TCONS_00015463 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00015463
Unique Name	TCONS_00015463
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1857

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000211:101998..112370-

transcript sequence

>TCONS_00015463 ID=TCONS_00015463|Name=TCONS_00015463|organism=Clytia hemisphaerica|type=transcript|length=1857bp
TTaagctaaaaaataaaagaatgatAACCAATAATAAATGTAACAGAATG
TCATCTAATTAATCAGAAACTTTGAGTGAAAATGATGAATTGTTTACCAG
ATGGAAGAGGTTTTCAATGACGAACAGAAGAATGAGACAAATTCAGAAAG
GGAACAGTTGCAACAACATCATGACGATACATTCCGAGATGAAAACGAAA
CACCTGACAAAACAGAACGAAGCCagACAAACGTAAATGTATTTCCACCA
AGGAAGAAATCATCCATCGCTTCAGTGAGCCATCAGTCGTCTTCATCCAT
GGAATTTGATGGATTATGTCCATGGAGATGCGGTCAATCAGTCACCTTTG
AAACACTCAACCACCACGTGTACCAATGCAACAAAGCTAATGCGCATGAC
CAATGCCCCTTCCAGGTGTTAGGATGCACTTATGATGGATCAATAGACGT
CAAGGAGCACATGCTAATAGAGAACGCGTCACACGCTAGTCTGTTGGTAC
CTCACGTCCTCAAAAATATGGTCTCACAAGATAAGACCGATTCTGCTATG
CAACACCAAGCCGAAGATACTGCAGACTTGAGAAGACGTCTGGAAAATGA
ATCAACTAAGAACTCTATTTTATCGAACGAAGTATGTCAGTTGAAGAGAG
AACTAGCAGAGTCGAATAAAAAACTTAATTCTTTAGAGAAAGACATGGCA
GTGGTTCGATCCACTTTTGATGTGCTGCTTCGTGAATTAAACAGTGTGAA
AAATCAAGCGGTGTCAGAGGAGCGCATCAAAAGTGTGGAAGAAACAACGG
ACAAACTAAAACTGGAGAGCGCAAATGTGACAAAAAGCGTCGTGGAGAAC
CACAGCCTGATCATGCGTCTTGATGAACGAATCAATAACGTCAACTCAAA
CCTGGGTGACGTCGATTTGAGACAGCAAATACTAGAGAACACTTCTGTCG
GTGGTCGATTCATTTGGAAAATCGATCGACTGAGATCTCGCATCAAACAC
TCAGCGTTGGGTAAAGTTGCTGCTTTACACAGTGCACCGTGTTTTACTAA
AAGGTTTGGGTACAAGTTTTGCACGCGTTTATATTTGAACGGCGACGGAG
TGGGTAAAGATACGCACGTTTCGCTCTTTATTGTCATCATGCGTTCGGAG
TACGACGCTCTATTAGAATGGCCGTTTCGTCAGAAAGTGACTTTTAATTT
GTTTAACTACGCCAACCCGAACGATTCGTTAAAAGAATCGTTCATACCTG
ATGTTAGTTCGCCCAGCTTCAAACGGCCTCATAAAGAAATGAACCTTGCA
GCTGGTTGTCCGATGTTCGTAACGAAGGAACGATTGGAAACGTTCATTTT
GGATGATAGTATTTATATAGAAACTACTGTTGGAGATGCCTGATTCGCCT
TATTCTTGTTTTATCATCCTTCTGATCGAGATATGAATCCACATCTCAGC
TTTGACAATCCGTTTTTCGAGGGTAATCAAGTTCAGGCATTTTCGTTTTA
GTTGTATAGGGCAAGTAGAAAAGCCCATATGATAGGTACCTATATTGCCA
TAAAGGTTGGCATGATTGCATCTTatgagaagaaaaatgaaacaatttaC
AGAAAGTCGTTTGTGAAAACGGTTTTTGTATTTGACCAGTTCATAGCGAA
