TCONS_00015470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015470
Unique NameTCONS_00015470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015470 ID=TCONS_00015470|Name=TCONS_00015470|organism=Clytia hemisphaerica|type=transcript|length=1394bp
AAGAAATCAAGATTTTGCTGATATTACGCAATAAGAGGTTCTGAAACAAT
TCATGCAAGTGAAACTCTTTCAAAGGTATCGATTTACCATGAgattaaat
aaacaaaatggTTGGAAAGCAGGTTCAAACGTACTTCAGACTCTCAGCAT
GGGTCAAACAATGGAATCAAAGCCGTATGAAAACATGAAATAGCAACTTA
AACTCACACGGGTTTCGAGAAAAAACGGTATAAATATCAGTCGCGAGGAC
ACAAATGAGATTATTCTCAGATAAGCTACACATCAACCAAGATGAAAACA
TTTGCATGCATATCGCTTTGCCTTTTAGTATTTTTCACAAATAAAGGGAA
TGCAACAAAGACACCAGGCCAATCTCTGGATGATGCCCTCACAACTTTGA
AATCAGAAGTAGCAACGTTGCAAAACACCGACTCTGATCTCATAAAAAAG
ATCAACAAGATTGAACAGGATTTAAAGGGATTGAAATTGATTCACGGTCC
ATGTGCCCCTTGTCGCTCAATTCCTGGCGATGGAAAAAATTGTGATTGCA
CTGAGTACCGACCAAGGAAAGATTGCTTGGAGTTCTACAAGTCTGGGTTC
AAGGTGAACGGCTTTTACAAATTGGCTGGACCACGCTTCAGCAGTATCAC
TGGATATTGTGACCAGAAAACTTTGGGAGGAGGATGGACCGTTGTTCAAC
GCAGAATGGATGGTTCTGTTAACTTCAACAAGAACTGGATGGATTACCGA
AAAGGCTTTGGCAAACTGGAATCTGAATTTTGGTTCGGTAATGACAATAT
ACACGACTTGACCAAATCTTCCGTTGCACCTAACAAATCTTCCTTAATGA
TTAATATGATGATGAGAGGAAACAAACAGCCTGTGTACGCAGAATATTCG
ATCTTCCAGATTGGCGATGAGGCTAGCCAGTTCCAGTTGGAGGTGTCAAA
GTTCAGTGGGAATGTCAGTGTTCATAGATTAGAAGGACATAACAAGATGA
AGTTCACCACATTCGATGGCGATCACGATATACACTCTGGGAATTGTGCA
TCGTCTGGAAGAGGTGGTTGGTGGTATTATAACTGTTTCAGTTCAAACCT
TAATGGTCAATACAATTTTGGAAGGGGTAGTAATGTTGACCTTTACTGGG
ATTGGACGGCTAAATTGCAACCCGAATTCGTTGAGATGAAAATAAGGAGA
AATACGTTATCACATTGATTTCAACCAAATAAGCAACCAAAGTTTGTCAA
GATGACTAAAGAACATTGAACTTTGTGAACCATATATAGGGTATCGTAGG
ATAGTAGAGAATAGTATTGTTCTTTACCTTTCCGCACGCTCTTTCCGTAT
TCTGTCCCATTTCTCTTTTCGTTCTTTAGCTTCTTGTTCTTTCT
Run BLAST on NCBI

protein sequence of TCONS_00015470-protein

>TCONS_00015470-protein ID=TCONS_00015470-protein|Name=TCONS_00015470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MKTFACISLCLLVFFTNKGNATKTPGQSLDDALTTLKSEVATLQNTDSDL
IKKINKIEQDLKGLKLIHGPCAPCRSIPGDGKNCDCTEYRPRKDCLEFYK
SGFKVNGFYKLAGPRFSSITGYCDQKTLGGGWTVVQRRMDGSVNFNKNWM
DYRKGFGKLESEFWFGNDNIHDLTKSSVAPNKSSLMINMMMRGNKQPVYA
EYSIFQIGDEASQFQLEVSKFSGNVSVHRLEGHNKMKFTTFDGDHDIHSG
NCASSGRGGWWYYNCFSSNLNGQYNFGRGSNVDLYWDWTAKLQPEFVEMK
IRRNTLSH
Run BLAST on NCBI

