TCONS_00015471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015471
Unique NameTCONS_00015471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1176

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015471 ID=TCONS_00015471|Name=TCONS_00015471|organism=Clytia hemisphaerica|type=transcript|length=1176bp
cgataactattacttatagaaagatttttatagtttatattttttcgata
atGTAAACAATTAGCAAGATTCCAGTTTTAGTTTAGCTTTCTCTGGTTAG
CAAACTAAAAACTTTGTTAagcaaaaacttaattttctaTTCATCTAAAT
TTATCGTTAGATTAAATACAAAAAACTAGCTAAAATGGCATGTATGTCAG
CAAAAACTGTCCCAGCGTTCACtgtacaaactttacaaaaggGAGCTCAG
GTCGAGCAAGCTCCACAAGCAGGGGCAACAAAGACACGACCACCAAACGA
GTACACCAGGTTTAAAAAGTTTTACGATCGAGGTGACCTACCCATTGCTC
TTGAACACGATACAAAGGGCAACAAAATCGCATGGAAAgtggaaatcgaa
aaattagaCTACCATCATTACCTTCCTTTGTTTTTTGATGGATTAAAGAA
CCTGAAACATCCTTATTGTTTCTTTGCACGACAAGGTATTCATGATATGT
TGGAGCATGGTGGTGCCAAAGTGTTGCCAGTCATTCCCCAGCTCATCGTT
CACATTCGTGAAGCTTTCCTCACTCGTCACCAAGAAATTATTTGCGAAAC
CTTGAAAGTTTTACAACGTTTGATCCTAAGCTCTGAATTGAGTGGCAAAG
GTTTGGTACCTTACTATCGCCAGATAATGCCAATGATTAACcagtttaaa
atgaaaaatatcaattgTGGTGATCGAATCGATTACAGTCAACAAAAGCG
ACAAAATATTGGTGATCTGATTGATGAAACTTTGACTTTGTTTGAAGAGA
ATGGTGGGGAAGATGCTTTCATTAACATCAAGTACATGGTACCTACTTAT
GAATCCAGTGTCATGAACTAACTATGATGGTGAAATCTAATCTTTCTTCA
TGGGTGTCTGGGACAATGTAATATAACGAGAAGCTTGCTGGGTAGATCAG
TTATTATACACAATAACACTTGAGATTACCAAAGGTCAAATGTAACCTTT
CCGAATCAATTGTTGTATATGAATGTACACACAAAGTAATGATAGGTAAT
TAACCTTATTGttcttgatgtttttttaattaatgaaatttaatcTGGTG
TTCGTTTCAGATGATTTGGAAGCCCTTAACCTATAAATTGTCGTCGCTTA
ACAGTCTTCACTcgcaaaaatataaa
Run BLAST on NCBI

protein sequence of TCONS_00015471-protein

>TCONS_00015471-protein ID=TCONS_00015471-protein|Name=TCONS_00015471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MACMSAKTVPAFTVQTLQKGAQVEQAPQAGATKTRPPNEYTRFKKFYDRG
DLPIALEHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLKNLKHPYCFFARQ
GIHDMLEHGGAKVLPVIPQLIVHIREAFLTRHQEIICETLKVLQRLILSS
ELSGKGLVPYYRQIMPMINQFKMKNINCGDRIDYSQQKRQNIGDLIDETL
TLFEENGGEDAFINIKYMVPTYESSVMN
Run BLAST on NCBI