CAGATTCGAAATAAGCATTTGTATTTTCAAAGCGTATAGTAATGTATGAT
ATTAGTTGAGAGAGTTTTTTACGTTTTGTTCTTTAATTTTCATATCACTt
tgtataaatatttttaaaaatcaaaacggctaatatttttattattatta
caattttattatatgaagaaagagataACACAACGTCATAGTTAAagata
caaaaac

Run BLAST on NCBI

transcript from alignment at sc0000211:101998..112370-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00015463 ID=TCONS_00015463|Name=TCONS_00015463|organism=Clytia hemisphaerica|type=transcript|length=10373bp|location=Sequence derived from alignment at sc0000211:101998..112370- (Clytia hemisphaerica)
TTAAGCTAAAAAATAAAAGAATGATAACCAATAATAAATGTAACAGAATG
TCATCTAATTAATCAGAAACTTTGAGGTAAGCGATTTTCTTTCATTAGAA
TATGGTATCTAACAATAGGGCTAACATCTTGTGTTGTATTCCTTTTATCA
GACTTATATGAACGAGTATGTAACGCGTATAGCAAAATTTGAATTTAATA
AGCTTCTGTCAAAAGTTCAATTTTTAGAAATAATTTGGAAACTGAATAAA
AGGTAGAAATCCTTTTCAAAATTTATTTTATTTATCTATTTAAAAAAGTC
ATGTATTGTCTAAAGGCTTCTAAGGCACGCACTTCTCTACAGTGGACTAT
TGTGCGTGGACCTACAGCTTCGGCTGCCCGGCCTCAGCGGTGTCAGCTGA
CAAAGGTTATCACAGTAACATAAATTTCAACGCTCTTAAAGTTTGAATTT
TAAATTGTTAATCTTTGACAGTGAAAATGATGAATTGTTTACCAGATGGA
AGAGGTTTTCAATGACGAACAGAAGAATGAGACAAATTCAGAAAGGGAAC
AGTTGCAACAACATCATGACGATACATTCCGAGATGAAAACGAAACACCT
GACAAAACAGAACGAAGCCAGGTATGAAATTTTTTTTTTGGACCTACCCC
GGTGGAGGTCCTATAAATTAACCTCTCTTCGTCCGTCCGTCCGTCCGTCC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGT
TCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTACCAACTTTTCTCGAGATTGGTTAATTAGTT
TTTTCTGATTTTTTGCACAAAGATGTGTAACTATAAACTCTCGAATGTGA
AGGAGCCCGATTTTCGAAAAAAAAAAATTTGGGGCAAATTTGGGCCAAAA
AACGGCTAAAAAATGGGTTGGATCATTAATTTTTTCTGATTTTTTGCATG
AAAGTAGGGTACCATCATAGGTAAAAGATGGCTCAAGCAGATTTTCGCCA
AAAAATTTTGTTGGCTCAAAAAACGCATGTTTATCTATAAGAATCACTAT
TAATAAGCATACATCAATGTTCGTAGTCAAATTACTAATTTTCTTATGAG
ATATATGTTTTTTTGCTCATGAGGGCTTACTTTTTTGTGTGTTTAGACAT
GAAATTTTGGTTCCTTGGCGTGTTTTTATAAAAAAACTGGCCAAATACGA
TATTTTTTTATAAGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGA
GATTGGCTCTTTCATTCTTTATGATTTTTTGCACNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCGTGTTCTGAATGATTGTTTAATGGTCACGTCACGTA
GATATCAATTATAAATATGTTAAATGCACAACCAGGTAGGTCCATAAAAG