transcript from alignment at sc0000211:238636..240262-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015470 ID=TCONS_00015470|Name=TCONS_00015470|organism=Clytia hemisphaerica|type=transcript|length=1627bp|location=Sequence derived from alignment at sc0000211:238636..240262- (Clytia hemisphaerica)
AAGAAATCAAGATTTTGCTGATATTACGCAATAAGAGGTTCTGAAACAAT
TCATGCAAGTGAAACTCTTTCAAAGGTATCGATTTACCATGAGATTAAAT
AAACAAAATGGTTGGAAAGCAGGTTCAAACGTACTTCAGACTCTCAGCAT
GGGTCAAACAATGGAATCAAAGCCGTATGAAAACATGAAATAGCAACTTA
AACTCACACGGGTTTCGAGAAAAAACGGTATAAATATCAGTCGCGAGGAC
ACAAATGAGATTATTCTCAGATAAGCTACACATCAACCAAGATGAAAACA
TTTGCATGCATATCGCTTTGCCTTTTAGTATTTTTCACAAATAAAGGGAA
TGCAACAAAGACACCAGGCCAATCTCTGGATGATGCCCTCACAACTTTGA
AATCAGAAGTAGCAACGTTGCAAAACACCGACTCTGATCTCATAAAAAAG
ATCAACAAGATTGAACAGGATTTAAAGGGATTGAAATTGATTCACGGTCC
ATGTGCCCCTTGTCGCTCAATTCCTGGCGATGGAAAAAATTGTGATTGCA
CTGAGTACCGACCAAGGAAAGATTGCTTGGAGTTCTACAAGTCTGGGTTC
AAGGTATGTAAAATTATTTGGCAAATAAAGGGACAAGCCACAAAACAGCG
GTATTATTTATATGAGAAATATTTACACAAGCCAATTTTGTCTTTTTTTT
CTATGGGCTTTTTAACAATTTTGTTTCGACTTTTGTTTGCTTTTTATCAG
GTATTTAGATTTCCGAATAAATTTGTGAAGTCTATTCGGAAAAGGTCTGA
CTTTCTTGAAAATGAAAGCTTTACTACTCCTTTCAGGTGAACGGCTTTTA
CAAATTGGCTGGACCACGCTTCAGCAGTATCACTGGATATTGTGACCAGA
AAACTTTGGGAGGAGGATGGACCGTTGTTCAACGCAGAATGGATGGTTCT
GTTAACTTCAACAAGAACTGGATGGATTACCGAAAAGGCTTTGGCAAACT
GGAATCTGAATTTTGGTTCGGTAATGACAATATACACGACTTGACCAAAT
CTTCCGTTGCACCTAACAAATCTTCCTTAATGATTAATATGATGATGAGA
GGAAACAAACAGCCTGTGTACGCAGAATATTCGATCTTCCAGATTGGCGA
TGAGGCTAGCCAGTTCCAGTTGGAGGTGTCAAAGTTCAGTGGGAATGTCA
GTGTTCATAGATTAGAAGGACATAACAAGATGAAGTTCACCACATTCGAT
GGCGATCACGATATACACTCTGGGAATTGTGCATCGTCTGGAAGAGGTGG
TTGGTGGTATTATAACTGTTTCAGTTCAAACCTTAATGGTCAATACAATT
TTGGAAGGGGTAGTAATGTTGACCTTTACTGGGATTGGACGGCTAAATTG
CAACCCGAATTCGTTGAGATGAAAATAAGGAGAAATACGTTATCACATTG
ATTTCAACCAAATAAGCAACCAAAGTTTGTCAAGATGACTAAAGAACATT
GAACTTTGTGAACCATATATAGGGTATCGTAGGATAGTAGAGAATAGTAT
TGTTCTTTACCTTTCCGCACGCTCTTTCCGTATTCTGTCCCATTTCTCTT
TTCGTTCTTTAGCTTCTTGTTCTTTCT

Coding sequence (CDS) from alignment at sc0000211:238636..240262-

>TCONS_00015470 ID=TCONS_00015470|Name=TCONS_00015470|organism=Clytia hemisphaerica|type=CDS|length=1854bp|location=Sequence derived from alignment at sc0000211:238636..240262- (Clytia hemisphaerica)
GTGAACGGCTTTTACAAATTGGCTGGACCACGCTTCAGCAGTATCACTGG
ATATTGTGACCAGAAAACTTTGGGAGGAGGATGGACCGTTGTTCAACGCA
