Clytia hemisphaericaexon
TCONS_00015472-exon-sc0000211-1491911889:281000..282131TCONS_00015472-exon-sc0000211-1491911889:281000..282131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:281000..284426 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.565	32.4522	27.2474	25.6328	26.334	18.0944	17.7468	17.3705	12.7938	10.8198	7.30189	7.81013	5.42003	5.72518	9.5723	8.39031	19.7029	15.7101	4.54493	5.86242	13.9367	12.4435	32.0743	25.7221	6.33287	7.59165	11.5815	7.99319	16.212	16.7148
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007918MDM35_apoptosis
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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