TATCACTTGTTTTTTCCAAAAAGAACTATTTGCTTACAACACGACATTAT
GTTACAGGGAAGAACGACTTTTTCCACCTCCCGTACCGCGTGATTACAAA
TTTGAAAAAAAGCTTTATATGCAATCAAAAATGATGTGATCAAGCCGTTC
ATTTTTATGAGTAACATTTATGTTGTCATTGGTAATTAAATGAAGAAGCA
CTGAAATCTCTTTCTACTTCCTTGACTAGAGTTTGTTGATGTTTGTTGAA
ATAGCTCTTAGTGATTAACATTCTCACCTATAGTTACCTCAAAGATTCGA
ACAAATACAAAACGGTCTCGACAAATCCATCTTAAAAATTATGTAGTTTT
ATGTTCATACCTTCTTTTACACTCTCTGTATCCGATTTATAATTGATTTC
CCAAACAGGCCACTGAAACTTCAAAATCAATTCTAGGTTATGTCTTGAAA
GAGTGATATGCTGATAAATGAAAAATAAACTATTTACACTTCTTCCTCCA
ATTCCAAATCCTCGTCACTGCTATCTTCGGCGGTAATATCAACTCTCATT
CCGCATAATAATTNTCGTCACTGCTATCTTCGGCGGTAATATCGACTCTC
ATTCCGCATAATAATTCAAATTCCTCCGGAGATATATCTGCGATTGGCAG
TAAATACTGGTTACCTATGTTTATTTCGATTTTTCGGCTTTTAAAACTTG
GAAAAAACTTTCGCGATTTTTAGGAAAATTTCATTTTTCGCGAAATTAAC
TTTCGTGAATTTCTTGTTTAATTCTTTACCTGGCAGAAACTTTCGCGAAA
AAATGCCAAAAACGCGAAAAACGCGAAAGTTTCTGCCCGCGAAAGTTTCT
GCCCTTAAAGAGAGTAAGGCCAAAAAGCCTAGTCTACACAATAGACAGTT
GGAGTTTTACGCTCGAAACGAAGGAAGATATGACGTAGCCTACAAAAAGC
CTGGAGCTGTCTATTGTGTAGACTATACATTTTGAGATTTATTCACTTTG
CGAAAACAGAACGCTCGTCCCGCAACCCCTTTTATATTGATACTCGTTTT
GTGCTTTATATGACACAAAATCGTCAAATATGTCCTGAAAATTGGATAAT
TTTGTCTTTAAGTTTTAAACTTTTTGCATACAATTCTGAGTTGAATGTTG
TGGAGGACAATAGCACAAGCTTATCTATACAGGCAATTATGAATATTTAG
TAATTTATTCATGGCGTGGGGGCGTATTCATTCTTGAAACTATGAATGTT
TTGCGGGATCACCTTTATTCATCGTTACCTCGATTTTATGGCAATTAGGT
TTTTTGAATTGAACGCATGTTTTCGATTTGTATTTGGTTGCTAAGGATTT
CTGTTGGTTGCTATGGATAGTGCTTTCGTTTTGTTTGTAAATCTTTTTTA
CGTCAGAGTGTTTTGAATGCGTCTTATTGGTCCTTACATTCCATGTGTTA
ACATGTAGAAAACGTATTTTGGTACGTTGATGCGTCACTTAAAAATTCGA
AAACCAAAAAAATCATTTTCAATCAGAGTATTCAAGAGATAGACAGCGCG
TTATGGATGCTCAATTGAATTAAGGTACATATACAATCAATTCAGTGAGT
TTACAATTTGTTTTACGGTTTACCTTTATTGCTCGCCTCTTTTTGGAAAT
TCATTTTGAAAGGCTCGTAATGCACACAGATAAAATAAGGAGGTTTCAAT
CACCTTTTTTGATTATTTGGAATAAGCTTTTAATTTCTAGAGGTCAGGAC
GAAAATGTATTTTAAATCTTAATTGTTATTGGAATTTCTTCATGTGCGTT
GGTGTCGAGACCGATTATCTTAACCTGTTCTGTAGATATTTCTCTACCGA
TAACATATATTATCACCATTTTCGCTTGTTTCTTTTCTGTCGCTTATAAT
GAATCAAAATTTGTGCAGAATCTTTTTATCAGATCAAAAGAGAGGGGATG
CAATTCTTACGAAATTGAATGTTAAAAGATGACGATGTAGTGATTTGTTG