GAATGGATGGTTCTGTTAACTTCAACAAGAACTGGATGGATTACCGAAAA
GGCTTTGGCAAACTGGAATCTGAATTTTGGTTCGGTAATGACAATATACA
CGACTTGACCAAATCTTCCGTTGCACCTAACAAATCTTCCTTAATGATTA
ATATGATGATGAGAGGAAACAAACAGCCTGTGTACGCAGAATATTCGATC
TTCCAGATTGGCGATGAGGCTAGCCAGTTCCAGTTGGAGGTGTCAAAGTT
CAGTGGGAATGTCAGTGTTCATAGATTAGAAGGACATAACAAGATGAAGT
TCACCACATTCGATGGCGATCACGATATACACTCTGGGAATTGTGCATCG
TCTGGAAGAGGTGGTTGGTGGTATTATAACTGTTTCAGTTCAAACCTTAA
TGGTCAATACAATTTTGGAAGGGGTAGTAATGTTGACCTTTACTGGGATT
GGACGGCTAAATTGCAACCCGAATTCGTTGAGATGAAAATAAGGAGAAAT
ACGTTATCACATTGAATGAAAACATTTGCATGCATATCGCTTTGCCTTTT
AGTATTTTTCACAAATAAAGGGAATGCAACAAAGACACCAGGCCAATCTC
TGGATGATGCCCTCACAACTTTGAAATCAGAAGTAGCAACGTTGCAAAAC
ACCGACTCTGATCTCATAAAAAAGATCAACAAGATTGAACAGGATTTAAA
GGGATTGAAATTGATTCACGGTCCATGTGCCCCTTGTCGCTCAATTCCTG
GCGATGGAAAAAATTGTGATTGCACTGAGTACCGACCAAGGAAAGATTGC
TTGGAGTTCTACAAGTCTGGGTTCAAGGTGAACGGCTTTTACAAATTGGC
TGGACCACGCTTCAGCAGTATCACTGGATATTGTGACCAGAAAACTTTGG
GAGGAGGATGGACCGTTGTTCAACGCAGAATGGATGGTTCTGTTAACTTC
AACAAGAACTGGATGGATTACCGAAAAGGCTTTGGCAAACTGGAATCTGA
ATTTTGGTTCGGTAATGACAATATACACGACTTGACCAAATCTTCCGTTG
CACCTAACAAATCTTCCTTAATGATTAATATGATGATGAGAGGAAACAAA
CAGCCTGTGTACGCAGAATATTCGATCTTCCAGATTGGCGATGAGGCTAG
CCAGTTCCAGTTGGAGGTGTCAAAGTTCAGTGGGAATGTCAGTGTTCATA
GATTAGAAGGACATAACAAGATGAAGTTCACCACATTCGATGGCGATCAC
GATATACACTCTGGGAATTGTGCATCGTCTGGAAGAGGTGGTTGGTGGTA
TTATAACTGTTTCAGTTCAAACCTTAATGGTCAATACAATTTTGGAAGGG
GTAGTAATGTTGACCTTTACTGGGATTGGACGGCTAAATTGCAACCCGAA
TTCGTTGAGATGAAAATAAGGAGAAATACGTTATCACATTGAATGAAAAC
ATTTGCATGCATATCGCTTTGCCTTTTAGTATTTTTCACAAATAAAGGGA
ATGCAACAAAGACACCAGGCCAATCTCTGGATGATGCCCTCACAACTTTG
AAATCAGAAGTAGCAACGTTGCAAAACACCGACTCTGATCTCATAAAAAA
GATCAACAAGATTGAACAGGATTTAAAGGGATTGAAATTGATTCACGGTC
CATGTGCCCCTTGTCGCTCAATTCCTGGCGATGGAAAAAATTGTGATTGC
ACTGAGTACCGACCAAGGAAAGATTGCTTGGAGTTCTACAAGTCTGGGTT
CAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008632XLOC_008632Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015470-proteinTCONS_00015470-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015470-exon-sc0000211-1575043694:239660..240262TCONS_00015470-exon-sc0000211-1575043694:239660..240262Clytia hemisphaericaexon
TCONS_00015470-exon-sc0000211-1575043694:238636..239426TCONS_00015470-exon-sc0000211-1575043694:238636..239426Clytia hemisphaericaexon