transcript from alignment at sc0000211:268276..270080-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015471 ID=TCONS_00015471|Name=TCONS_00015471|organism=Clytia hemisphaerica|type=transcript|length=1805bp|location=Sequence derived from alignment at sc0000211:268276..270080- (Clytia hemisphaerica)
CGATAACTATTACTTATAGAAAGATTTTTATAGTTTATATTTTTTCGATA
ATGTAAACAATTAGCAAGATTCCAGTTTTAGTTTAGCTTTCTCTGGTTAG
CAAACTAAAAACTTTGTTAAGCAAAAACTTAATTTTCTATTCATCTAAAT
TTATCGTTAGATTAAATACAAAAAACTAGCTAAAATGGCATGTATGTCAG
CAAAAACTGTCCCAGCGTTCACTGTACAAACTTTACAAAAGGGAGCTCAG
GTTTGTTGTTCTTATTTTTCACTTAATGGTTTTCCTTTTTCAGATTAGGC
GTAGTGGTATAGTGGTTATTGTGCTTGACTTCTGTTCAGGAGGCTCGAGT
TCGATACCCACCGTGGCACTACGATTCACTTGGCAAGTGAATGCTCCTTC
GCCCGGGTCAACCCATGCCATGTGAGAGGAATTGGGTACCATAACTCTGA
TACAAGAGTATGGGTAGATATTCCAGACATTGGTGTGCTGAGACACTTAG
GAGGTTATATGTCTGCGATGACATCTGTTCTCTCGTGTAGTTCGAGTGTT
GTGGTAATACATAATGGCTCGGCAGCTCGCATCTGCAGGGTTGCAATGTC
TCCTTACGCTGTGATTCCTACTCCATCGTGGGTAGGACCCATTCCGATGC
ATCGGAGGGCATATCTATTCATCTTTTTCGCATTTTGGATCATGAGTTTT
TTTTGCAAATCAGCTTCTTTTTCACCTATTTTCTTTCATTTCCCTAGAGT
TTTTGGGAAAAATTCGAAAAGGATTAATTTTTTCCGAAAATTACTCCACG
TGAATTTAATCCACCTATAAGATATCATGTAAATAGTATTTAATGATATT
GGAATTCATCAGTTATCACTTCATTTTAGGTCGAGCAAGCTCCACAAGCA
GGGGCAACAAAGACACGACCACCAAACGAGTACACCAGGTTTAAAAAGTT
TTACGATCGAGGTGACCTACCCATTGCTCTTGAACACGATACAAAGGGCA
ACAAAATCGCATGGAAAGTGGAAATCGAAAAATTAGACTACCATCATTAC
CTTCCTTTGTTTTTTGATGGATTAAAGAACCTGAAACATCCTTATTGTTT
CTTTGCACGACAAGGTATTCATGATATGTTGGAGCATGGTGGTGCCAAAG
TGTTGCCAGTCATTCCCCAGCTCATCGTTCACATTCGTGAAGCTTTCCTC
ACTCGTCACCAAGAAATTATTTGCGAAACCTTGAAAGTTTTACAACGTTT
GATCCTAAGCTCTGAATTGAGTGGCAAAGGTTTGGTACCTTACTATCGCC
AGATAATGCCAATGATTAACCAGTTTAAAATGAAAAATATCAATTGTGGT
GATCGAATCGATTACAGTCAACAAAAGCGACAAAATATTGGTGATCTGAT
TGATGAAACTTTGACTTTGTTTGAAGAGAATGGTGGGGAAGATGCTTTCA
TTAACATCAAGTACATGGTACCTACTTATGAATCCAGTGTCATGAACTAA
CTATGATGGTGAAATCTAATCTTTCTTCATGGGTGTCTGGGACAATGTAA
TATAACGAGAAGCTTGCTGGGTAGATCAGTTATTATACACAATAACACTT
GAGATTACCAAAGGTCAAATGTAACCTTTCCGAATCAATTGTTGTATATG
AATGTACACACAAAGTAATGATAGGTAATTAACCTTATTGTTCTTGATGT
TTTTTTAATTAATGAAATTTAATCTGGTGTTCGTTTCAGATGATTTGGAA
GCCCTTAACCTATAAATTGTCGTCGCTTAACAGTCTTCACTCGCAAAAAT
ATAAA