CTCTTAAGCAACTTGACACCTTTCTGGGTATATTTAGTTATGTGGTAACT
AGAGAAGTAAGAGAATATAAAAAAGAGAAAGTGTTAACACAACTTTTTTG
TCCCGACCAAATAAAATAACGGAAGGTTAGGTGAAATTGAAAGAATTTAT
ATGTGGAATATCTTACGATCTTTTGTTGCTTTTACGTAGCTGCGAAGAGT
TGCTGGTGCAGCTGGCCTTCATANATCTTACGATCTTTTGTTGCTTTTAC
GTAGCTGCGAAGAGTTGTTGGTGCAGCTGGCCTTCATCTGATATCGGCCG
ATGTTTATACTTCTTCGTTTCCCTATTTTCCATTTTCTATGTTTATTTAC
GTGTTGCAAAACATGGTTGAATTGTTTTCGTACGAATTTGCTTTGTTTAT
TAAGACACCTTTTTCATTGCTTGAACAGAACTTATTCTACGGCACATGAT
ATATACTTTTTTGTAAACTTTTGAGAAAGATTTTGGTCGAGACGAAGAGC
ATAAAAAGTAATGTAAAGCAGAATCTCTCATTTTCTCTCACTTATCAAAG
TGTTGTTGTTGTGTAAAACGTTTAAGTCGTGTGTTATGGTTAGTAGTTGA
TGGATCTTGGTAGAAGTGAGCGGTTCTGTGTGGGCACCTCAAAGATTGTT
ATAATTGTTAGGGTTGAAATTGTTTCTCATCCAATTGGTAGTTTGAAGTT
GTTTCAAACGAATGCTACTGTAGAGTTTATAAAACTTTTCCTCATGCTTA
AACGCTCCTGAAGCTTAGAACTAAGAAAGTATACACTTATTTTTGGTGCT
TTTAGTCTAAAAGGTTTAATACCCTTCTTTATTAGTTTGTCCCATAATTC
AAAGTTCAGCCATTCCAGGCTCAGCATTGTTCTTAAATTGTTCTTATTTT
TTACCAATTTTGAGGTTCATTGTTCTTGTTCGATGTTGTTAAAATTATTC
TTGTAAAAAAGAGAGGGTGTATATACTTTGTCTGGTTTTGAGGCCCGGGT
ACGATTTCCACTGACACCAATATTACTGTGTGTTCATTCGTTTTGGTAAA
TATAATAATTCATTTTGTTCGTTCCCTTTTTCAGACAAACGTAAATGTAT
TTCCACCAAGGAAGAAATCATCCATCGCTTCAGTGAGCCATCAGTCGTCT
TCATCCATGGAATTTGATGGATTATGTCCATGGAGATGCGGTCAATCAGT
CACCTTTGAAACACTCAACCACCACGTGTACCAATGCAACAAAGCTAATG
CGCATGACCAATGCCCCTTCCAGGTGTTAGGATGCACTTATGATGTGAGT
TCTTACAAGGATTTTAGAAATATGGCCACTTGCTATATATTCCGAAATGA
TTGTTTGAAGAATTTTCCTCACTTGCATGGAGTTTGGAAAAAAGCTCTTA
GGAGGAGATTTTTTCAAAGTTGATCCCATGGCTACTACAAGTTACTTTCC
AGCAAAGTTTCTGTTTAAAAGTAAAGTGTTAATGAGCGGAAAATGGATTC
TGGGATGAAGCTTTACTTGATTTTCCTGTTTTTCCAATGTTTTGTCAATA
CTTTTTACGTCAAATATTTAGAAAAGCGCGGCTTAAATTTCAAGTCCCCT
CTTAGAAACGAATAACTTGTGGTTGATTTATAAACAAACTTTGTAATATC
TCTCATCTCTATGGAAGTTCGACTTTCCCCTTTACAATGCAATCTCTCAA
ATGTTTTTTTTGGTAACTGTCTGAGGTCACTGCCCGGCTCTTTCCTTCAC
TATTACAGCTTTCATTTCGTACAAGATACAGAAAGCTTCTTTCTACGAAA
ATTTTCCGCTATGAAATGACTGAAGAAAAAACACACTTAAAAAGAATGGA
AACGATTGCGTGACAAAGTGCAAAAGGGTTTGTTTTTAATGAAGTGTTAT
AACTTCCATTGTTGCTTCTGTTTATTTATAGGGATCAATAGACGTCAAGG
AGCACATGCTAATAGAGAACGCGTCACACGCTAGTCTGTTGGTACCTCAC