TCONS_00015470-exon-sc0000211-1510915933:239660..240262TCONS_00015470-exon-sc0000211-1510915933:239660..240262Clytia hemisphaericaexon
TCONS_00015470-exon-sc0000211-1510915933:238636..239426TCONS_00015470-exon-sc0000211-1510915933:238636..239426Clytia hemisphaericaexon
TCONS_00015470-exon-sc0000211-1491911889:239660..240262TCONS_00015470-exon-sc0000211-1491911889:239660..240262Clytia hemisphaericaexon
TCONS_00015470-exon-sc0000211-1491911889:238636..239426TCONS_00015470-exon-sc0000211-1491911889:238636..239426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:238636..240262 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.484915	0.118943	1.41524	1.29341	0.121123	0.223331	0.0769827	0.469094	0.479928	0.816286	2.03226	0.539572	0.299264	0.330853	24.2425	35.828	2.65781	1.31587	0.318258	0.402094	0.384807	0.303087	12.8457	14.7294	8.55036	2.63929	0.333237	0.0446713	10.2561	1.37916
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
IPR020837Fibrinogen_CS
Blast
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BLAST of TCONS_00015470 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.775e-45
Identity = 97/258 (37.60%), Postives = 137/258 (53.10%), Query Frame = 1 
Query:  463 EQDLKGLKLIHGPCAP--------CRSIPGDGKNCDCTEYRPRKDCLEFYKSGFKVNGFYKLAGPRFSSITGYCDQKTLGGGWTVVQRRMDGSVNFNKNWMDYRKGFGKLESEFWFGNDNIHDLTKSSVAPNKSSLMINMM-MRGNKQPVYAEYSIFQIGDEASQFQLEVSKFSGNVSVHRLEGHNKMKFTTFDGDHDIHSGNCASSGRGGWWYYNCFSSNLNGQYNFGRGSNVDLYWDWTA----KLQPEFVEMKIR 1197
            E+ L G     GP  P         R   GD          PR +C +    G+ ++G++ +  P    +T  CD  T GGGWTV QRRMDGSV+F ++W  Y++GFG    EFW GNDNIH LT    A   S L ++++   GN Q  +A+Y  F++ DEA +++L +  F G  + + L GHN   F+T D D+D+ S NCA   +G WWY +C +SNLNG Y  G   +     +W+A    K   +  EMK+R
Sbjct:   74 ERGLPGAPGKAGPVGPKGDRGEKGMRGEKGDAGQSQSCATGPR-NCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALT----AQGSSELRVDLVDFEGNHQ--FAKYKSFKVADEAEKYKLVLGAFVGGSAGNSLTGHNNNFFSTKDQDNDVSSSNCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSEMKVR 324
The following BLAST results are available for this feature:
BLAST of TCONS_00015470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCN12.775e-4537.60Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2[more]
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