Coding sequence (CDS) from alignment at sc0000211:268276..270080-

>TCONS_00015471 ID=TCONS_00015471|Name=TCONS_00015471|organism=Clytia hemisphaerica|type=CDS|length=1374bp|location=Sequence derived from alignment at sc0000211:268276..270080- (Clytia hemisphaerica)
GTCGAGCAAGCTCCACAAGCAGGGGCAACAAAGACACGACCACCAAACGA
GTACACCAGGTTTAAAAAGTTTTACGATCGAGGTGACCTACCCATTGCTC
TTGAACACGATACAAAGGGCAACAAAATCGCATGGAAAGTGGAAATCGAA
AAATTAGACTACCATCATTACCTTCCTTTGTTTTTTGATGGATTAAAGAA
CCTGAAACATCCTTATTGTTTCTTTGCACGACAAGGTATTCATGATATGT
TGGAGCATGGTGGTGCCAAAGTGTTGCCAGTCATTCCCCAGCTCATCGTT
CACATTCGTGAAGCTTTCCTCACTCGTCACCAAGAAATTATTTGCGAAAC
CTTGAAAGTTTTACAACGTTTGATCCTAAGCTCTGAATTGAGTGGCAAAG
GTTTGGTACCTTACTATCGCCAGATAATGCCAATGATTAACCAGTTTAAA
ATGAAAAATATCAATTGTGGTGATCGAATCGATTACAGTCAACAAAAGCG
ACAAAATATTGGTGATCTGATTGATGAAACTTTGACTTTGTTTGAAGAGA
ATGGTGGGGAAGATGCTTTCATTAACATCAAGTACATGGTACCTACTTAT
GAATCCAGTGTCATGAACTAAATGGCATGTATGTCAGCAAAAACTGTCCC
AGCGTTCACTGTACAAACTTTACAAAAGGGAGCTCAGGTCGAGCAAGCTC
CACAAGCAGGGGCAACAAAGACACGACCACCAAACGAGTACACCAGGTTT
AAAAAGTTTTACGATCGAGGTGACCTACCCATTGCTCTTGAACACGATAC
AAAGGGCAACAAAATCGCATGGAAAGTGGAAATCGAAAAATTAGACTACC
ATCATTACCTTCCTTTGTTTTTTGATGGATTAAAGAACCTGAAACATCCT
TATTGTTTCTTTGCACGACAAGGTATTCATGATATGTTGGAGCATGGTGG
TGCCAAAGTGTTGCCAGTCATTCCCCAGCTCATCGTTCACATTCGTGAAG
CTTTCCTCACTCGTCACCAAGAAATTATTTGCGAAACCTTGAAAGTTTTA
CAACGTTTGATCCTAAGCTCTGAATTGAGTGGCAAAGGTTTGGTACCTTA
CTATCGCCAGATAATGCCAATGATTAACCAGTTTAAAATGAAAAATATCA
ATTGTGGTGATCGAATCGATTACAGTCAACAAAAGCGACAAAATATTGGT
GATCTGATTGATGAAACTTTGACTTTGTTTGAAGAGAATGGTGGGGAAGA
TGCTTTCATTAACATCAAGTACATGGTACCTACTTATGAATCCAGTGTCA
TGAACTAAATGGCATGTATGTCAGCAAAAACTGTCCCAGCGTTCACTGTA
CAAACTTTACAAAAGGGAGCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008633XLOC_008633Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015471-proteinTCONS_00015471-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015471-exon-sc0000211-1575043694:269831..270080TCONS_00015471-exon-sc0000211-1575043694:269831..270080Clytia hemisphaericaexon
TCONS_00015471-exon-sc0000211-1575043694:268276..269201TCONS_00015471-exon-sc0000211-1575043694:268276..269201Clytia hemisphaericaexon
TCONS_00015471-exon-sc0000211-1510915933:269831..270080TCONS_00015471-exon-sc0000211-1510915933:269831..270080Clytia hemisphaericaexon
TCONS_00015471-exon-sc0000211-1510915933:268276..269201TCONS_00015471-exon-sc0000211-1510915933:268276..269201Clytia hemisphaericaexon
TCONS_00015471-exon-sc0000211-1491911889:269831..270080TCONS_00015471-exon-sc0000211-1491911889:269831..270080Clytia hemisphaericaexon
TCONS_00015471-exon-sc0000211-1491911889:268276..269201TCONS_00015471-exon-sc0000211-1491911889:268276..269201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:268276..270080 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.5108	11.4129	85.4489	109.934	480.664	372.438	201.458	206.134	166.455	159.155	114.001	131.383	19.2519	16.4963	18.8955	20.5907	25.2284	28.9917	31.8245	33.9959	29.5131	30.9364	30.0774	30.4807	24.7374	29.1789	88.4903	109.848	24.555	23.8974
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR019399Parkin_co-regulated_protein
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
Blast
[Close]
BLAST of TCONS_00015471 vs. Swiss-Prot (Human)
Match: PACRG (Parkin coregulated gene protein OS=Homo sapiens GN=PACRG PE=1 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 4.256e-96
Identity = 147/257 (57.20%), Postives = 176/257 (68.48%), Query Frame = 2 
Query:  215 AFTVQTLQKGAQVEQAPQAGATKTRPPNEYTRFKKFYDRGDLPIALEHDTKGNKIAWKVEIEKLDYHHYLPLFFDGLKNLKHPYCFFARQGIHDMLEHGGAKVLPVIPQLIVHIREAFLTRHQEIICETLKVLQRLILSSELSGKGLVPYYRQIMPMINQFKMKN---------------------------------------INCGDRIDYSQQKRQNIGDLIDETLTLFEENGGEDAFINIKYMVPTYESSVMN 868
             FTV+ + K + V   P AGA K RP  + T F+KFY+RGD PIALEHD+KGNKIAWKVEIEKLDYHHYLPLFFDGL  +  PY FFARQGIHDMLEHGG K+LPV+PQLI+ I+ A   R++++IC TLKVLQ L++S+E+ GK LVPYYRQI+P++N FK  N                                       +N GD IDYSQQKR+NIGDLI ETL  FE  GGE+AFINIKY+VPTYES ++N
Sbjct:   41 GFTVKAMMKNSVVRGPPAAGAFKERP-TKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN 296
The following BLAST results are available for this feature:
BLAST of TCONS_00015471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PACRG4.256e-9657.20Parkin coregulated gene protein OS=Homo sapiens GN... [more]
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