GTCCTCAAAAATATGGTCTCACAAGATAAGACCGATTCTGCTATGCAACA
CCAAGCCGAAGATACTGCAGACTTGAGAAGACGTCTGGAAAATGAATCAA
CTAAGAACTCTATTTTATCGAACGAAGTATGTCAGTTGAAGAGAGAACTA
GCAGAGTCGAATAAAAAACTTAATTCTTTAGAGAAAGACATGGCAGTGGT
TCGATCCACTTTTGATGTGCTGCTTCGTGAATTAAACAGTGTGAAAAATC
AAGCGGTGTCAGAGGAGCGCATCAAAAGTGTGGAAGAAACAACGGACAAA
CTAAAATTGGAGAACGCAAATGTGACAAAAAGCGTCGTGGAGAACCACAG
TCTGATCATGCGTCTCGATGAACGAATCAATAACGTCAACTCAAACCTGG
GTGACGTCGATTTGAGACAACAAATACTAGAGAACACTTCTGTCGGTGGT
CGATTCATTTGGAAAATCGATCGACTGAGATCTCGCATCAAACACTCAGC
AGTGGGTAAGGTCNCCCCTCTTAGAAACGAATAACTTGTGGTTGATTTAT
AAACAAACTTTGTAATATCTCTCATCTCTATGGAAGTTCGACTTTCCCCT
TTACAATGCAATCTCTCAAATGTTTTTTTTGGTAACTGTCTGAGGTCACT
GCCCGGCTCTTTCCTTCACTATTACAGCTTTCATTTCGTACAAGATACAG
AAAGCTTCTTTCTACGAAAATTTTCCGCTATGAAATGACTGAAGAAAAAA
CACACTTAAAAAGAATGGAAACGATTGCGTGACAAAGTGCAAAAGGGTTT
GTTTTTAATGAAGTGTTATAACTTCCATTGTTGCTTCTGTTTATTTATAG
GGATCAATAGACGTCAAGGAGCACATGCTAATAGAGAACGCGTCACACGC
TAGTCTGTTGGTACCTCACGTCCTCAAAAATATGGTCTCACAAGATAAGA
CCGATTCTGCTATGCAACACCAAGCCGAAGATACTGCAGACTTGAGAAGA
CGTCTGGAAAATGAATCAACTAAGAACTCTATTTTATCGAACGAAGTATG
TCAGTTGAAGAGAGAACTAGCAGAGTCGAATAAAAAACTTAATTCTTTAG
AGAAAGACATGGCAGTGGTTCGATCCACTTTTGATGTGCTGCTTCGTGAA
TTAAACAGTGTGAAAAATCAAGCGGTGTCAGAGGAGCGCATCAAAAGTGT
GGAAGAAACAACGGACAAACTAAAACTGGAGAGCGCAAATGTGACAAAAA
GCGTCGTGGAGAACCACAGCCTGATCATGCGTCTTGATGAACGAATCAAT
AACGTCAACTCAAACCTGGGTGACGTCGATTTGAGACAGCAAATACTAGA
GAACACTTCTGTCGGTGGTCGATTCATTTGGAAAATCGATCGACTGAGAT
CTCGCATCAAACACTCAGCGTTGGGTAAAGTTGCTGCTTTACACAGTGCA
CCGTGTTTTACTAAAAGGTTTGGGTACAAGTTTTGCACGCGTTTATATNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCACATGATATATA
CTTTTTTGTAAACTTTTGAGAAAGATTTTGGTCGAGACGAAGAGCATAAA
AAGTAATGTAAAGCAGAATCTCTCATTTTCTCTCACTTATCAAAGTGTTG
TTGTTGTGTAAAACGTTTGAGTCGTGTGTTATGGATGGATCTTGTTGGAA
AATAGCGGTTCTGTGTGGGGTCCTCAAAGATTGTTATAATTGTTAGGGTT
GAAATTGTTTTTCATCAATTGGTAGTTTGAAGTTGTTTCAAACGAATGCT
ACTGTAGAGTTTATAAAACTTTTCCTCATGCTTAAACGCTCCTGAAGCTT
AGAACTAAGAAAGTATACACTTATTTTTGGTGCTTTTAGTCTAAAAGGTT
TAATACCCTTCTTTATTAGTTTGTCCCATAATTCAAAGTTCAGCCATTCC
AGGCTCAGCATTGTTCTTAAATTGTTCTTATTTTTTACCAATTTTGAGGT
TCATTGTTCTTGTTCGATGTTGTTAAAATTATTCTTGTAAAAAAGAGAGG
GTGTATATACTTTGTCTGGTTTTGAGGCCCGGGTACGATTTCCACTGACA
CCAATATTACTGTGTGTTCATTCGTTTTGGTAAATATAATAATTCATTTT
GTTCGTTCCCTTTTTCAGACAAACGTAAATGTATTTCCACCAAGGAAGAA
ATCATCCATCGCTTCAGTGAGCCATCAGTCGTCTTCATCCATGGAATTTG
ATGGATTATGTCCATGGAGATGCGGTCAATCAGTCACCTTTGAAACACTC
AACCACCACGTGTACCAATGCAACAAAGCTAATGCGCATGACCAATGCCC
CTTCCAGGTGTTAGGATGCACTTATGATGTAAGTTCTTATAAATTCTTTT
AGAAATTTGACCTCTTGCTATATATTCCGAAATGATTGTCTGAAGAATTT
TCCTCACTTGCATGGAGTTTGGAAAAAAGCTCTTAGGAAGAGATTTCTTT
AAAGTTGATCCCATGGCTACTACAAGTTACCTTCCAGCAAAGTAGAGTGT
TAATAAGCGGAAAATGGATTCTGGGATGAAGCTTTACTTGATTTTCCTGT
TTTTCCAATGTTTTGTCAATACTTTTTACGTCAAATATTTAGAAAAGCGC
GGCTTAAATTTCAAGTCCCCTCTTAGAAACGAATAACTTGTGGTTGATTT
ATAAACAAACTTTGTAATATCTCTCATCTCTATGGAAGTTCGACTTTCCC
CTTTACAATGCAATCTCTCAAATGTTTTTTTTGGTAACTGTCTGAGGTCA
CTGCCCGGCTCTTTCCTTCACTATTACAGCTTTCATTTCGTACAAGATAC
AGAAAGCTTCTTTCTACGAAAATTTTCCGCTATGAAATGACTGAAGAAAA
AACACACTTAAAAAGAATGGAAACGATTGCGTGACAAAGTGCAAAAGGGT
TTGTTTTTAATGAAGTGTTATAACTTCCATTGTTGCTTCTGTTTATTTAT
AGGGATCAATAGACGTCAAGGAGCACATGCTAATAGAGAACGCGTCACAC
GCTAGTCTGTTGGTACCTCACGTCCTCAAAAATATGGTCTCACAAGATAA
GACCGATTCTGCTATGCAACACCAAGCCGAAGATACTGCAGACTTGAGAA
GACGTCTGGAAAATGAATCAACTAAGAACTCTATTTTATCGAACGAAGTA
TGTCAGTTGAAGAGAGAACTAGCAGAGTCGAATAAAAAACTTAATTCTTT
AGAGAAAGACATGGCAGTGGTTCGATCCACTTTTGATGTGCTGCTTCGTG
AATTAAACAGTGTGAAAAATCAAGCGGTGTCAGAGGAGCGCATCAAAAGT
GTGGAAGAAACAACGGACAAACTAAAACTGGAGAGCGCAAATGTGACAAA
AAGCGTCGTGGAGAACCACAGCCTGATCATGCGTCTTGATGAACGAATCA
ATAACGTCAACTCAAACCTGGGTGACGTCGATTTGAGACAGCAAATACTA
GAGAACACTTCTGTCGGTGGTCGATTCATTTGGAAAATCGATCGACTGAG
ATCTCGCATCAAACACTCAGCGTTGGGTAAAGTTGCTGCTTTACACAGTG
CACCGTGTTTTACTAAAAGGTTTGGGTACAAGTTTTGCACGCGTTTATAT
TTGAACGGCGACGGAGTGGGTAAAGATACGCACGTTTCGCTCTTTATTGT
CATCATGCGTTCGGAGTACGACGCTCTATTAGAATGGCCGTTTCGTCAGA
AAGTGACTTTTAATTTGTTTAACTACGCCAACCCGAACGATTCGTTAAAA
GAATCGTTCATACCTGATGTTAGTTCGCCCAGCTTCAAACGGCCTCATAA
AGAAATGAACCTTGCAGCTGGTTGTCCGATGTTCGTAACGAAGGAACGAT
TGGAAACGTTCATTTTGGATGATAGTATTTATATAGAAACTACTGTTGGA
GATGCCTGATTCGCCTTATTCTTGTTTTATCATCCTTCTGATCGAGATAT
GAATCCACATCTCAGCTTTGACAATCCGTTTTTCGAGGGTAATCAAGTTC
AGGCATTTTCGTTTTAGTTGTATAGGGCAAGTAGAAAAGCCCATATGATA
GGTACCTATATTGCCATAAAGGTTGGCATGATTGCATCTTATGAGAAGAA
AAATGAAACAATTTACAGAAAGTCGTTTGTGAAAACGGTTTTTGTATTTG
ACCAGTTCATAGCGAACAGATTCGAAATAAGCATTTGTATTTTCAAAGCG
TATAGTAATGTATGATATTAGTTGAGAGAGTTTTTTACGTTTTGTTCTTT
AATTTTCATATCACTTTGTATAAATATTTTTAAAAATCAAAACGGCTAAT
ATTTTTATTATTATTACAATTTTATTATATGAAGAAAGAGATAACACAAC
GTCATAGTTAAAGATACAAAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008630	XLOC_008630	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00015463-exon-sc0000211-1575043694:112295..112370	TCONS_00015463-exon-sc0000211-1575043694:112295..112370	Clytia hemisphaerica	exon
TCONS_00015463-exon-sc0000211-1575043694:111750..111899	TCONS_00015463-exon-sc0000211-1575043694:111750..111899	Clytia hemisphaerica	exon
TCONS_00015463-exon-sc0000211-1575043694:107327..107536	TCONS_00015463-exon-sc0000211-1575043694:107327..107536	Clytia hemisphaerica	exon
TCONS_00015463-exon-sc0000211-1575043694:101998..103418	TCONS_00015463-exon-sc0000211-1575043694:101998..103418	Clytia hemisphaerica	exon
TCONS_00015463-exon-sc0000211-1510915933:112295..112370	TCONS_00015463-exon-sc0000211-1510915933:112295..112370	Clytia hemisphaerica	exon
TCONS_00015463-exon-sc0000211-1510915933:111750..111899	TCONS_00015463-exon-sc0000211-1510915933:111750..111899	Clytia hemisphaerica	exon
TCONS_00015463-exon-sc0000211-1510915933:107327..107536	TCONS_00015463-exon-sc0000211-1510915933:107327..107536	Clytia hemisphaerica	exon
TCONS_00015463-exon-sc0000211-1510915933:101998..103418	TCONS_00015463-exon-sc0000211-1510915933:101998..103418	Clytia hemisphaerica	exon
TCONS_00015463-exon-sc0000211-1491911889:112295..112370	TCONS_00015463-exon-sc0000211-1491911889:112295..112370	Clytia hemisphaerica	exon
TCONS_00015463-exon-sc0000211-1491911889:111750..111899	TCONS_00015463-exon-sc0000211-1491911889:111750..111899	Clytia hemisphaerica	exon
TCONS_00015463-exon-sc0000211-1491911889:107327..107536	TCONS_00015463-exon-sc0000211-1491911889:107327..107536	Clytia hemisphaerica	exon
TCONS_00015463-exon-sc0000211-1491911889:101998..103418	TCONS_00015463-exon-sc0000211-1491911889:101998..103418	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000211	supercontig	sc0000211:101998..112370 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.84292	1.74151	0.692908	0.518407	2.31875	2.15094	2.24163	0.667557	7.63514e-05	0.0335202	0.49138	1.63995e-07	0	6.87619e-07	0	0.502493	1.40034	2.36764e-10	0	0	1.5378	1.7286	4.32895	5.50937	3.35932	3.74982	0.326246	0.698991	4.04185	2.59241

Blast

[Close]

BLAST of TCONS_00015463 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 9.542e-60
Identity = 131/371 (35.31%), Postives = 202/371 (54.45%), Query Frame = 2

Query:  317 CPWRCG-QSVTFETLNHHVYQCNKANAHDQCPFQVLGCTYDGS-IDVKEHMLIENASHASLL----------VPHVLKNMVSQDKTDSAMQHQAEDTADLRRRLENESTKNSILSNE--VCQLKRELAESNKKLNSLEKDMAVVRSTFDVLLRELNSVKNQAVSEERIKSVEETTDKLKLESANVTKSVVENHSLIMRLDERINNVNSNLGDVDLRQQILENTSVGGRFIWKIDRLRSRIKHSALGKVAALHSAPCFTKRFGYKFCTRLYLNGDGVGKDTHVSLFIVIMRSEYDALLEWPFRQKVTFNLFNYANPNDSLKESFIPDVSSPSFKRPHKEMNLAAGCPMFVTKERLE--TFILDDSIYIETTV 1381
            CP +C  Q++    L+ H+ +C   NA   C F+  GC + G+   +K H       H +LL          V  +    V ++K+  ++ +Q          +E E  K  + +NE  +  L+R +    +KL  L+K++   R  ++    E +S+K+   S +   +  E+ DK    +  V ++     S + R D+ ++  +  L D+DLR Q+LE  S  G  IWKI   + R + + +GK  +L+S P +T  FGYK C R+YLNGDG+GK TH+SLF VIMR EYDALL WPF+QKVT  L +  +    L ++F PD +S SFK+P  EMN+A+GCP+FV +  LE  T+I DD+I+I+  V
Sbjct:  204 CPHKCSVQTLLRSELSAHLSEC--VNAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQI-----CSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWE----EADSMKSSVESLQNRVTELESVDK---SAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 560

The following BLAST results are available for this feature:

BLAST of TCONS_00015463 vs. Swiss-Prot (Human)

BLAST of TCONS_00015463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRAF3	9.542e-60	35.31	TNF receptor-associated factor 3 OS=Homo sapiens G...	[more]

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TCONS_00015463 (transcript) - C. hemisphaerica